RNA id: XM_043241419.1


Basic Information

Item Value
RNA id XM_043241419.1
length 5060
RNA type mRNA
GC content 0.47
exon number 28
gene id hdlbpa
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11973465 ~ 11998495 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGCcgcaaagcaaaaaaactgtCGTATTTTCTAACGATACACGTCACTAGTTCGATTAAgcaAAAGCTGGCAGGCTGACACGTACGGGCAGCTTTACAGGACGGATTATCTGGTAACTGACCATTTAGCTGTGGCACACTCGGACTCCGTGTAAACGTGGGATTTCGACCATGAGCTCAGTCGCTGTACTTACGCAAGAAAGCTTTAATGAGCATCGCAGTGGCCTTCTGCCAGAGCAGGTCAAAGCTTCTGCGGCAGGCGCTAGTGGTGCTGAAGATGAGGATAGCCTTCCCACCTACAAGGATGCCTTTCCCCCTCTGCCGGAAAAGCCTTTGCCAGAGGGGGTACAGGAGACTGGAAATGCCTGGACGACTAGGATCAAACCTCTCAAGTCCTCAATAATCACCCAGGTTTTCCACGTGCCTCTGGAAGAGCGCAAGTACAAGGACATGAACCAGTTTGGAGAAGGAGACCAGGCTAAAGTTTGTCTTGACATTATGCACAAGACTGGAGCCCACCTGGAACTCTCTATGGCTAAAGACCAAGGCCTCTCCATAATGGTCTCTGGGAAGCATGACGCAGTCATGAAAGCCCGCAAAGAGATTGTGTCCCGACTGCAGACTCAGGCTTCAGCTACTGTGGCCATCCCCAAAGAACATCATCGCTTTGTCATTGGCAAAAGTGGGGAGAAGCTACAGGAGCTTGAACTGAAGACTGCCACCAAGATCCAGATCCCTAGACCCGAAGACCCCAGTAACCTCATCAAGATCTCTGGAACCAAGGAAGGCTTGGAAAAGGCCAGACATGAGATCCTTCTCATCTCTGCTGAGCAGGATAAGCGTGCTGTGGAGAGAATGAACATTGAAAAGGTGTATCATCCCTTCATCACTGGAGCTTATAACAAGCTGGTGGGGGAATTGATGCAGGAGACAGGAGCCCGCATTAATGTCCCCCCACCAAGTGTGAACAAAACGGAGATCGTCATCACTGGGGAGAAAGAGCAGGTTGCCCTGGCCATGGCCAAGATCAAGAAGATTTATGAGGAGAAGAAGAAGAACGCTACCACTATTGCAGTGGAGGTGAAGAAATCTCAGCACAAGTATGTGATTGGGCCTAAGGGTAACACCCTGCAAGAGATCCTGGACAGGACCGGCGTCTCGGTCGAGATCCCACCCCTCGACAGCAGCTCAGAGACAGTAATCCTGCGTGGGGAGCCAGACCGGCTGGGCCAGGCACTCACTGAAGTGTATGCCAAGGCCAACAGCTACACTGTGTCCTCAGTCTCTGCTCCCTCTTGGCTTCATCGTTTCATTATTGGCAAGAAAGGACAGAATCTGGCAAAGATCACACAGCAAATGCCCAAGGTGCACATTGAGTTCACCGAGGGAGAGGACAAGATCACGCTGGAGGGTCCCACCAAAGATGTACAGATAGTACAGGGCCAGATTGAAGCCATTGTTACAGATCTGgTTAGCCGAATGGACTACACAGAGATTAGTGTGGACCCCAAGTTCCACCGACACTTAATTGGGAAAGGCGGTGCAAACATTAACCGCATAAAGGAGCAGCACAAAGTGTCAGTCCGCATTCCACCTGACAACGAGAAGAGCAACCTGATCCGTATTGAGGGTGACCCCCAGGGCGTGCAGGAGGCCAAGAAGGAGCTGCTGGAGCTTGCGTCACGCATGGAGAATGAGCGTACAAAGGACATGATCATTGAACAGCGTTTTCATCGAGCCATCATTGGACAGAAAGGGGAGAAAATTAAGGAAATTCGGGATAAATTCCCTGAGGTCATCATCAACTTTCCTGACCCAACGCAGAAAAGTGACATTGTACAACTGCGTGGGCCTCGCACTGAGGTGGAAAAGTGCACAAAGTTTATGCAGAAAATGGTGGCTGAAATgGTTGAGAACAGCTTTTCTGTCTCAGTCCCCATTTTCAAGcaattccacaaaaatataattggCAAAGGAGGAGCAAATATAAAGAAAatCCGTGAAGAGACTAACACTAAGATTGATCTGCCTGCGGAAAACAGCAACTCTGAAATGATAGTTATCACAGGAAAGAAGGCAAACTGTGAGGCCGCAAAAAACAGGATCCTGGCCATTCAGAAAGAACTggcaAATATTACAGAGGTTGAGGTGTCCATCCCCTCAAAACTGCACAACTCCCTAATTGGCTCTAAGGGGCGTTTTGTGCGTTCCATCATGGAGGAGTGTGGTGGCGTACACATCCATTTCCCAACAGAGGGCTCTGGCATCGACGCAGTGACAATCAGAGGCCCAGCGGAGGAGGTAGAGAAAGCCAAGAAACAGCTGCTGTCCCTGGCAGAAGAAAAGcaaacTAAAAGCCACACAGCTGAGCTTCGTGCCAAACCTGAATACCACAAGTTCCTTATTGGAAAAGGAGGTGGAAATATCCGCAAGGTGCGGGACAGCACAGGCGCCAGGATCATCTTCCCTACTGCCGACGATAAGGATCAGGAACTGATCACAGTCATTGGTACAGAGGAAGCTGTAGCAGAAGCACAGAAGGAGCTGGAGGCGCTTATTAAGAGCTTGGATAACGTTGTAGAGGATTTCATGATTGTCGATCCCAAACACCATCGGTTCTTCGTGGCACGTCGTGGCCAAGTCCTGAGGGACATTGCTGACGAGTATGGTGGCGTTATAGTCAGTTTCCCCCGAACTGCCTCACAGAGCGATAAAGTCACCCTAAAAGGAGCCAAAGATTGTGTGGAGGCAGCAAAGAAACGCATGCTGGAGATGATTGAGGATTTGGATGCTCAAGTGACTCTGGAGTGTGTGATCCCTCAGAAGTTTCACCGCTCCATAATGGGGCCTAAAGGCTCCCGCATACAGCAGATCACTAAAGACCACAATGTGCAGATCAAGTTTCCAGACAGAGATGACCAGCAAGCTCCATCAGCTGATGCTCCAGTTCAGGAGAATGGAGAGGCTAATGGAGAAGTGAAGGAGCCTGCTGATCCTTCAGTCCCAAAGAAGTGTGATGTCATTGTGCTCTCTGGACGCAAAGAGAGATGTGAAGCTGCTGTTGAAGCGCTAAAGGCTTTGGTTCCTGTGACCATTTCGGTGGAAGTGCCTTTTGAGCTTCATCGCTACATCATTGGTCAGAAAGGAAGTGGAATCCGCAAGATGATGGACGAGTTTGAGGTTAATATTCAAGTGCCTGCTCATGAGTTACAGTCTGACATTATCTCCATTACTGGCCTGGTCTCCCACCTTGATCGCGCTAAAGAGGGTCTTCTTGAGCGTGTCAAAGAGCTACAGGCCGAACAGGAGGATCGGGCTCTCAGGAGCTTCAAGCTGACCATCACTGTGGATCCCAAGTATCACCCCAAAATCATTGGACGCAAGGGTGCCATAATCACCCAAATCCGCAATGAGCATGAGGTCAACATTCAATTTCCAGAGAAAAATGATGAGAACCAGGATCAGATTACCATTACTGGCTATGAGCAGAATGCTGTGGCGGCACGTGATGCCATTCAGGCTATAGTGGATGAACTGGAGGAAATGATCTCAGAGGACATCACTCTGGACAGTAGAGTCCATGCTCGCATCATAGGGGCACGTGGCAAGGGAATTCGCAAAATCATGGATGAATTTAAGGTTGATGTTCGATTCCCTCAGAGTGGTGCTGCGGATCCCAATTTAGTGACTGTGACTGGCCGTCCAGAACATGTTGATGAAGCCATTGATCATCTTCTAAACCTGGAGGAGGAATATATGGCTGATGTGGTTGAAAACGAAGCCAAAATGGCCTATATGAAGCCTTCTGGTTCCACTGCCTCCAGCATGGAAGAACCACGAGGCCCATCTAAGGGCTTTGTTGTACGGGAGGCTCCTTGGGCCACTGGCAATGAAAAGGCTCCCGATATGAGCAGTTCTGAGGAATTCCCCAGTTTTGGTGCACCTGTGACTAATGCGAGATCATCTCCATGGGGACCCAAACGTTTTTGAAATGTGTGTCCTTCAATGGTTATGTTGCAACCCCTGGTTCCCCCTTACTATAATCCCTCATTTGACCCCTTTTGATGTGGACGGACCACTTACCTTGGCCCCTAAATATATCAGCACATTTCCTCTGCTCACATTACTTCTGCTAATAAGGGTCTTGATGATTCTCTCAGTGGCCCTTATAAAGGTTCAGTGACCCAGAGTTCACCTGAATCGGTGTGAAGTGATTCAACATGTTTGCATTTTCAGAGAGAATCACAAattgaaggaaaacaaaagtagtCCTGGACATGCTTCAGGTCTGCAACAATCCAGGTTTAATTTTTGATATGACgccattacaaaaacattatttcattacaaaaGTTATTTCTTGGGTTTATTAAGCTGCTCTGTCTCATAGTTGCCTTTGCAATGGGGTTTGGGGAAAGATATACTGTATACCTCTGAAAGATATTGCTTCTGGTTGAAGTCAGAATAATTCATAGGAAATGGGTAACCAGCCGTACTTCTGTCTAGTTGCCTAGGGTAGCCGTTTTGTTGCAGACATTTCAATTGTCTCTTTCCCGTTCCTAATTCCCTAACTCTGGGAAGTGATTCCATGCAGCCTTTACAGCTTTCCAACTTAAAGAGGGACTCTTCACTACAGAAGTATTTTCAAACTGCCATTTTGCTTTGGAAGTCCCAGGGATGTAGTCGCTCGTCAAGTAGGAGTCCCAAGGTTCCCAAAGTCTCTAAAACGTACACTAAACTGcttctattttttgttttgtttttgatattcagaaatcatgtttattaAAGATTATAATATTTGGAAGGATGGGAAAAAAAGACCATTTTGTGCCAATGAAATGTCAAGTAATGTCATGTGTTACTCATTCTTGCTAATGGGTCAGTGTCCAGCCCCTTTTTGTCTTCCAGTTGCTATGCAGGTTGGTCTGAAACCATAGCAATGGCCCTTTTAATAGCCTTATAagaattatgcaaaaatgtcaaaggAAACGATTATGGATAACACTGGAAAATAAACTGtccaaaaagcaaaataaaaattgaaaatgtatctGGA

