RNA id: XM_043241459.1


Basic Information

Item Value
RNA id XM_043241459.1
length 3478
RNA type mRNA
GC content 0.49
exon number 17
gene id pde4ba
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14285497 ~ 14402960 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATCCTCCTCTGCTTTGACAGGCTCAGTGAACGCTCAGCATCCAGAAGCGAAAGCGCGAGCCTGGCGCGCGTGAAAACCGCCCGCGTCTTGCCAAAGCGAGACGGGAACCGAACCCCAGCATCTTTTTCAACGTAGTTGGGGAGGGGGTGCTCGTTCCTTCGCGGACTCCGTGTACCGGTTCAGACAGTCTGAGAGCAGCGGTGTTGAAGGACAGAAGAGGAGCGGGTTTCTATAGCGGGACAGAAGATGCCGCTGCTTCGTTGACGGCTCCGGTCCACCTCatggctcacacacacaaaaacaccacGGCGGAACACTCGTGTTCTTGATCACGAGTTTAAAACGGGATCCTTTTGCGCTTCTTTTGTCTCCCACGTGCAAGAAAGTGGATCCGTATTTGAGGAGTGTCAGCGGAGCAGGCCTGTGCGAGACAGGGAGAGAAAAACTTCACAGAAGATGAGGAAAAGCCGGAGCGTTTTGACTGTGTCACCTAATGAGGACAGTAAAGAGCCTCCGGACTGCAGACTGAGTGAGTCTTTCACCTCCTCGGGTTGCACGCTGGGGGTGGACCTGCGGCGGAGGCGGCGCCGTTTCTCTGGTAACCTACAGTTGCCTCCTCTATCATGGCGGCAGACGGAGAGGTCCCGCAGTCCAGATGACGAGATCATGGCAAGACCAACGACACTGCCCTTCATTACACCCCCTCGCATTGACATTACACCTGTGGACTCTGAATGTTTCGATGTGGAAAATGGCCCGTCTGCGAGCTGCAGTCCTTTGGACCCCCAGGCCTCACCGGGTTCTGGCCTGGTTCTTCACACAAACTTTCCCGGCCACAACCAGCGGAGAGAGTCCTTCCTCTACCGCTCAGACAGCGACTATGACCTCTCACCAAAGTCAATGTCTCGCAACTCTTCTATCGCCTCAGAACTGCATGGGGATGACTTGATAGTCACACCTTTTGCTCAGGTTCTAGCAAGCCTTCGAAGTGTCAGAAACAACTTTACAGTCTTGACCAACGTTCAGTGCTCATCTAACAAGAGGTCCCCCGTGTCCAACCAGCCCCCCATCACCAGAGTGTGCCTACCTgACGAGTCCTACCAGAAGCTGGCCGTGGAGACCATGGAGGAGCTGGACTGGTGTCTGGATCAGCTGGAAACCATCCAGACGTACCGCTCCGTCAGCGACATGGCCTCCAACAAGTTCAAGAGAATGTTGAACAGGGAGCTGACGCACCTCTCTGAGATGAGCAGATCTGGCAATCAGGTGTCGGAGTTCATCTCCAACACCTTCCTAGACAAGCAGAATGACGTGGAGATTCCCTCGCCTACACCTAAAGCCCGcgagaagaagaaaaagcaaCAGCTGATGACTCAGATCAGTGGTGTGAAGAAAGTATTCCACGGGCCCAGCCTCAACAGCGGCATTGCTCGCTTTGGCGTCAAAACCGACAAAGAGGATTTACTATCAAAGGAATTAGAAGACCTGAACAAATGGGGCCTGAACATCTTTACAGTTTCCGAGTATTCTAACAACCGGCCTCTCACTTGCATTATGTACGCCATCTTCCAGGAACGAGACTTGCTTAAGACATTTAAGATCCCTGCAGACACTTTTGTGACATATATGATGACCCTTGAGGATCATTACCACCAAGATGTGGCCTATCACAACAGCCTTCACGCTGCTGATGTGGCCCAGTCAACTCACATTTTGCTGTCCACACCTGCTCTAGATGCTGTTTTTACGGATCTCGAGATTTTGGCAGCCATTTTTGCAGCAGCTATTCATGATGTGGACCATCCTGGAGTTTCAAACCAGTTTCTCATCAATACAAACTCTGAGTTAGCACTCATGTATAACGATGAATCTGTTTTGGAGAACCACCACTTAGCTGTGGGCTTTAAACTTCTCCAAGAAGACAATTGCAACATTTTCCAGAACCTCACTAAGAAACAGAGTCAATCACTCCGAAAGATGGTCATTGACATGGTACTTGCCACAGACATGTCGAAGCACATGAGCTTACTGGCCGATCTGAAGACCATGGTAGAAACAAAGAAAGTGACAAGCTCAGGAGTTTTACTTCTGGACAACTACACAGACAGGATACAGGTTTtgaggaatatggttcactgcgCCGATCTGAGCAATCCCACCAAGTCTCTAGAGTTGTACCGGCAGTGGACCGACCGCATCATGGAGGAGTTCTTTCACCAGGGtgacagagagagggagcgtGGCATGGAGATCAGCCCCATGTGTGATAAACACACTGCCTCTGTAGAGAAATCACAGGTTGGTTTCATTGACTACATCGTCCACCCGCTGTGGGAAACCTGGGCCGACTTGGTGCACCCGGATGCCCAGGATATCCTGGACACGTTGGAGGATAATCGGAACTGGTACCAGAGCATGATCCCCCAGAGCCCTTCCCCACCCTTCTACCAGTCCGACAAAGAAGGCAACGGTGGGGGTTCAGGACCTGACAAGTTCCAGTTTGAGCTCACGCTAGAGGAAGAGGACTCGGAAGGCACAGAAAAAGACGAACAGAGCCAGGGTGATGAGGAAGAGGAtgtggaagaagaagaagacagagGGGAAGAAATGGAATCCACTACACACATCCAGATAGTTACCGAAGACGCCTCACCAGTCGACACATAGGACTCGGCGTCTCTTAATAGGCGGtagctgtttttttcccttgcGAGAGGAGCAATCTTGCAGttgatgctttttaaaaagccCACATGAGGTGCTTTTTTAGGCCCTCGTGGGAGGAGGATGTCTTGCCCTCCTTGCACTTACGTTTGGAGACAGTTCGGTAGGAGCTCTCAggaaataaatgctgcagaCATTTTGGACCTGAACAATTGACAGGCGACTTTGATAAACATGAAGGATTGGGGCCAACATggacagtttgttttgtttgtttacctgGTGGTGAGGAGTAGACACTACTGAGaggatttctctttttttttgtaccaacACAAACTTTTTGTAAAGCTATGGGTGTGTGATGAGGTCAAACACGAACTACTGAAGAACAAGTATTTGTAAAGAGAGAAACTGTTTACTTTTCTGTACCATTTGTCTAAAGACTGTGTGCCTTTTTACTATTGTCTTTTTAatagtcttttatttattgaacacGTTTTAGTATAACTGTACGTTGAAATGTTTTCGTTTTCTAAAGCAAACCAGACAGAACATGCAGAATTGTTTTATATCTACGCTGGAGAGAGAACTTAGTGTCTTCCTTTGTTTGGCAATATAACTTAATAATCCAAACATCTGACAAACGATCAGAAAACTATGAGATGATGACAGAGGCACTTTCTGTTTATTCTAGCTACATTTGTGtcagactttttaaatatgagcacaAACTCTGTTTATTTGGATCCGTAcatcatcccatccacattagGGTAAAAACAAATCGTGTTAGGTAAATGCattattgca

