RNA id: XM_043241576.1


Basic Information

Item Value
RNA id XM_043241576.1
length 2367
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC122346728
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18045653 ~ 18060885 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTGGCGTAGAAAGTTTTAGCTGGAGCAGACCCTCCGGTTTATTAAGAGACTACAGTAAGAGAGAGCTATTCACTCTTCTGTGATCTCAAGGACCCGGTAATCTCATCGTCAGTCACATCCGGAGCACGCATGGCTTCACGAAGGCAGAAGGACAGCTCAGACGGCTACCAGCCGCTCTTCAAATCATTCGCTACAGATGCGATCCACGTCGGTTCAGAGCCGGAGCAGTGGAACTCTAGGGCCGTAGTGCCTCCTATTTCACTCTCCACTACCTTTAAACAACACGAACCGGGGAAACACGCGGGTTTTAACTACAGCAGGTGTGGAAATCCCACAAGAAGCTGTCTGGAGAGAGCGGTTGCTGCTTTGGACGGTGCACAACACTGTTTCGCTGTTGCCTCTGGAACGGCTGCCATTTTGACCATCGCGCATCTTCTTAAGGCTGGAGATGAAATTCTGTGCATGAATGATGTTTATGGAGGAACAAATGAGTATTTCTCAAAAATAGCTGTGGAATTTGGCCTTGGTGTCTCTTTTGCTGATCTCACAAAACTAGAGGAGATAAAAGCAGCTCTGAAACCAAATACAAAGATGTTATGGATTGAAACACCCACAAACCCTACATTGAAGGTGGTGGACATCAAGGCCTGTTCTGATATTGTCCATACGCACAACAAGGATATAATTGTTGTTGTGGACAACACTTTCATGTCGCCCTATTTTCAGCGCCCCCTTGCACTTGGAGCAGATGTCTGCATGTACTCTGCAACAAAGTACATGAATGGACACAGTGATGTTGTGATGGGACTGATTTCTCTCAACCGTGATGATCTCAATGAACGACTGAAGTTTTTGCTGAGTGCTCTTGGGACTGTACCTTCTCCATTTGACTGTTATATGTGCCACCGGGGTCTGAAGACGCTCCACGTGAGAATGAAGCAGCACTTCAGGAACGCAATGGCTGCGGCACAGTTTCTGGAGGCCGACCCAAGAGTGGACAGAGTCATCTTCCCAGGTCTTCCATCTCACCCTCAGCACGAGCTGACAAGGAGACAGTGCTCAGGCTGTCCTGGGATGATCTCTTTCTACATCAAAGGAAAACTGGAGCATGCCTCAACCTTCCTCAGCAGTCTGAAGttGATTACGCTTGCTGATAGTCTCGGTGGTGTTGAGAGTCTAGCAGAGCACCCAGCAAGTATGACTCATGTTACCGTGCCTGAAAATGAGAGGAAAGAACTGGGCATCAGTGATACGCTCATTCGTTTGTCTGTGGGCCTGGAGGATGAGGAAGATATTATTGCAGACCTGGACCAAGCTCTCCGTGCTACGGAAGGTCCCATTGAGCAATAGAGTCTCTTCTTCCAGGCAGTCCTGGTCAAGATCAAAGATTTAGGATTTCTGCAGTAGATGGAATTTATTCTAAGGAAATCATGGCTTCCGTATTATTCTATAACCAAGgtgcataaaaaacaaaacacttttaacaTGCTCTGAATAAACCATAGGAACTCAAACGAATAATAGTAGTTGATCtagtaaatatgtaatttttatagtaatatgaTATGTCTCCGGTAGAAAGAAGTGAATGAAGTAGGAGGTTTGCCTCGCAGTGCCTTTgcaacaattaataaaatataatttttctttttttgatataAGCACCAATAGAGTCATACAAGACACAATTATGACTACGAACTAGCATTTGTTCCAAAAGCAATACACGattcaacttttttttggtaaggATGAATTTGTGTTCATGTATAACACAAGCTTAATCAAATACTGACAAATAAGGTTTTGTACGATTCTCTCTCCGGCTTCATATGGGAGGAAAGCTGACTAATGTGTACATTAAAAAGCCAACTTTGAGGAAAATAAGACGCTATACTGGGTTGGTGAACTTTGGCCCTGAAGAGCTGCggccctgcagagttttgcttcAACCTTAATCAAATACACCTGAACAAACTAATCAAGGTCTGAAGTGTTCCTACAAAGCTACTGGCAGCTGAGCTCTCCAGGACTACAGTTCACCTCCTCTGCTTTATACACAATCCTGGAGGCCCTCCCAACGCTGCATGTTTTCCATGTCTTAATCAAGCACACCTAATTCAGATCAGCTCATCATCCCAGAATACATTAGGTTCTGTCAGTGAAACAATTCAAAGCCATCTAGATTTAAGCCTCTGTAATAGCAGTTTATAAGGCCACACTGTGTAGTCATTTACAAAATAAGTAGTTTCCACAGTTTCacaattttaattgattaaattaatataacaatgtCACCTATTTCTTAATGttctatatgtatgtatttttttttgtctaataaaggctgaatttgattaattaaa

