RNA id: XM_043241351.1


Basic Information

Item Value
RNA id XM_043241351.1
length 1901
RNA type mRNA
GC content 0.45
exon number 13
gene id atg4b
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12075450 ~ 12082028 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAAAcaattcatttgcatttctttcaCCCGCCCAGATGTCATGAAATTGTTAAAAAGCAGAATTCTTCTATCGTCAACGAAGTACGCGCCTGTTATCGGAGAGGCCGCCTCTACAGTTTGGGAATTTGTCGTTAAATATGCTACTCTCACATACGACTCATTGCGCTTTGGAGAGATCGAAGATTTCCCAGAGACTTCAGAACCTGTCTGGATTTTGGGAAAGCAGTTCAGCGCTCTAACGGAGAAGGATGAGATTCTGGCAGACGTCACCTCACGCTTGTGGTTCACGTACAGAAAGAACTTCCTGCCAATCGGTGGCACCGGGCCCACTTCAGACACCGGCTGGGGCTGCATGCTTCGATGTGGACAGATGATTCTTGGGCAGGCGCTGATCTGCAGGCACTTAGGTAGAGacTGGACATGGAGTCCAGGTCAGCGGCAGAGAGCAGAATATATCAGCATTCTCAATGCCTTCATTGACAAGAAGGACAGCTATTATTCCATCCATCAGATAGCTCAAATGGGTGTTGGTGAGGGCAAGTCTATAGGCCAGTGGTATGGTCCAAATACAGTGGCACAGGTACTCAAGAAACTGGCAGTTTTTGATTCCTGGAGCCGACTGGCAGTTCATGTAGCTATGGACAATACTGTGGTCATTGAGGAAATCAAGAGGTTGTGTATGCCGTGGCTGGACTTTGACAGGGGTGCATGTGCGGCTGCTGAAGAGCCCCTGGAGATGAATGGAGATCTGGAAGGGGCTTGCGCTCTGGCTGAGGAGGAGACAGCTCTGTGGAAACCGCTTGTTCTGCTGATTCCACTAAGACTGGGACTCAGTGACATTAATGAAGCCTATATTGAACCACTCAAGCAATGCTTCATGATGCCTCAGTCTTTAGGAGTAATAGGTGGGAAGCCGAACAGTGCTCACTACTTCATTGGCTTTGTAGGTCATGAACTGATTTATCTCGACCCTCATACCACTCAGCCAGCTGTGGACCCAAGTGAAGACGGTCAGTTCCCAGACGACTCGTACCACTGCCAGCACCCTCCCTGCCGAATGCACATCTGTGAGCTTGACCCCTCCATTGCCGCTGGCTTCTTCTGTCAAACAGAGGATGATTTTGATGACTGGTGTGCACAGATTCGTAAGGTTTCAAACTGTAGAGGTCTTCCCATGTTTGAATTGGTAGACAGCCAGCCATCTCATCTAATTACCGCAGATGTACTTAATCTCACTCCAGACTTTTCGGATTCAGACCGGCTCGAACGCTTCTTTGACTCCGAGGATGAAGAATTTGAGATCCTGTCCTTGTGAAGAACACTTGCATTTGCCAGACTTTCAAAATTCTGTGGTAGAGCCTCTTCAGAGGAAAGAGAAGGATACCATTGACGTCCAAAGCCACTGTGGCATAGTCACCTGCGTCAAACACACAGCTTTCTTCTTAAACAGCTACGCTGACTACTCCGTGTCACCCTGAGTGAGCCGAGGTCAGGTGTCATGCTCACAGGCACTCAGGATCATCAGTATGTATGTACTTAGTCGCATTTATGTGTATCCATATTGAGTCTTAACACTATAGATTAATTTTTAAGTGATATGGTGCCTTTTAACCCCCTTAACTTAAAACACAGGTTTGCCATAACACATTTTATGGGTTTGGTCTGGAGACCTGCTAATCAGATCTGATTTAGCGTTTACtcttaaccaatgaaagtctgAATTTTTGGACCTGTATGAAATTGTAAATGACAACCAAGGAAGGTTGGCCGTTTGCAGAATGGGTAGGATAGCTTGTGTAATTatataagaatgattttgtCTTGATGTTTCAAATCTCTGTACACaagtttattttatgaatatttatttaatcaaatcattaaaaaattaaaacaataa

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0015031 protein transport biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65972 lncRNA upstream 81444 11993558 ~ 11994137 (+) True G44575
TU65963 lncRNA upstream 98170 11976827 ~ 11977411 (+) False G44574
TU65966 lncRNA upstream 98631 11937101 ~ 11976950 (+) True G44574
TU65960 lncRNA upstream 98631 11971581 ~ 11976950 (+) False G44574
XR_006251221.1 lncRNA upstream 369655 11689692 ~ 11705926 (+) True LOC122347449
TU65995 lncRNA downstream 5371 12087399 ~ 12092455 (+) True G44588
TU66023 lncRNA downstream 72294 12154322 ~ 12155432 (+) False scly
TU66030 lncRNA downstream 76034 12158062 ~ 12159895 (+) False scly
TU66049 lncRNA downstream 395096 12477124 ~ 12482182 (+) True G44604
TU66050 lncRNA downstream 395096 12477124 ~ 12482182 (+) False G44604
XM_043241355.1 mRNA upstream 1017 12065298 ~ 12074564 (+) True boka
XM_043241856.1 mRNA upstream 20571 12011095 ~ 12055010 (+) True farp2
XM_043241394.1 mRNA downstream 15652 12097680 ~ 12152964 (+) True kif1aa
XM_043241395.1 mRNA downstream 15652 12097680 ~ 12152964 (+) False kif1aa
XM_043241398.1 mRNA downstream 15652 12097680 ~ 12152964 (+) False kif1aa
XM_043241396.1 mRNA downstream 15653 12097681 ~ 12152964 (+) False kif1aa
XM_043241400.1 mRNA downstream 15653 12097681 ~ 12152964 (+) False kif1aa
XR_006251144.1 other upstream 65472 12002148 ~ 12010109 (+) False LOC122346564
unassigned_transcript_1089 other upstream 102537 11972971 ~ 11973044 (+) True trnai-aau_2
TU65822 other upstream 655251 11415273 ~ 11420330 (+) True G44478
TU65824 other upstream 655251 11415273 ~ 11420330 (+) False G44478
TU65546 other upstream 1202003 10870409 ~ 10873578 (+) False LOC122347096
TU65993 other downstream 5371 12087399 ~ 12092455 (+) False G44588
TU66085 other downstream 684155 12766183 ~ 12780920 (+) False crocc2
TU66063 other downstream 998582 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 1026707 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 1312201 13394229 ~ 13409912 (+) True G44887

Expression Profile