RNA id: XM_043241475.1


Basic Information

Item Value
RNA id XM_043241475.1
length 2303
RNA type mRNA
GC content 0.42
exon number 13
gene id rft1
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20001100 ~ 20004685 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAAATGGCAAATCCATTAGGAGACTACTGTAGTACAGTGCTATAGTATAATTTCTGTATAATGGACCGAATGTAACGTTTATCACCGGCGAATCTCGGTGATGTTGCTGATAGTgagtttaaataaacagttgaGTTGAAAAGTAAAGCTTACAATGGGCTCAGAGGATGTGCTCAAGAGTGCTTCAAAACTGGCCTCTTATAATGTTCTGCTTCAGGTGATGTTTCGAGTATTGACGTTTCTCTTGAACGCATTTACTTTACGTTTTGTGTCTAAGGAGCTGATAGGTGTGGTAAATGTCAGGTTGATGCTGCTCTATTCCACGTTGGTGTTTCTGTCTAGGGAAGCGTTCCGGAGGGCGTGTCTAAGCGGCGACGGGGCGGGGCGTAACTGGAGACAGGTTATCAATCTATTATGGCTCACATTTCCTGTGGGTTGTATGTGGGGTGTGGTGTTGGTGTGTGTCTGGTGGTGGCTGCTCCAGGCACCTGATCCAGAGTCCATCCCTCATTATGTCCCAGCTGTTGGATTGTTCAGCTTGGCTGCACTTACAGAGTTGCTGGCTGAACCTCTCTGGGTTCTTGCCCATGCACACATGTTCGTTCGTTTGAAGGTGATTGCTGAAAGCTTAGCCATGATTGCTAAATGTCTTGTAACTGTAATGATGGTGGTCTCAGCACCTCAGTGGGGACTCTATATCTTTTCTGCAGCgcagTGTGTCTATGCAGGGTTTTTGCtgctttgttacattttatacttcATTCGTTTTCTTGGCTCAGAGGaggcagagaaaaaaatgttcccTGTGAGTCGCATAACAGACCTTCTGCCATCTAGAGTGGATCATGAGccaCTACTAAACTGGAAGTTGACCACACTAACCTGGAGCTTTTTCAAGCAGTCATTTCTCAAACAGATACTTACAGAAGGCGAGCGTTATGTGATGACGTTTTTGAATGTGCTTAACTTTGGAGATCAGGGTGTTTATGATATAATAAACAATCTGGGCTCAATGGTAGCAAGATTCCTTTTTTTGCCGATTGAGGAGAGTTTCTATGTGTTCTTTGCTAAAGTCCTGGAACGTGGACGAGATGTACAACATCAAAAACAAGAGGAAGTTTCCATGGCAGCTGAAGTATTGGAATGTCTTTTGAAGCTGGTGCTTTTGGTTGGTCTTATCATCACAGTTTTTGGTTATGCGTATTCTCATCTGGCACTTGACATCTATGGAGGGGAACTTCTGAGCAGCGGAGCTGGGCCAGCTCTCCTACGGTGTTATAGTTGTTATGTTCTGCTGTTAGCCATTAATGGAGTAAcagagtgttttgtttttgctgccATGAGCAAAGAGGAAGTTGACAGATACAATCTTGTGATGCTGGGACTCTCAGCCTCATTTCTTCTCCTTTCTTATTGGCTAACGTGGATGTTAGGAGGCGTTGGCTTTATTTTGGCTAATTGCTGCAACATGGCTCTACGAATTACTCACAGTATTGTTTACATACATCGGTATTTCCTGCAGAGTGAATACACACCCCTGTGGGGGCTCCGTCCACATTCTGCTGTTATCATTGCACTTGGCGTGAGCTCAATCCTCACAACCTGCTCAGAGagCATGTTCTGCTGTGATGTTGGCTGGTTGCTAAGGCTGGTTCACGTTGCTGTGGGGGCGATTTGTCTCCTGGGAGTGGTCATCACCGTATTTCTGACAGAAACAAGACTTGTGCAGTTTGTCAGGACTCAGCTGTTACCAAAATACAGCAAGAAACGTACATGAGTTTTTCAACTTCACCGAGGATCATATTGTGGACCAGATTCATTGattgcaaaacaaacacagagaatATTGTGAtgtaattcaaaaatattaagggGTCGCCCAGTACGTAACTACTGCTCCAATGTGCCTGTCATTCCTTACGATTGTTCATCTTTTGCACATTAATGCTTGTTATTAGACATACAGAAGGTGTCTCTTGACTATTTGCATAATGTTACTGCCAGATATACTGTAGCTGTGTAAATCTGTGGTGAACTTTATATGAATGATTGATTGTATAAAatggttatatataaataatttaatggtACTGGGTACCTTTGTCTTAGTAAGGTGTGAGATGGACTGAAAAATATTATCTGTTATCATAATATCTGGGGGggaaaaacaaccttttttcATGACTGTACATTGTTTAGTTTTAGGGTTTTTTCTGACAATTTCTGAGAGCTTAACTGCatcaacattacattttaaaatatttttttgatgtatttttgatcaaataaatgcagtcttgat

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005319 lipid transporter activity molecular_function

KEGG:

id description
K06316 RFT1; oligosaccharide translocation protein RFT1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69356 lncRNA downstream 475 19998632 ~ 20000625 (-) True mustn1a
TU69340 lncRNA downstream 32640 19968246 ~ 19968460 (-) True G46803
TU69329 lncRNA downstream 44370 19899705 ~ 19956730 (-) False LOC122347177
TU69310 lncRNA downstream 120512 19880238 ~ 19880588 (-) False LOC122347207
XR_006251200.1 lncRNA downstream 120518 19877312 ~ 19880582 (-) False LOC122347207
TU69354 lncRNA upstream 50181 20054866 ~ 20115259 (-) True G46816
TU69358 lncRNA upstream 95961 20100646 ~ 20102453 (-) False srsf3a
TU69397 lncRNA upstream 123263 20127948 ~ 20129839 (-) True G46836
TU69403 lncRNA upstream 144862 20149547 ~ 20152787 (-) True G46838
TU69407 lncRNA upstream 168853 20173538 ~ 20174291 (-) True G46842
XM_043241479.1 mRNA downstream 462 19998809 ~ 20000638 (-) False mustn1a
XM_043241480.1 mRNA downstream 474 19998809 ~ 20000626 (-) False mustn1a
XM_043242891.1 mRNA downstream 6428 19988919 ~ 19994672 (-) True eefsec
XM_043242637.1 mRNA downstream 34676 19965403 ~ 19966424 (-) True LOC122347402
XM_043242356.1 mRNA downstream 36279 19961196 ~ 19964821 (-) True arpc4
XM_043241477.1 mRNA upstream 1369 20006054 ~ 20009354 (-) True sirt4
XM_043241473.1 mRNA upstream 4829 20009514 ~ 20016235 (-) True zgc:172271
XM_043241472.1 mRNA upstream 11861 20016546 ~ 20025871 (-) False sfi1
XM_043241471.1 mRNA upstream 11861 20016546 ~ 20025871 (-) True sfi1
XM_043242935.1 mRNA upstream 46319 20051004 ~ 20056755 (-) False slc2a11a
TU69304 other downstream 153702 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 334594 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 445169 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 445169 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 851370 19115061 ~ 19149730 (-) False vdrb
XR_006251194.1 other upstream 91704 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 156755 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 524494 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2735287 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 2735287 22739972 ~ 22750947 (-) False tardbpb

Expression Profile