RNA id: XM_043241427.1


Basic Information

Item Value
RNA id XM_043241427.1
length 3201
RNA type mRNA
GC content 0.44
exon number 6
gene id ephx4
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11042046 ~ 11054847 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaggtcacggtttccacaatagcatttatatataatgcacttATCTAAatagcacttttaaaaataatgtctgcTTTCAAAACTTGGCATGGAAATATGTTttaacaccaaatcagcatattgataCTGAAActttagctttgccatcatacGATAATAAATACGTTGTGCAGTACATGAAAACGAGTTATTCGTATAAACCGTATGTTTCACAGCATTACCGTTTTTTACTacatttgaatcaaataaatgcagccttcgtAAAGAAACCATTAAAACGTTTTACTTTTCAAGACCAGGCTATTCTTTTTGAACAAGGGTAAACTTCCGAGTTTGCATGAAATTCAGTGATGTTTTGTGATATTAAATAGCGTGCTTTATTCGAAACAAACGTTGGCagtttatatacaatttttaatatagttGAGAGTTTTCAAAACTGTCGCGACGCTTTCGTATAGCTAAGTTCCAACTTGTTTAGCTCTAATGAATAGGCAAAAACTTACACGCCTGCGTCCAAAAGTTATTTAATCCCCATTTCGTCGTCTTTAACGATAACTTGTGTTTCCCATCCGTTAATAAATCTGCAGCTACATCGTGAACATCGAATATGCTCGAGGCGGAGCTTACAGGCTGACCGCTCTCGGGAAATCGTTATTTTAAATACACCCTGAGCCACAGTACATGATATTGTTGTATCCAGGGTAAAAATACACCTCGACTACACCGCGACAGAAACCCGAGCGCTCCCGCTCTCCCCGACGCGGCTTTCCTGCTCGTTATTACCGGCAGAACTGCGCGCGTGGACGGTCCGCGAGGGCGAGCCGGGCCCAGACGAGCTGCCTGCACAATAACGCGAGAGAGCCTTCTGGTTTTGTCGGTGTAATGGTTCAGTCCGAGGTGCGAACACCTTTGGGACCGAGCGTCTCTTCTGTCGTACGCAAGCGTGACTCCGTAGCGTCTACACAGGGATCCTCCCCGGTCGGGACGCGCGCGCTGACGGTGCGACGGGGCTTTTGAGACGCTGGCAGTTGAGTAAACAAATCGATACAAGCCGCGATCAACAAGCGTGCTCCTGCAGTGATGTAAAGATGGCGAGACTGCTTCACAACTTGCTGCTGTTGACGGTCGGACTGACGCTGAAGATCAGAGTTATGGGATACTGGTCTCTCGTGTACGGATACTGCGCGCTGTGCACCGGCGTAGCGCTGCTCAAACTTGGCTGGAATATCATCCTACGGCCGTCGACAACCTTTCAGTGGACGGTTCGTGAGACACCCCCCGCGTGCCTGAATGACACGTCCTTGGGAACCCACTGTTATGTTAGAATCAAGGAGTCTGGACTCAGATTTCACTATGTTGCCGCTGGAGAACGAGGAAAGCCACTTATGCTGTTTCTGCATGGATTCCCTGAGTTTTGGTTCTCCTGGCGTCACCAGCTGAGGGAATTCAAGAGCGAGTTTCGTGTCGTTGCTGTGGATATGCGAGGCTACGGGGAGTCTGACCTGCCCTCCTCCACTGAGAGCTACAGACTGGACTACCTTGTCACCGACATCAAGGACATCGTGGAGTATCTGGATTATGCCCTTCATCATCCCAGTCAGTTGCTCAAGTCCAGttactacttttttttccagttgcCATATTTCCCAGAGCTGATGCTCTCCATCAATGATTTCAAGGCGCTGAAGAGTTTGTTCACCAGCCGCAGCACAGGAATCAGCTGTAAAGGCCGCTGGCTCACCACAGAAGACCTGGAAGCGTATCTGCATGCCCTCTCACAGCCGGGGGCCCTCACTGGGGCCCTCAGCTACTTCAGAAATGTCTTCAGCGTTCTCCCGCTGAGTCAGAGTGAGGTGAAGTCTCCCGTATTGCTGCTGTGGGGCGAGCGAGACGCCTTTTTGGAGCAGGACATGGCCGAGGCCTGCCGTCTGTACATCAGAAACCATTTCCGCCTCAACATCATCTCTGGAGCCAGCCACTGGCTTCAACAAGACCAGCCCGATATCGTCAACACACTCATATGGACTTTCATTAAGGAGGGAGAAGGCCGGAAAAACTACAGGAACTTATAACGGGGTCCTTCTCCCTCTGAGCTCGCCTGAAGAGAGGGGACCAGGGAAACGCCTGTGAAAGCAAACCAACGTTAATGATTAATGCAATCGTTGTTTTAAAATTTGATACATCTGAGATATAGAAACAAATCAAACTTCAGTGAAgcggaaaaaaaagaacaaaagcacattttgatcGGAGGGGATGCATAGAGAGTAGTGCGTTTAATCTATTTTTCTCAAGTTTGCACATGACATTCGCCTTAAGGTTTCTTGGTGACAGTGTTTAAAAGTGTGTTGCAAAATATCTGTGAGTAAGTTGTATCGTGTGGTGCCTTTCGACATATCGTTTTGCAGCGTAAAAGATGTGCCATGTCTTTTTGAGAGCGAGCTGTGGGGTTTGTATCAGCTCTCTGCACTCTCTGTATCACCTCTCTATCAGGTAGTgatgtctttttcttttgtaccTCTGACAATTCTGGCTTAAACGTTCGAGAATGTCATTATTTTGATCTTCCTGTATGATAAAACAAAGTGATGTTTCGGtattgtacactttttttgtatcTTCTCCTGAACACTGCATCTAAGACAGTAGAACCAGCTCTGCGTCGTTTTGATTTtctaagcaaataaataatagcgGAAACTCACTGACTTGAATAATATTCACTCTCTCTGTTCATATAAGGTCGaactattaaacattaaacagttACTTATAACTTGGATTTAATAAGATGCTTCCCGTTTTTAAGATATGTGGAGTAGATTTTAAGTCTGAATAAATGACAATGGAAAAAAGGAGGTCAATTGTTAATGTTAGTAAATTAACCAAACTAAActaattaaagttaattaatgGGGCCTTGTAAAGTGATACTGGTTTACCCAACACAGCCCTCCATTTTAAATCCAAGTCATTAAGGTAATGCAATAAACTACTCAAGGTGCAACACCAAGTTAGCAGCCAATCATGTTCAATCAAATTCAAACGGtctacaaaataaaggtttctaCTAAATAACACAACAGTCTAgcttttctattattattttgactgCTGTTATAAGTCATGCTGTCAGATTCTTCCTCTTACTGTTCTCCATGACTTCGTTCCGAATAAATGTATTcgtataaacaaca

