RNA id: XM_043241466.1


Basic Information

Item Value
RNA id XM_043241466.1
length 2965
RNA type mRNA
GC content 0.41
exon number 16
gene id slc6a22.1
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20116875 ~ 20125261 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aacacacacacgcatgtgaTTCTACGCTCTCGGTTCTGTATGGACTCGTTTCCCTTAACGAGAGGAGGAGAGTGAGCGAGGGGTGGGCTTCAGCGGCTGTGTTATAACGACCGAAACACACTGAATTAAGCATAACTTCATGGCCAAGGTAAACGCGGTAGACTTCCTGAACTTTTGACCAGTTTCCTCCATCAGAAGTATTTCACTTGGCACCCGGCGTCTCCTCGGCGTGGGTTGAAGAGCACAAGTGTTCGGCTGCTGAATGTAGGCCAAAGGGCACGAACAAAAGCGCAATAACTGAtgaCATGGAAATGCAACATGATCCAGATTTGCAGTTTAAACTGGCTTATTCAGATTCAGAAAGAATCGACACTGGCATTAAAACCCAAGCGAGAGGCCAGTGGTCCAGTAAAGTGGAGTTTATCTTAGCTGTTGCTGGCCAGATCATTGGTTTGGGAAATGTGTGGAGATTTCCATATCTGTGTTACAAGAATGGAGGAGgaGTGTTTTTCATTCCGTATGTGATCTTTCTGTTTGCCTGCGGCATTCCTCTTTTTCTTATGGAGACCGCTTTGGGCCAGTACACCAGTCAAGGGTCTGTTACCTGTTGGAGGAAGATCTGCCCACTATTTGAAGGTCTGGGTTACGGGAGTCAGGTGGTTGTCTTCTATTCCAGTGCCTACTACATCATCATTTTGGCCTGGGCTTTCTTCtatctcttctcttcttttagTGGTGAACTGCCATGGGCTAGCTGCAGGAACTGGTGGAATTCAGAAAACTGTGTTGAGTTTAACAGAATAGGAGGGACAAGAAACCTGAGCTTTATGGAAAATTCATCCTCCCCTGTTAAAGAATTTTGGGAGAGGCGAGTATTGAATATAACCGGAAATGTAAATGAGCTGGGAAGTTTGAGATGGGAGCTGGCTTTGTGTCTCCTGCTGGCCTGGATCATTTGCTACTTCTGTGTGTGGAAAGGAGTGAAGTCCACGGGCAAGgtTGTGTATTTCACTGCTACGTTTCCCTATGTTATGCTGCTGGTGCTTCTGATTCGAGGTCTTACATTGCCTGGAGCCATTGATGGCATCAACTTCTACCTCTATCCAAATCCAGCACGACTTACAGACCCACAGGTATGGATGGATGCTggaacacaaatattttactCTTACGCTCTCTGCATTGGGTGCCTTACAGCTTTGGGAAGctacaataaatacaacaacaacTGCTACAAAGATTGTGTTTATCTGTGCCTGCTGAACAGTGGAACCAGTTTTGTAGCTGGCTTTGCTATCTTTTCAGTTTTGGGCTTCATGGCCTTCGAACAGGGAGTCGATATTTCAATGGTAGCAGAGTCAGGTCCTGGTTTGGCCTTCATTGCATATCCACGAGCTGTAGCTATGATGCCTATGTCTCAGCTGTGGTCCATATGTTTCTTCCTCATGATTATTCTGTTGGGGCTTGACAGTGAGtttgtggGTTTGGAGTCTCTCATGACAGCCATAACAGACATGAACACCAATTTCTTCCTCCAAGGACATCGTCGTAAACTCTTTCTCCTCCTCATTTGTGTGGGCTGCTTCCTCATTGGCCTCCTGATGGTAACAGAGGGTGGCCTGTATGTCTTCCAGTTATTTGATTACTATTCCTGCAGTGGAATGACCCTCCTCATATTTGCCATTGCACAGTCGATATGTATTGGCTGGTTTTACGGTGCCGATCGTCTGTATGAAAATATTGTTGGCATGATCGGTTATCGTCCTTTAACACTAATGAAATACTGTTGGAAATATATCACTCCTATTGTGTGTATAGGAACATTTATCTTCTCTTTGGTCAAATTCACTCCTCTAAAGTTTAACAACACATCTGAATACCCATGGTGGGGTTATGCTGTTGGCTGGTGGTTCACCCTCTCCTCGACATTGATGGTTCCCATATGGATGATCTACGTCATCCTTATCACTCCTGGTACACTGAAACAGagactGCGTGTCCTTTGCACTCCAGCAAGCGATCTACCTTTGACAACAGAAAGACGAAAAGAAACCCTGTGACTTCTGTGACCGTACAAAGTGTCCTATGACTGATAGAGAAACATTGAGGTGAAGAAAAACATCCTTGGGCTGTATTTTGGACAACTTTTGATATCCTTAAGTGCCTTTGAAGATACACATTCTTGTGAGATCTCAAGAAGGCGCAAACACAAACTGTATATGACTGTCAAGTTATTGATTTTTCCTATCTTAGATTTTCAATTGCAAGAAATTAAATGtggatttaaactgaaaatgaaagatgaaatgaaagCTCAACTTCCACGTTCGACTGTATCCAAGGAAAAACTCAGTTTGACGTCATTCTTAAGTGTGATAGCATCAACAACTTACTGTATCATAAACATTCACAAGATATCAGTTCTTCTATGAgatagaaaaaaactgtttattatcATGAACCAATGGACCAATGTTCATTGTTGGTGTATGATTAGAAAATGTTGGATAATGTGTTAACTTTCAGTTAGAGAGACTAACCAGAGCTGCTCACTATGACATACTTTATGCCTTTTTAAAAGAAGTGCAAGGCACATTTGGTTAAATTTCTAtcaaaactttaaatgtaacagTATTTTAGAATAGTAACTTTTTTATGGGTCAATCATGCACTTGCCAATTTTGTGCCTGTAGTTAAGTGCTGGTGTTTTAAGAAAGTATTAGAAAAAATTatgttggtttattttattacaacattTGTAATGCATTCAAGAGAAAATATATCCatattttgcttagttctgcttggatgtacagtatattctatattttacaatatgtatttttagttaaatgcatattttaagggAATGTATGTAGGTCGTTTAAGcttatgtgcatttttataacTGATGCTATTGAAAGGTCTGTGGTTAATGTTCTAATAAATATCCTGTTTAAATCAA

