RNA id: XM_043241575.1


Basic Information

Item Value
RNA id XM_043241575.1
length 1948
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC122346727
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18015238 ~ 18024042 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAACCGCACAGATAGTGATTGGCGTAGAAGGGTTTTGTAGCGACTACCCTCctgtttaatgtaaaacatttacagtaagtGAGAGCTATTCACTCTTCTGTGATCTCAAGGACCCGGTAATCTCATCGTCAGTCACATCCGGAGCACGCATGGCTTCACGAAGGCAGAAGGACAGCTCAGACGGCTACCAGCCGCTCTTCAAATCATTCGCTACAGATGCGATCCACGTCGGTTCAGAGCCGGAGCAGTGGAACTCTAGGGCCGTAGTGCCTCCTATTTCACTCTCCACTACCTTTAAACAACACGAACCGGGGAAACACGCGGGTTTTGAGTACAGCAGGAGCGGAAATCCCACAAGAAACTGTCTGGAGAGAGCGGTTGCTGCTTTGGACGGTGCACAACACTGTCTCGCTGTTGCCTCTGGTTTGGCTGCAACTTTGACCATCACGCATCTTTTTAAGGCTGGAGATGGAATTTTGTGCATGAATGATGTTTATGGAGGAACTAACCggtatttcagaaaaatagctGCAGAAGTTGGCTTTGATATCTCTTTTGCCGACCTCACAAAGCTAGAGGAGATAAAAGCAGCTCTGAAACCAAATACAAAGATGGTGTGGATTGAAACGCCCACAAACCCTACAATGAAGGTTGTGGACATCCAGGGCTGTGCTGATATTGTCCATGGGCACAACAAGGATATAATTGTTGTTGTGGACAACACTTTCATGTCAGCCTACTTCCAGCGCCCCCTTGCACTTGGAGCAGACATCTGCATGTACTCTGCAACAAAGTACATGAATGGACACAGTGATGTTGTGATGGGACTGATTTCTCTCAACCGGGATGACATCTATGAACGACTAAAGTTTTTGCAGAATGCTCTTGGGGCTGTGCCTTCTCCATTTGACTGTTATATGTGCAACCGGGGTCTGAAGACGCTCCACGTGAGAATGAAGCAGCACTTCAGGAACGCAATGGCTGCGGCACAGTTTCTGGAGGCCGACCCAAGAGTGGACAGAGTCATCTTCCCAGGTCTTCCATCTCACCCTCAGCACGAGCTGACAAGGAGACAGTGCACGGGCTGTCCTGGGATGATCACTTTCTATATCAAAGGAAAACTGGAGCATGCCTCAACCTTCCTCAGCAGTCTGAAGctGTTTGCACTTGCTGAAAGTCTCGGTGGTTATGAGAGTCTAGCAGAGCACCCagcaATTATGACACATGCTTCAGTGTCTGAGGATGAGAGGAAAGAACTGGGCATCAGTGATACGCTCATTCGTTTGTCTGTGGGCCTGGAGGATGAGGAAGATATTATTGCAGACCTGGACCAAGCCCTTGCTGCTGCACACCCAAAAAAGTAAGAGGCTGATCAAGCTCAATCAAGAACAGTGGTACAACATCTGGACAAGACAAGTCTTCTGTGGCACATTTCTAATACTACTATGACAGTTATGCTTGAAAAACTTGATTTGCATTTGTCAGGGAACAACTATCCTCAAGAAACTCATTTGCCATCTTTTCTTTCAAATTACAGCAGATTTGCTGCTTTTGTGTTTCTACCTTTTTGTAATTATAGTTTGATAAGGTAGTTGGGTTATAAACATGTTCCactatttaaacttttaatacaGGAAAAAGCCAGGACTTCAAGGGAACTCCGATATCatgcaaatgaaaatttttatctttttataagGACTGTGATTCAAGTTAATTCGGCAAGAAGTGCAAGCAGCACAAAAGACACAGTTTACACAACGAATCTTTATTTTCTGCATCAAAGAAGCACAGTTACCTCGTAATGTTTCAAATCACTCTTTATTGATcagtttgtattttaaatactggATATTGGTTGGAGGCTTGAGCATTTTAAACTCTTAGAGGAATCGCATCTGATCTTTGTCTGTGCTACCAGACCCATTAAAAGCCATTTGTAATCTC

Function

GO:

id name namespace
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01758 CTH; cystathionine gamma-lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68093 lncRNA downstream 192503 17822536 ~ 17822735 (-) True G46000
TU68086 lncRNA downstream 207123 17807621 ~ 17808115 (-) True G45993
TU67995 lncRNA downstream 496633 17514638 ~ 17518605 (-) True G45930
TU67974 lncRNA downstream 601099 17413038 ~ 17414139 (-) False brinp3a.2
TU67960 lncRNA downstream 768869 17243680 ~ 17246369 (-) False LOC122347244
XR_006251164.1 lncRNA upstream 16322 18040364 ~ 18044630 (-) False LOC122346731
XR_006251163.1 lncRNA upstream 18605 18042647 ~ 18044630 (-) True LOC122346731
XR_006251165.1 lncRNA upstream 38739 18062781 ~ 18066949 (-) True LOC122346732
TU68243 lncRNA upstream 73026 18097068 ~ 18097490 (-) True G46074
TU68269 lncRNA upstream 93314 18117356 ~ 18117582 (-) True G46092
XM_043242965.1 mRNA downstream 18499 17993970 ~ 17996739 (-) True LOC122347583
XM_043241930.1 mRNA downstream 241132 17743715 ~ 17774106 (-) False opa1
XM_043241577.1 mRNA upstream 4012 18028054 ~ 18040353 (-) True LOC122346729
XM_043241576.1 mRNA upstream 21611 18045653 ~ 18060885 (-) True LOC122346728
XM_043241953.1 mRNA upstream 55592 18079634 ~ 18083673 (-) True nit2
XM_043241951.1 mRNA upstream 64018 18088060 ~ 18090531 (-) True si:dkey-66a8.7
XM_043241166.1 mRNA upstream 67073 18091115 ~ 18096535 (-) True plcxd1
XR_006251188.1 other downstream 241131 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other downstream 241131 17743715 ~ 17774107 (-) True opa1
TU67962 other downstream 706760 17307815 ~ 17308478 (-) True G45910
TU67944 other downstream 827920 17186689 ~ 17187318 (-) True G45895
TU67937 other downstream 1185030 16816640 ~ 16830208 (-) True rgs8
TU68751 other upstream 620264 18644306 ~ 18645134 (-) True G46420
TU68756 other upstream 690132 18714174 ~ 18717488 (-) True G46423
TU68851 other upstream 1031104 19055146 ~ 19056131 (-) True G46478
XR_006251201.1 other upstream 1091019 19115061 ~ 19149730 (-) False vdrb
TU68985 other upstream 1529277 19553319 ~ 19555931 (-) False tsfm

Expression Profile