RNA id: XM_043241545.1


Basic Information

Item Value
RNA id XM_043241545.1
length 2906
RNA type mRNA
GC content 0.43
exon number 11
gene id nme7
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13607516 ~ 13638945 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTTAAGACTCGTATAGGCAAATTACTGACCCCTTAAACGTCTATTATTCACCTGACTTTAAAATCTGAATTAGCTGAATATTAAAACACCACGCGGTATTGTTACGAGTTCACGGGAGGTGTGGTTTATTGCTGTATTTGTCTGAAGGCCGTTTGATGTTGTTGCTATGGTGATGGGACTGAACAGCGAGGCTAAAGGAAGACAATCAACCGCCTGCTAAACAACAATCAACAAATATCActcattttaaagaattaagACATGGATGAGCGCTTTGCCTTTCTGGCTGAGTGGTACGACCCCAGTGCTGCTCTCCTGCGACGATACCAGCTGCTCTACTACCCTAAAGATGGCTCCGTTGAGATGTTTGATGTGAAGAACCAGCGCACCTTCCTGCGCAGGACCAAGTTTGATGAGCTTCATCCAGAAGATCTGTTTGTTGGCAACCGAGTAAACATCTTTTCCCGTCAACTGAATCTCACAGGTTACGGGGATCAGTACACAGCCAACAAACTCGGCAGCAAGAAGGAGAGGACTTTGGCTATGATTAAGCCGGATGCTGTCACAAAAGTTGGCAAcattattcaaatgatttatgaTGCCAACCTTATAGTCACAAAAGCCAGAATGACCAAACTTACATGGAAGCAGGCAGCGGACTTTTACACGGAACATCAGTCAAAGTCTTTTTTCAATAATTTGGTGCAGTTTGTGAGCTCTGGTCCTATGATTGCTATGGAGCTAATGGGGGATGAGGCGGTGTCAACCTGGAGAAAAGTTCTGGGCCCAACTGATTCTGGCGTGGCACAAAAAGATGCAGCGAATAGTCTCAGAGGCCAGTTTGGTACTGATGGCACTAAGAATGCAGGACATGGGTCAGACTCATTGGCATCTGCTGCACGGGAACTTGAGTTCTTCTTCCCTTCCACTACTGGACACGGTCCCTCCAACACAGCCAAGTACTCAGACTGCACCTGCTGTATCATTAAACCTCATGCCATCTCAGAAGcactGACGGGAAAGATCCTTACGACGATTATAGAAAATGGATTCGAGATATCTGCCCTACAAATGTTCAACATGGATAGAGTAAATGCTGAGGAGTTTTTGGAGGTTTATAAAGGTGTTGTAGCCGAGTACACTAATATGGTGGATGAACTTTGTTCCGGACCTTGCATGGCCCTTGAGATCCATGCTACTGACGCACCCAGAACCTTTCGGGAGTTCTGTGGACCCGCAGACCCTGAAATTGCACGCCACCTTCGGCCCTCCTCTTTACGAGCGCTCTACGGGAAAAACAAAGTGCAGAATGCCGTCCACTGCACGGACCTACCGGAAGATGGGATTCTGGAGGTGAGCTCAAGCAAATCTCATTCAAATGTTACGCAAGAGCCACACAGTCACATTTTGTATTCGGTGTCCTTTTGAGGAAGTTCGTTCGCCTTCGAAATATTTCTGGATCCCACAAATGTTTATGAAACTCAGAACAAAATGGCATCCAGGTCTCATGACTGTCCGCAGTGGGCCGAGGCAGACCCACAGCCCGGATCACAGGAAGGAAAGCAGGCGGGTAGAGTCGGTTTGgtagaagggggaaaaaaaaaagccattgttATGCCAAGGAGTGGGTTTGGCCCGGTGGACGTCATTGTTGTGCACAACTCCTGATCTGTCCGGCCTCCTAGCACAAATGGCCCCTTGTTAATCATTTGCCTGCTGACCGACTCAGCCATGACATTCCAAGAGCTCAGGCCTCACAGAGGCCCAGCACAGACGCCGGCTGCCGTAACAGGCACAATTCAGGGAAAGTCAATTGTTTGAAAGTAAAACAAGCTGGTGAGCTGACGCTGAGGCCTGATGAAGTGCTAAAAGTGCTTCTCAGATTAACAcacaggtttgttttttttaatgtaaggaATTGAAATTTTTGAAACGCTCTCATAAGGCATGTCCCAGTTGACGTACTTCTGCACTGTGGCATTTTTTAGTATAAATAGCGTGAGcagaaaaaacacttaattCGCTTATAATGTTAGTTCACCAcaaaatttgtactttttataaaatttgtactaattactcaccctcgtgtcgttccaaacccatcaAACCCTCATTTGTCTTAAGAACACAAATTACGTTTAGTTTTTTCTCGTTTAGAGCTTTCTTACTCTTCTGAACGTTTTCAGGTCCAAaaaggtagtaaagacatcCTCAAAATGGTCCATGTGTCATCAGTGGTTCatctgtaattttacaaagctacgtAAATACTTCTTGCGCGCACAGAAATCAAAAGTAACAAGTTTATTCAAGCCTTCTTCTCGTTCCTTTATCGAGACCGCAATGTAACAAATGTTATATATGGGCTGAGTCTCGTATAGAGCAGAGGGACGCATGCTGTGTGTCGCGGTGCTCTCAATAATGGCGGAATACggacattttgaaaataattgtcaaataaatttgtttttcttttcttatcgcacaaaaatgattcttgttgctttgtaaaattacagaaGTACTTGTAATACACGATGTccttactatgtttctggatcTGTTTTCTAAGttcaaaataagaaatgatGTTCAATATCATGCGACTGGAGGGAATCACAATGTGAAGCTTTGAAATCGTCCGTTATACACCAGGATTTTGTCTGAAATCTATCAATTTTGACAGACTAGCTCTGACTTTTAAGAACTAGTGTCTATACAAATTACAAATCAAATTCTGTTCGAAACTTTGTGTGGTTTTTTCATCCTTATAAGACATATTGGATGATTAGATAAcagatgtatatatattctgCATGTATAGTGTGCATTTTTGTCTATGTATTGACCTTTTGTCAGTGTTATTATAGAAGCTTGGAATTAATTGTGGCTATTTCTGTG