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65676 lncRNA downstream 56948 10948752 ~ 10985098 (-) False gng12b
TU65672 lncRNA downstream 137749 10694602 ~ 10904297 (-) True G44353
TU65673 lncRNA downstream 139939 10900802 ~ 10902107 (-) False G44353
TU65668 lncRNA downstream 146694 10687060 ~ 10895352 (-) True G44350
TU65655 lncRNA downstream 388676 10646133 ~ 10653370 (-) True G44341
TU65786 lncRNA upstream 177604 11232451 ~ 11232784 (-) True G44447
TU65788 lncRNA upstream 179643 11234490 ~ 11234694 (-) True G44449
TU65789 lncRNA upstream 180028 11234875 ~ 11235096 (-) True G44450
TU65791 lncRNA upstream 183115 11237962 ~ 11238198 (-) True G44452
TU65796 lncRNA upstream 184272 11239119 ~ 11239464 (-) True G44457
XM_043241877.1 mRNA downstream 1017 11016892 ~ 11041029 (-) True btbd8
XM_043241286.1 mRNA downstream 28702 11010998 ~ 11013344 (-) True si:ch73-389b16.1
XM_043242415.1 mRNA downstream 36622 10996397 ~ 11005424 (-) True scinla
XM_043242545.1 mRNA downstream 45986 10990975 ~ 10996060 (-) True zgc:109982
XM_043242881.1 mRNA downstream 53623 10985524 ~ 10988423 (-) True dr1
XM_043241423.1 mRNA upstream 188 11055035 ~ 11069466 (-) False brdt
XM_043241421.1 mRNA upstream 188 11055035 ~ 11069459 (-) False brdt
XM_043241422.1 mRNA upstream 188 11055035 ~ 11069459 (-) True brdt
XM_043241424.1 mRNA upstream 188 11055035 ~ 11069458 (-) False brdt
XM_043241420.1 mRNA upstream 188 11055035 ~ 11069458 (-) False brdt
TU65678 other downstream 325305 10710045 ~ 10716741 (-) True G44358
TU65385 other downstream 896899 10141611 ~ 10145147 (-) False cd7al
TU65247 other downstream 1014411 10025578 ~ 10027635 (-) False c6h17orf67
TU65030 other downstream 1769741 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 1771124 9269188 ~ 9270922 (-) True G43899
XR_006251151.1 other upstream 188 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 188 11055035 ~ 11069457 (-) False brdt
unassigned_transcript_1087 other upstream 917633 11972480 ~ 11972551 (-) True trnag-ucc_1
unassigned_transcript_1088 other upstream 917862 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1090 other upstream 1916236 12971083 ~ 12971154 (-) True trnap-ugg_5

Expression Profile