Function

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65869 lncRNA downstream 544702 11428125 ~ 11428763 (-) True G44501
TU65799 lncRNA downstream 730959 11242277 ~ 11242506 (-) True G44460
TU65798 lncRNA downstream 731433 11241637 ~ 11242032 (-) True G44459
TU65796 lncRNA downstream 734001 11239119 ~ 11239464 (-) True G44457
TU65791 lncRNA downstream 735267 11237962 ~ 11238198 (-) True G44452
TU66210 lncRNA upstream 151924 12149834 ~ 12437749 (-) False G44705
TU66214 lncRNA upstream 151924 12149834 ~ 12198838 (-) False G44705
TU66215 lncRNA upstream 151924 12149834 ~ 12437749 (-) True G44705
TU66216 lncRNA upstream 151924 12149834 ~ 12437749 (-) False G44705
TU66217 lncRNA upstream 151924 12149834 ~ 12217207 (-) False G44705
XM_043241126.1 mRNA downstream 122234 11850258 ~ 11851231 (-) True sox14
XM_043242737.1 mRNA downstream 187303 11734816 ~ 11786162 (-) True hs2st1b
XM_043242736.1 mRNA downstream 264985 11695648 ~ 11708480 (-) False lmo4b
XM_043242753.1 mRNA upstream 57982 12055892 ~ 12062418 (-) False stk25a
XM_043242757.1 mRNA upstream 57982 12055892 ~ 12062418 (-) False stk25a
XM_043242754.1 mRNA upstream 57982 12055892 ~ 12062418 (-) False stk25a
XM_043242756.1 mRNA upstream 57982 12055892 ~ 12062074 (-) False stk25a
XM_043242755.1 mRNA upstream 57982 12055892 ~ 12062065 (-) False stk25a
unassigned_transcript_1088 other downstream 685 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1087 other downstream 914 11972480 ~ 11972551 (-) True trnag-ucc_1
XR_006251151.1 other downstream 904007 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other downstream 904008 11055035 ~ 11069457 (-) False brdt
TU65678 other downstream 1256724 10710045 ~ 10716741 (-) True G44358
unassigned_transcript_1090 other upstream 973173 12971083 ~ 12971154 (-) True trnap-ugg_5
unassigned_transcript_1091 other upstream 973568 12971478 ~ 12971549 (-) True trnap-cgg_1
unassigned_transcript_1092 other upstream 1422737 13420647 ~ 13420718 (-) True trnaa-cgc
unassigned_transcript_1093 other upstream 1422919 13420829 ~ 13420900 (-) True trnaa-cgc_1
unassigned_transcript_1094 other upstream 1423410 13421320 ~ 13421391 (-) True trnaa-ugc_1

Expression Profile