Function

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K00940 ndk, NME; nucleoside-diphosphate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66532 lncRNA downstream 250092 13356987 ~ 13357521 (-) True G44942
TU66531 lncRNA downstream 252830 13354307 ~ 13354783 (-) True G44941
TU66530 lncRNA downstream 253433 13353915 ~ 13354180 (-) True G44940
TU66529 lncRNA downstream 253963 13353364 ~ 13353650 (-) True G44939
TU66528 lncRNA downstream 254544 13352462 ~ 13353069 (-) True G44938
TU66648 lncRNA upstream 54393 13693338 ~ 13694164 (-) True G45036
TU66652 lncRNA upstream 58554 13697499 ~ 13697711 (-) True G45039
TU66661 lncRNA upstream 79257 13718202 ~ 13722531 (-) False pex5la
XR_006251212.1 lncRNA upstream 184727 13823672 ~ 13835591 (-) False LOC122347350
XR_006251213.1 lncRNA upstream 184727 13823672 ~ 13835591 (-) False LOC122347350
XM_043241276.1 mRNA downstream 22245 13578792 ~ 13585368 (-) True dpt
XM_043242247.1 mRNA downstream 37691 13562045 ~ 13569922 (-) True zbtb11
XM_043242776.1 mRNA downstream 46588 13543207 ~ 13561025 (-) False dipk1ab
XM_043241544.1 mRNA upstream 16315 13655260 ~ 13681294 (-) False tmem131
XM_043241543.1 mRNA upstream 16315 13655260 ~ 13681294 (-) True tmem131
XM_043242700.1 mRNA upstream 52081 13691026 ~ 13692826 (-) True mrpl47
XM_043241824.1 mRNA upstream 83364 13722309 ~ 13785903 (-) False pex5la
XM_043241826.1 mRNA upstream 83364 13722309 ~ 13785901 (-) False pex5la
unassigned_transcript_1263 other downstream 139674 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 140048 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 140387 13467155 ~ 13467226 (-) True trnaa-ugc_114
unassigned_transcript_1260 other downstream 140556 13466986 ~ 13467057 (-) True trnaa-cgc_54
unassigned_transcript_1259 other downstream 140748 13466794 ~ 13466865 (-) True trnaa-cgc_53
TU66636 other upstream 29583 13668528 ~ 13681274 (-) False tmem131
TU66983 other upstream 521530 14160475 ~ 14193166 (-) True G45257
TU67455 other upstream 1690022 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 1964965 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 2420023 16058968 ~ 16059767 (-) True G45730

Expression Profile