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K13293 PDE4; cAMP-specific phosphodiesterase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251154.1 lncRNA downstream 6468 14263789 ~ 14279029 (-) False LOC122346673
XR_006251155.1 lncRNA downstream 6468 14263789 ~ 14279029 (-) True LOC122346673
TU67011 lncRNA downstream 6471 14263867 ~ 14279026 (-) False LOC122346673
TU67012 lncRNA downstream 6471 14263867 ~ 14279026 (-) False LOC122346673
TU67013 lncRNA downstream 6471 14263867 ~ 14279026 (-) False LOC122346673
TU67022 lncRNA upstream 90161 14493121 ~ 14494022 (-) True G45277
XR_006251130.1 lncRNA upstream 248756 14651716 ~ 14656031 (-) False LOC122346442
XR_006251129.1 lncRNA upstream 248756 14651716 ~ 14656031 (-) True LOC122346442
TU67118 lncRNA upstream 502542 14905502 ~ 14905708 (-) True G45355
TU67394 lncRNA upstream 699730 15102690 ~ 15154616 (-) True G45532
XM_043242907.1 mRNA downstream 84754 14197692 ~ 14200743 (-) True ttc4
XM_043242836.1 mRNA downstream 95168 14179872 ~ 14190329 (-) True lurap1
XM_043241204.1 mRNA downstream 157180 14126574 ~ 14128317 (-) True cldn33b
XM_043242271.1 mRNA downstream 245334 13986047 ~ 14040163 (-) True lrrc7
XM_043241823.1 mRNA downstream 499596 13722309 ~ 13785901 (-) True pex5la
XM_043242424.1 mRNA upstream 11849 14414809 ~ 14450272 (-) True lepr
XM_043242425.1 mRNA upstream 11849 14414809 ~ 14450211 (-) False lepr
XM_043242423.1 mRNA upstream 11849 14414809 ~ 14432266 (-) False lepr
XM_043242422.1 mRNA upstream 11849 14414809 ~ 14432266 (-) False lepr
XM_043241211.1 mRNA upstream 56029 14458989 ~ 14485480 (-) True dnajc6
TU66983 other downstream 92331 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 604223 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 817558 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 817932 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 818271 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67455 other upstream 926007 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 1200950 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1656008 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1656933 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 1958240 16361200 ~ 16364020 (-) False fam183a

Expression Profile