Function

GO:

id name namespace
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01758 CTH; cystathionine gamma-lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251164.1 lncRNA downstream 1023 18040364 ~ 18044630 (-) False LOC122346731
XR_006251163.1 lncRNA downstream 1023 18042647 ~ 18044630 (-) True LOC122346731
TU68093 lncRNA downstream 222918 17822536 ~ 17822735 (-) True G46000
TU68086 lncRNA downstream 237538 17807621 ~ 17808115 (-) True G45993
TU67995 lncRNA downstream 527048 17514638 ~ 17518605 (-) True G45930
XR_006251165.1 lncRNA upstream 1896 18062781 ~ 18066949 (-) True LOC122346732
TU68243 lncRNA upstream 36183 18097068 ~ 18097490 (-) True G46074
TU68269 lncRNA upstream 56471 18117356 ~ 18117582 (-) True G46092
TU68349 lncRNA upstream 189049 18249934 ~ 18250635 (-) True G46140
TU68375 lncRNA upstream 271958 18332843 ~ 18333266 (-) True G46160
XM_043241577.1 mRNA downstream 5300 18028054 ~ 18040353 (-) True LOC122346729
XM_043241575.1 mRNA downstream 21611 18015238 ~ 18024042 (-) True LOC122346727
XM_043242965.1 mRNA downstream 48914 17993970 ~ 17996739 (-) True LOC122347583
XM_043241927.1 mRNA downstream 271547 17743715 ~ 17774106 (-) False opa1
XM_043241953.1 mRNA upstream 18749 18079634 ~ 18083673 (-) True nit2
XM_043241951.1 mRNA upstream 27175 18088060 ~ 18090531 (-) True si:dkey-66a8.7
XM_043241166.1 mRNA upstream 30230 18091115 ~ 18096535 (-) True plcxd1
XM_043242524.1 mRNA upstream 38979 18099864 ~ 18109115 (-) False jade3
XM_043242525.1 mRNA upstream 38979 18099864 ~ 18108841 (-) True jade3
XR_006251188.1 other downstream 271546 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other downstream 271546 17743715 ~ 17774107 (-) True opa1
TU67962 other downstream 737175 17307815 ~ 17308478 (-) True G45910
TU67944 other downstream 858335 17186689 ~ 17187318 (-) True G45895
TU67937 other downstream 1215445 16816640 ~ 16830208 (-) True rgs8
TU68751 other upstream 583421 18644306 ~ 18645134 (-) True G46420
TU68756 other upstream 653289 18714174 ~ 18717488 (-) True G46423
TU68851 other upstream 994261 19055146 ~ 19056131 (-) True G46478
XR_006251201.1 other upstream 1054176 19115061 ~ 19149730 (-) False vdrb
TU68985 other upstream 1492434 19553319 ~ 19555931 (-) False tsfm

Expression Profile