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69354 lncRNA downstream 1616 20054866 ~ 20115259 (-) True G46816
TU69358 lncRNA downstream 14422 20100646 ~ 20102453 (-) False srsf3a
TU69356 lncRNA downstream 116250 19998632 ~ 20000625 (-) True mustn1a
TU69340 lncRNA downstream 148415 19968246 ~ 19968460 (-) True G46803
TU69329 lncRNA downstream 160145 19899705 ~ 19956730 (-) False LOC122347177
TU69397 lncRNA upstream 2687 20127948 ~ 20129839 (-) True G46836
TU69403 lncRNA upstream 24286 20149547 ~ 20152787 (-) True G46838
TU69407 lncRNA upstream 48277 20173538 ~ 20174291 (-) True G46842
XR_006251237.1 lncRNA upstream 114541 20239802 ~ 20240436 (-) True LOC122347561
XR_006251169.1 lncRNA upstream 120447 20245708 ~ 20247348 (-) True LOC122346791
XM_043242173.1 mRNA downstream 14416 20096024 ~ 20102459 (-) False srsf3a
XM_043242175.1 mRNA downstream 17065 20096024 ~ 20099810 (-) True srsf3a
XM_043242174.1 mRNA downstream 17081 20096024 ~ 20099794 (-) False srsf3a
XM_043242170.1 mRNA downstream 21358 20084841 ~ 20095517 (-) False rab44
XM_043242169.1 mRNA downstream 21358 20084841 ~ 20095517 (-) True rab44
XM_043242486.1 mRNA upstream 112013 20237274 ~ 20238660 (-) True LOC122347299
XM_043242618.1 mRNA upstream 298450 20423711 ~ 20431177 (-) True hemk1
XM_043242842.1 mRNA upstream 657183 20782444 ~ 20786555 (-) True cav3
XM_043241340.1 mRNA upstream 669985 20795246 ~ 20799151 (-) True gpr61l
XM_043242971.1 mRNA upstream 674833 20800094 ~ 20805651 (-) True parp3
XR_006251194.1 other downstream 14417 20096389 ~ 20102458 (-) False srsf3a
TU69304 other downstream 269477 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 450369 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 560944 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 560944 19553319 ~ 19555931 (-) False tsfm
TU69405 other upstream 36179 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 403918 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2614711 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 2614711 22739972 ~ 22750947 (-) False tardbpb
XR_006251208.1 other upstream 2614711 22739972 ~ 22750947 (-) False tardbpb

Expression Profile