RNA id: XM_043241349.1


Basic Information

Item Value
RNA id XM_043241349.1
length 2819
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC122346611
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18187428 ~ 18191523 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaaaagagagcaagtTAGTGCTTGgagaaaaactacaaaagttATGTTGGGGCTGTCTTATTGTAAGCCAAGTTAGCcaacaacaatatttaatatactttgtaaaattgttttattcctgtaatgcagagctgaattttcattagcCATTTCTCCCATCTTCAGTTCTAATTTATTATCAATATGctgataataaaagaaaaaaaaattcaaaaacctACTgacccaaacattttaaatgtagtgtaaattgttacaaaatatttatattttaaataaatgcatttctttttgcactttttattaCAAGAACCCTaaatatcagtaaaaaaaaataaatgaataatcagTGGGATTTTttccaacactgataataaatcagcatattagattaATTTCTGAGAGAGCTTTTCaaggacactgaagactgaaggtATGGATTACAAATTCAGCTTGGCATTACAGGAGTAAATAGTATTAAGTATATTTGTATAGAAACCCcttatttattctaataataattctacttatatttcacaatattatagttttactgtattgtatcaaataaatgcaacatttatgaGCATAAAGAAAATTTTAATGATCCCACACGTTTGAATTGTATGCATgcgtatatgtatgtaaattgtACGTGTAtgcgtgtacacacacacacaacaaaaaacaaaaattaaacgatgtgcaaaaaaaagttttaaatactgTAGGAACAAAAATTGAATGAAACAagcttctttcttctctcttaATAAGAACACAGTACTTGACAGATTAAAGATTAATCATTCATGAGCATACTTGTCCGTAGGTGTTGTGGCAGTGAGTCAGGGGAGACAGGTCACCAGTATGAGGGAGTAATTGAGAGCAAAGAGGGGGAGGAAAAGTGCCATGTGTTTTTCCAGTGATTGAGAGAGCAAGGATGTGTAAGAGATCGAGAATGAATGAGAGTCCAAGCTCTCCAAGCTgtaattctgtttaaaatgcattctacGCAAAACACTGATGTGTCGTCTCCCCCTCCCCgatgcactctctctctctccctctctctgcttTATTTGCCGTCTGCTGTTCTAATCAGATAGAAGAGCTTTTCTGTGCAGTGGTGTGGAAGTGGAGCTCTTTCTGCAGGAGACCCGAGCCATGCCAAACACAGACAGCTACAGGTCACACTCTCTGAACGCTTCAGGGGGATTCTGTCTGCAAATAAGAGACGCTCTGTGCACGAAGTGACTCTTCTCATCTTTTacgATCCTTTAAAAGCACTGCATTTCATCTCAAACCAGCCTATGTCAAACTGTGCATGCATGAGGGCCTgtgtttcaacttaaaaaaaaaaacaaaaaacaaactcaacATGACTATCACCATTCAGAATATCACAGCCACCTCTGCCATCGTGAGCTGGCCGTCATCTCCAGGCTGCGTGGACACGTTCTACAGCGTCATGTATCACCCCAACTGGAACAGCCTGTTAATGGGTTATACTCGCAAGAGCTTCCTGCGGGAGGACAGGGTCCCCGTGAGCCAGACGTCCACGAGTCTGGGCAGCCTCAGTCCACAGACCACTTACATCCTCTGCGTCACCTGCCAGTCTGCCAACCCCACCAGAGAGCAGTGCCAGGTCTTCAGTACCTTAGATGAGGGCACTGAGCTGGGAGAGAGCGGCAGGGAGCTGGCGATGGGCGTCTGGCTGGCCAGCAGCATCCTTTTGCTGATCATTGCTGTGGCTCTGCTTTGGGGATGTCTGCACACCATGTGTCCAGCAAAGAGGGACCCAGAAAGAGGCAGCCAGTCAGGTCCTAACCCTCCACACCTGGCCCTGACCCCCATGGGTGGCAACATGGGAAGCGAAGGAAGAAAAAGTCTGTACACACTCAGCTGCAGCGGGGAAGACTCTCAGAACGCAACGGTGATTGAGAATCCTTTTCGAGCCGAGCACGGCAGGGAAATGGTGAACGGGCAGGGTCTTGAACTTCGAACACCAAGTAATAAACAGAGATTTGGCCCTGGGTCAGAATAACTAGGGCACcaaattgttattttgatgCGCTGACCCCAAAAATTCAATGAGGACAAACGCCGGGGTTGAAATCATTTTGAGGAAAGGAGATCGACAGTCGAACCAGGATGACAGGgttaaattagcatttaaatgtatgatgttaatatcacaaatatattaaaactgaagGAAACTGGAGGAGGTGGCTTGGCTTTAAACTTTTACAAACTGCAGTTTTTTTGTGGTATGCCTTTACAGTGGTTCAATTTTTAACGTGAGTTCATGTATTTGGAATGAGAATTAATCTAGGTTTATGCTTTTGTTCCATTTATTTACTActcatttacaataatttataaataataatcataactaAAATAAtcgtttaaaaatttaattttatttagtaagaaataaaacattcacatcaaaacaaaatattcacaTCAGCATaacttattttagatatttCCACATAATTCGGCTCACCTATCAGCTTACAATGTTGGAATTGTGTCTGTAGAGTACAGTATcagtttaaagttaaacacCACTGACATATTGGTTTTGCAAGGCATAAAACatccaaccaaaaaaaaaaataaaaatcttgtgCAAACAACTGCTTTGTGCAACGTTACCTTTAATGGCTGTAGAAGTGATTTTAATCTCTTTGTGAGTTGATAGTCTATCAGTTTTGTGTTAGTTGCACTTAAATCCTACTATGCTTGAAATGTACTTTGCTACCTATCCatcttgcttaataaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68269 lncRNA downstream 69846 18117356 ~ 18117582 (-) True G46092
TU68243 lncRNA downstream 89938 18097068 ~ 18097490 (-) True G46074
XR_006251165.1 lncRNA downstream 120479 18062781 ~ 18066949 (-) True LOC122346732
XR_006251164.1 lncRNA downstream 142798 18040364 ~ 18044630 (-) False LOC122346731
TU68349 lncRNA upstream 58411 18249934 ~ 18250635 (-) True G46140
TU68375 lncRNA upstream 141320 18332843 ~ 18333266 (-) True G46160
TU68387 lncRNA upstream 168156 18359679 ~ 18359981 (-) True G46172
TU68733 lncRNA upstream 412468 18603991 ~ 18686824 (-) True G46412
XR_006251132.1 lncRNA upstream 451199 18642722 ~ 18643353 (-) True LOC122346470
XM_043243032.1 mRNA downstream 31463 18154549 ~ 18155965 (-) True chst7
XM_043242642.1 mRNA downstream 71051 18110646 ~ 18116377 (-) True rp2
XM_043242524.1 mRNA downstream 78313 18099864 ~ 18109115 (-) False jade3
XM_043242525.1 mRNA downstream 78587 18099864 ~ 18108841 (-) True jade3
XM_043241166.1 mRNA downstream 90893 18091115 ~ 18096535 (-) True plcxd1
XM_043241348.1 mRNA upstream 7460 18198983 ~ 18205234 (-) False nipa2
XM_043241346.1 mRNA upstream 7460 18198983 ~ 18204345 (-) True nipa2
XM_043241345.1 mRNA upstream 7460 18198983 ~ 18203575 (-) False nipa2
XM_043241252.1 mRNA upstream 14128 18205651 ~ 18207634 (-) False nipa1
XM_043241251.1 mRNA upstream 14128 18205651 ~ 18207634 (-) True nipa1
XR_006251188.1 other downstream 413321 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other downstream 413321 17743715 ~ 17774107 (-) True opa1
TU67962 other downstream 878950 17307815 ~ 17308478 (-) True G45910
TU67944 other downstream 1000110 17186689 ~ 17187318 (-) True G45895
TU67937 other downstream 1357220 16816640 ~ 16830208 (-) True rgs8
TU68751 other upstream 452783 18644306 ~ 18645134 (-) True G46420
TU68756 other upstream 522651 18714174 ~ 18717488 (-) True G46423
TU68851 other upstream 863623 19055146 ~ 19056131 (-) True G46478
XR_006251201.1 other upstream 923538 19115061 ~ 19149730 (-) False vdrb
TU68985 other upstream 1361796 19553319 ~ 19555931 (-) False tsfm

Expression Profile