RNA id: XM_043241348.1


Basic Information

Item Value
RNA id XM_043241348.1
length 1634
RNA type mRNA
GC content 0.47
exon number 6
gene id nipa2
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18198983 ~ 18205234 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAACCGAATAATTTTAATACCGTAGTTTTGCGGTAGGCCAGGATTGCTCCTCTGGACTGAATCTTTGGTGTGTGTATGTCAATGTGACGAGAGGAAACTCTACCAACAACACTATGGGTCTAGACAGAGGAAAGTACGATTTCTATATAGGCCTCGCTTTGGCTATAAGCTCCAGTATATTTATTGGAGGTAGTTTCATCTTAAAGAAGAAAGGACTCCTTCGACTGGCCAGGAAGGGCTCTATGCGGGCAGGCCAAGGAGGTCACGCATACTTAAAAGAATGGCTTTGGTGGGCTGGCTTGCTGTCAATGGGGGCCGGCGAAGCTGCCAATTTCGCCGCGTACGCCTTTGCTCCCGCCACCCTCGTCACTCCTCTCGGGGCTCTCAGCGTGCTAGTCAGTGCGGTACTGTCCTCGTACTTCCTGACAGAGAGGTTGAATCTGCACGGGAAGCTTGGCTGTCTGCTCAGTATCCTGGGCTCCACTACCATGGTGATACATGCCCCTCAAGAGGAGGAGATGGACAGTCTAGAAGACATGGCCAAAAAACTGGTTGATCCAGGCTTCGTGGTCTTCGCGACAGCTGTCATCATCACTGCGCTCATTTTCATCTTCGTATTGGGCCCACGCCACGGGCAAACCAACATCCTGGTCTACATCACCATCTGCTCCGTGATCGGTGCTCTGTCCGTCTCCTGCGTGAAGGGATTGGGCATCACCATTAAGGAGGCCATCGCCGGAAAGCCAGTGTTGCGAAACCCTTTGGcctggctgctgctgctgagccTGATCGCTTGCGTTAGCACACAGATCAACTACCTGAACAAAGCACTGGACATCTTCAACACATCCCTGGTGACGCCCATCTATTACGTCTTCTTCACCACCTCCGTGCTCTCCTGCTCTGCCATATTGTTCAAAGAATGGGAACACATGGGCACCGATGACATCATCGGCACACTGAGCGGCTTTGTTACGATTATCGTGGGCATCTTCCTGCTGCACGCCTTTAAGGACGTTAGCATTAGCTTGGCGACATTGGCTGTGTCCATCAGGAAGGACGAGAGGAACGGCCCTGTATTAAACGGCATGGCAGCTCACAACCACTCCAATTATGAGCTGCTACGTAACGATGTCACAGAGGACTTCGACGACAGAGAGTCAGGGTTGCCTTTCGACAGCGTCTCCAGAAGAAACGGCACTATGACCGTCTCTTAGGTTCAAAGAGGAACCGGTATGCAGCAGTTCgtctatgaaaatgttttggctGCTCTATGGACATTTAgcctttttctttccttttcagaTATGAGATAAAAACCTAAGACAATCAACTCtcaatacaaaaacataaatacgaAAAGATGGACCAATCGATTGTACTAAGGGTTTTGtttggcttatttttttttatttttttgttcatttcaaacTAGACTACATGGTAAGCTTCATCTCATTCCTCCATGTAGCACTGTAAATATACAACTGTACGTTTTTCAGAgacttttgttatattttatgtacagatttatgtatttacatgcactGAGTTTCTTTCTACAAAATCGGTAGTTGCTTTGACTTTGTAATAAAGACATCCAAGTGGAATGACGAGAAGAACTTCTCAGTTCA

Function

GO:

id name namespace
GO:0015693 magnesium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0015095 magnesium ion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68269 lncRNA downstream 81401 18117356 ~ 18117582 (-) True G46092
TU68243 lncRNA downstream 101493 18097068 ~ 18097490 (-) True G46074
XR_006251165.1 lncRNA downstream 132034 18062781 ~ 18066949 (-) True LOC122346732
XR_006251164.1 lncRNA downstream 154353 18040364 ~ 18044630 (-) False LOC122346731
TU68349 lncRNA upstream 44700 18249934 ~ 18250635 (-) True G46140
TU68375 lncRNA upstream 127609 18332843 ~ 18333266 (-) True G46160
TU68387 lncRNA upstream 154445 18359679 ~ 18359981 (-) True G46172
TU68733 lncRNA upstream 398757 18603991 ~ 18686824 (-) True G46412
XR_006251132.1 lncRNA upstream 437488 18642722 ~ 18643353 (-) True LOC122346470
XM_043241349.1 mRNA downstream 7460 18187428 ~ 18191523 (-) True LOC122346611
XM_043243032.1 mRNA downstream 43018 18154549 ~ 18155965 (-) True chst7
XM_043242642.1 mRNA downstream 82606 18110646 ~ 18116377 (-) True rp2
XM_043242524.1 mRNA downstream 89868 18099864 ~ 18109115 (-) False jade3
XM_043242525.1 mRNA downstream 90142 18099864 ~ 18108841 (-) True jade3
XM_043241252.1 mRNA upstream 417 18205651 ~ 18207634 (-) False nipa1
XM_043241251.1 mRNA upstream 417 18205651 ~ 18207634 (-) True nipa1
XM_043240994.1 mRNA upstream 158604 18363838 ~ 18455787 (-) False LOC122346396
XM_043240993.1 mRNA upstream 158604 18363838 ~ 18455787 (-) True LOC122346396
XM_043242319.1 mRNA upstream 252893 18458127 ~ 18488874 (-) False gabra5
XR_006251188.1 other downstream 424876 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other downstream 424876 17743715 ~ 17774107 (-) True opa1
TU67962 other downstream 890505 17307815 ~ 17308478 (-) True G45910
TU67944 other downstream 1011665 17186689 ~ 17187318 (-) True G45895
TU67937 other downstream 1368775 16816640 ~ 16830208 (-) True rgs8
TU68751 other upstream 439072 18644306 ~ 18645134 (-) True G46420
TU68756 other upstream 508940 18714174 ~ 18717488 (-) True G46423
TU68851 other upstream 849912 19055146 ~ 19056131 (-) True G46478
XR_006251201.1 other upstream 909827 19115061 ~ 19149730 (-) False vdrb
TU68985 other upstream 1348085 19553319 ~ 19555931 (-) False tsfm

Expression Profile