RNA id: XM_043241472.1


Basic Information

Item Value
RNA id XM_043241472.1
length 3851
RNA type mRNA
GC content 0.45
exon number 31
gene id sfi1
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20016546 ~ 20025871 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGCAGTTATGGTTCGTTGTTGGTTTTTGTTAGTACGATGACAACTGCAGTAGCGTTAACGCCTTAAATTgactctattttatttattttaattcaaccAAGTATAGTTCAAGCACCGGATGCTAGacaatgatttgatttgatttgggTGAATGATCTATTAAAGATGCAAACGACAAGACTAAAAGTTGGGAAACAGTTTGGTGGTGTAGAAAAGAACCGGCCACGCAAAACACCAATACGGAAAAACACTTACCGGGTCGGATATACTTGGAACCGAGGTGGTAGACTTAAAGAGCTGAGGATACGGCACCTTGCTCGAAAGTTTCTTCACTTGTGGATTCAGAAGACATTTGGACGAATAACAACATCTCAAGCCAGatctCATTATTGTAAGGTGGTCTTGAGGAAAACATTAGTGGCTTGGAAAGACGAGTGGTGGCATTCAAGAAAGGAGTGGACTCTAAATATAAGGGCAGATTGCCATTATACGTATATGCTGTTTAGCAAAACATTTCAAGCTTGGCAGGATTATGTCGCTGtccagagagaagaaaagaaaaagcttcAGCTTGCAATCAGATTtgAGAAAAAGCACAAACTGCGTTGTGTGTGGAATGGTTGGGAAATGTACCTGGACATGTGTCGCATGAAACGCAGGATGCAGGAGGCAGCAGTGCAGCACGAGAGACTCTCTATACAAAAGTGGGTTTGGACTGTGTGGAATATGACACTACAGAACAGGGATGTGGAGTACCATCAAGAAGATCTTGCTTTGCAACACTGGGCTCACACTGTCCAGAGCAGAGCATGGCTGCACTGGAGAGATAGGATAAAACAAGCCTGTgctctgaaagagaaagagtctAAAGCTCATCGTCACTATTGTCTTCAACTGTTAAGACATGCACTGCATGGATGGCTCAGACACACAGAGAACCGACAGGCCAAGAGCGAGAAGACAGCTGTTGCTCAGGATGTATGGCGTATTGCTGTGCTGAAGAAGTTTTGGTGTCGGTGGAATGATGTACTGCAATCCAGGCATGCAGAGAAAGACCGAGGACAGAGAGCAGACAAACTGGCCCAGCACGGGTCCCAGCGGCTGGCGTTCTCACACTGGAGACACTATGTCAGTTTGTGCTCACAGAAGGCTAAGAGGGAAAAGGCTGCATTGCATCACAGACAACTCCATCTTTTGCATTTGGGTTTAAGAGGCCTTGCTCTAAACGTCACTCAAAGTAAAACTCATCGTCTCAACAAGAACATCAGTGTCCAGCATCATCGTCACATTTTGCTGGTGAGGTATTGGAAAGTCTGGCATCTGCGCTTGGATCAGGCTGAGGACGAAAGCCTGCAGCCCCAAATGAGTGTTGCACAAGCTCATCACAAAATTTCTGTGCTGAGATCATGCCTTCATCATTGGAGAAAACGTCTCACAGAGCACAGACAAATGCTGGAGTTGGAACTACGTGCTGATGCTTGCTTTGCTCGACGTATCTTTCCACAATGTGTAAACACATGGATGGAGTTTGCAACACAACGCACTGAGAAAcgaggacagaaagagagagctgAACAACATTACAGGCAGCAGACTTGCAGTTGGGCATTTTACACCTGGTGGGGAAACCTAGAGGtacagagagaacagagacaTGCTGAAAGAATGGCTGTGTTGCATTCCGAGCATGTGTCTTGTGCTCGTGCCTGGTCTCGGTGGTACGCTGGTGCTATACAGCGTAGAGACGAGAGATTCAAACAAGCAGCAGCAGACTCACTTTACGAACACTCTCTGCTTCGCAAGGCCCTGAACCAGTGGAGAAACCTTGTTGCAAGCATACAGACCAGTCAGAGACATTTCCAGCAGGCAGAGGATCATTATGGACAGCACTGTCTGAGAAGAACCATGGCAGACTGGCATCAGTACATAGATTGCAAAagacagaagaaagagaaactTGCACAAATGGAGAAACATTACAACAGCAGATTGCTCAAACACGCTTTAGAGGCTTGGAAGTCACACCATTTACAGACTCAGTCGATCAACCAAAATGTGGAGTGGCGTTATCAGGAGCATCAGCAGCACCTTGTCAGAAGAATGTTCTATTTGTGGAGGATAAACGTGGCAGAGTTgatggaagagaaagagaaggaaaacagAGCAAAGTGTTTTTCTCAAAAGCACCTTCTATCTCAGGTGTTTCTGGCATGGCGACAGAGAACATTATCTTCTCATCTTCACCATCACCAGCAGGAGGAAGCTCTGAAACAAGCTCGAACACACCTGGATAAATTTCGCATGCAGGTGGCTTTCAGAAGATGGAAAGAGCGAGGCACAGAGGTAAAAGATGACCGGATGGAGAATGAGAGGGCCAGGGAACACTACAGCAGAACCCTGGGAAAAAGAACCCTCAACACATGGATCACTAATACTCACCATCAGAAAACCTATCAGgTAATGAAGAAAAGAAGCTTTGAGCTTCACAAGTTGAGGATTTGTCAGCGCATTTTTGTCTGCTGGAAAACACAGCTGCAGAACAGAAGAACAGAAGCTGAGAAAACTGAGACTGCCCTTTGGCATTGGTCCCTCAACCTACAGGCCAAGGTATTTTACATGTGGAGGCTTTGGATTTCAGAGCGGCAGAGAAAACAGAAGCGTTTGACTGAGGCAGCTCAGTTTTACAGAGATGAACTGTTGAGAGAGGGTGTCACAcacatcctcacacacacagcgcacaTGAGTGCATTCTCAACGAATATTGCCCAGCACAGCTATGAACAGAGTTGTCGACAGCTGCAGGAAGTGGTAAGGCGGTGTGCTGTACGATGGAAGCAGCGGGCACTGTGCAAGCCTGTCAAGAGTAAAACAGACAGCCACCCCAAGAAgagtgtgtctttttttctacCAGAAGAACACACCCCCTTCCCCACCCTTTGTCCAATCAGAAGCCAAGCAGCAGAGCACAGGCAGAAAGATTCCATCATCAGTCAGCTGGGGGCAGTTCGAGCATCTAGATTGCAACCAAGAAGACCAGATGACCTTCTGCAGTCCCCACTCAAACCTCTGCCATGTGACTTCAAGATCAGCAGCCCACTGGAGTCATCTGTAACAATGCTACAACCAAAGGTCCCCCCTTTCAAACCTGGCACTTCTGGATACATCACCACTACTGACCAGGACATACTGCTTCCTCCATCTTCATTTACTGTCTCTTTAGCACATGGCAAGcAAAGGAGCTTACATGATCAGGAGCTTCCACTGCATTCTATGCATTTTACTTCCCACCCTCCCCAAACACAAGGTGTACATGAGGAAGATGAGACTGTAGATGTGGAGCAAACAGAAAATCTCACAAAAGAACTACTAGACATTAGACTGGCAATGCAGAGGTACCAGCAAGACAGAAAACAGCTACAgacATGGCGTAAGCTCCAAACGGTCTTGAGTAACTGGCTTGAAACAACAGGCATTGAGGGAGAAACTGAGGAacgagaaaacattttaaaggagtTAAGTGAGCTTGAGGGGCGCATGTCTTCTCTGTCTTCAAgattaaacaaacagaaacccATCATGGTTCGCTATGCTGCCAGAGTTAACACCATCCAGAGCCAGCTGCTACTGTCCGATGTTAATACAAAAACACCCACTGAGTATGGAATATAAGTATAAAAGTTTATATTGTGCAACCATTATATGATGGCAACCTCATTCCAGAAGCAATTTCAGATGATGATATATTTTTagagaaaacaatatttcagttatttatgtatttaaaggcaatgtttgtaaatatgtatttcgtttctaataaagcattaaatcaCTTATTTGAAGGTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69356 lncRNA downstream 15921 19998632 ~ 20000625 (-) True mustn1a
TU69340 lncRNA downstream 48086 19968246 ~ 19968460 (-) True G46803
TU69329 lncRNA downstream 59816 19899705 ~ 19956730 (-) False LOC122347177
TU69310 lncRNA downstream 135958 19880238 ~ 19880588 (-) False LOC122347207
TU69309 lncRNA downstream 137869 19877328 ~ 19878677 (-) True LOC122347207
TU69354 lncRNA upstream 28995 20054866 ~ 20115259 (-) True G46816
TU69358 lncRNA upstream 74775 20100646 ~ 20102453 (-) False srsf3a
TU69397 lncRNA upstream 102077 20127948 ~ 20129839 (-) True G46836
TU69403 lncRNA upstream 123676 20149547 ~ 20152787 (-) True G46838
TU69407 lncRNA upstream 147667 20173538 ~ 20174291 (-) True G46842
XM_043241473.1 mRNA downstream 311 20009514 ~ 20016235 (-) True zgc:172271
XM_043241477.1 mRNA downstream 7192 20006054 ~ 20009354 (-) True sirt4
XM_043241475.1 mRNA downstream 11861 20001100 ~ 20004685 (-) True rft1
XM_043241479.1 mRNA downstream 15908 19998809 ~ 20000638 (-) False mustn1a
XM_043241480.1 mRNA downstream 15920 19998809 ~ 20000626 (-) False mustn1a
XM_043242935.1 mRNA upstream 25133 20051004 ~ 20056755 (-) False slc2a11a
XM_043242934.1 mRNA upstream 25133 20051004 ~ 20056699 (-) True slc2a11a
XM_043241333.1 mRNA upstream 42999 20068870 ~ 20070207 (-) True hdhd3
XM_043241205.1 mRNA upstream 45039 20070910 ~ 20073497 (-) True trub2
XM_043242170.1 mRNA upstream 58970 20084841 ~ 20095517 (-) False rab44
TU69304 other downstream 169148 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 350040 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 460615 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 460615 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 866816 19115061 ~ 19149730 (-) False vdrb
XR_006251194.1 other upstream 70518 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 135569 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 503308 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2714101 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 2714101 22739972 ~ 22750947 (-) False tardbpb

Expression Profile