RNA id: XM_043241549.1


Basic Information

Item Value
RNA id XM_043241549.1
length 1613
RNA type mRNA
GC content 0.42
exon number 7
gene id zgc:172121
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13638994 ~ 13644273 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGGGTTTGTTATGATGTGGACTTTGACAGTAGTTCGCTTCGTTATCATTCAGGGACTATTAAGCTACACTTTAACATCCTTTCCAGGTTTAGGTTTGGTTTAAAACGTTGCTAATCTTTGAAAGCGTAAGACAAAGGTCTTTTGCTGTGCTTCAAGCGGGATTTATTAGTTAGCTgaagtttaaaatttaaaggTTTTCCACGAACCACAGCAGTCAGAATGGATCCCAGTCCATTCATTTTAGATGGAGGTTTAGCAACAGAGCTTGAAGCAAGTGGATTTCAATTACAGGGTGATCCACTATGGAGTGCAAGAATTTTGCATACAAATCCACAGGCAGTTAAGGACGTACATTACAGATATCTTCAAAGCGGTTCTGATGTTATAACAACAGCCACATATCAGGCCAGCGTCGAGGGATTTGTGAAATATCTCGATCTGCGGCCTGAGGAAGCTCAGCGGACGATAATGTCAGGGGTTCAACTGGCAAAAGAGACGGTCCGCGAGTTCATGTCTCACTCACCCGTATCAGACAGAAGAGAGCCGGTGGTTGCAGGTTCATTGGGTCCATATGGGGCGTTTTTACATGACGGGTCAGAGTACACAGGAGCCTATGAGGACGAGATGACAGTGGAGGAGTTGAAAAACTGGCATCGTCCACAGATCCAGTGCTTAGTAAAAGCAGGCGCTGATCTTGTTGCCATGGAGACCATTCCAGGTCTCAAAGAGGCTGAGGCTTTGGTGGAAGTACTCAAAGAATTTCCAGAAGCTAAAGCCTGGCTTTCCTTTTCTTGTAAGGACATTCATAGTATTGCAAGCGGCAGGAGATTTTCTGAGGCGGTTCAGGTGGCTTGTAGGTCCTCACAACTGGTGGCCATAGGGGTGAACTGTTGTCCCGCTTCTTTAGTGAAACCACTTCTAGAGTCAGCCAAGTCACACAAGAAAGCAGATTTGAGCTGGGTGGTCTATCCTAACAGTGGAGAAGAATGGGACTCCAAAACAGGGTGGAAAGCTAAAAAACAGACGTCATTTGCCAAACTAAGTCTCGACTGGAAAGAACAAGGGGCTTTGTGGATTGGTTGGTATTATTTGTACCAGCAAATAAGCTTGGCTGTAAACTTATACTATGACTTGTTCTTTCCAGTTGCGCTGACTCAGAGAGCTGATTTCTGTCAACAGGTGGCTGCTGCCGTGTTGGTCCAGCTGATATAACTGAGCTGAAACAACATCTACATGTATAGCCGTGACTCACTAAACGCCATGACATCATTTGGTTTATTCTGAAATAATGCAGTGATGTGTAAGAAggtgtataaatattttatttataaataaaaataataccaaCACACTAAATTCACATGAGTATGAGCTTTGTGGTGACTAAAACATTATACATAATATGCGGCTGTGTTAAAAGAAAAACCAATCACAATTCACATGACATGAAAGCGATCATGCAATCTTAGCTCACAGCGTTTCACAAAGGCCGGAATTGTAATCCTTCAAGTTGCTATTTACAATAAGATGGCACCATCTTATTGGACTATGTCACAATCAGATCCATTGAAATATCAAATGGTCACATTATTAAACAGTCTGATGTCTTTA

Function

GO:

id name namespace
GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity molecular_function

KEGG:

id description
K00547 mmuM, BHMT2; homocysteine S-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66580 lncRNA upstream 44393 13589986 ~ 13594601 (+) False LOC122346508
XR_006251135.1 lncRNA upstream 44457 13589885 ~ 13594537 (+) True LOC122346508
TU66481 lncRNA upstream 221154 13417558 ~ 13417840 (+) True G44899
TU66480 lncRNA upstream 222022 13416759 ~ 13416972 (+) True G44898
TU66472 lncRNA upstream 239446 13399022 ~ 13399548 (+) True G44890
TU66598 lncRNA downstream 5842 13650115 ~ 13650883 (+) True G44997
XR_006251162.1 lncRNA downstream 11919 13656192 ~ 13657766 (+) True LOC122346715
TU66600 lncRNA downstream 17539 13661812 ~ 13662097 (+) True G44998
TU66675 lncRNA downstream 192334 13836607 ~ 13836819 (+) True G45056
TU66694 lncRNA downstream 215982 13860255 ~ 13860609 (+) True G45070
XM_043241553.1 mRNA upstream 31480 13598539 ~ 13607514 (+) True atp1b1a
XM_043242778.1 mRNA upstream 96427 13536511 ~ 13542567 (+) True rpl5b
XM_043242547.1 mRNA upstream 167061 13469404 ~ 13471933 (+) True LOC122347353
XM_043242548.1 mRNA upstream 167061 13469404 ~ 13471933 (+) False LOC122347353
XM_043241152.1 mRNA upstream 248343 13367496 ~ 13390651 (+) False tp63
XM_043241552.1 mRNA downstream 8123 13652396 ~ 13655156 (+) True si:ch211-201h21.5
XM_043242699.1 mRNA downstream 40156 13684429 ~ 13690950 (+) True actl6a
XM_043241043.1 mRNA downstream 49104 13693377 ~ 13696789 (+) True ndufb5
XM_043241818.1 mRNA downstream 53519 13697792 ~ 13722434 (+) True usp13
XM_043241819.1 mRNA downstream 53519 13697792 ~ 13722434 (+) False usp13
TU66465 other upstream 229082 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 529628 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 556875 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 858074 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1546539 12087399 ~ 12092455 (+) False G44588
XR_006251224.1 other downstream 327900 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 436660 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 1591938 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1714588 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 1920708 15564981 ~ 15566668 (+) True G45448

Expression Profile