RNA id: XM_043241577.1


Basic Information

Item Value
RNA id XM_043241577.1
length 1914
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC122346729
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18028054 ~ 18040353 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCTTCACGAAGGCAGAAGGACAGCTCAGACGGCTACCAGCCGCTCTTCAAATCATTCGCTACAGATGCGATCCACGTCGGTTCAGAGCCGGAGCAGTGGAACTCTAGGGCCGTAGTGCCTCCTATTTCACTCTCCACTACCTTTAAACAACACGAACCGGGGAAACACGCGGGTTTTAGCTACAGCAGGTGTGGAAATCCCACAAGAAGCTGTCTGGAGAGAGCGGTTGCTGCTTTGGACGGTGCACAACACTGTTTTGCTCTTGCCTCTGGTATGGCTGCAACTTTGACCATCGCGCATCTTCTTAAGGCTGGAGATGAAATTCTGTGCATGAATGATGTTTATGGAGGAACAAATAAGTATTTCTCAAAAATAGCTGTGAAATTTGGCCTTGGTGTCTCTTTTGCTGATCTCACAAAGCTAGAGGAGATAAAAGCAGCTCTGAAACCAAATACAAAGATGTTATGGATTGAAACACCCACAAACCCTACATTGAAGGTGGTGGACATCAAGGCCTGTTCTGATATTGTCCATACGCACAACAAGGATATAATTGTTGTTGTGGACAACACTTTCATGTCGCCCTATTTTCAGCGCCCCCTTGCACTTGGAGCAGACGTCTGCATGTACTCTGCAACAAAGTACATGAATGGACACATTGATGTTGTGATGGGACTGATTTCTCTCAACCGTGATGATCTCAATGAACGACTGAAGTTTTTGCTGAGTGCTCTTGGGAGTGTACCTTCTCCATTTGACTGTTATATGTGCCACCGGGGTCTGAAGACGCTCCACGTGAGAATGAAGCAGCACTTCAGGAACGCAATGGCTGCGGCACAGTTTCTGGAGGCCGACCCAAGAGTGGACAGAGTCATCTTCCCAGGTCTTCCATCTCACCCTCAGCACGAGCTGACAAGGAGACAGTGCTCAGGCTGTCCTGGGATGATCTCTTTCTACATCAAAGGAAAACTGGAGCATGCCTCAACCTTCCTCAGCAGTCTGAAGttGATTACGCTTGCTGATAGTCTCGGTGGTGTTGAGAGTCTAGCAGGGCACCCAGCAATTATGACACATGCTTCATTGTCTGAGGATGAGAGGAAAGAACTGGGCATCAGTGATACGCTCATTCGTTTGTCTGTGGGCCTGGAGGATGAGGAAGATATTATTGCAGACCTGGACCAAGCTCTCCGTGCTACGGAAGGTCCCATTGAGCAATAGAGTCTCTTCTTCCAGGCAGTCCTGGTCAAGATCAAAGATTTAGGATTTCTGCAGTAGATGGAATTTATTCTAAGGAAATCATGGCTTCCGTATTATTCTATAACCAAGgtgcataaaaaacaaaacacttttaacaTGATCTGAATAAACCATAGGAACTCAAACGAATAATAGTAGTTGATCtagtaaatatgtaatttttatagtaatatgaGTCTCCGGTAGAAAGAAGTGAATGAAGTAGGAGGTTTGCCTCGCAGTGCCTTTgcaacaattaataaaatatatatatatattttttgatataaGCACCAATAGAGTCATACAAGACACAATTATGACTACGAACTAGCATTTGTTCCAAAAGCAATACACGattcaacttttttttggtaaggATGAATTTGTGTTCATGTATAACACAAGCTTAATCAAATACTGACAAATAAAGTTTTGTACGATTCTCTCTCCGGCTTCATATGGGAGGAAAGCTGACTAATGTGTACATTAAAAAGCCAACTTTGAGGAAAATAAGACGCTATACTGGGTTGGTGAACTTTGGCCCTGAAGAGCTGCggccctgcagagttttgcttcAACCTTAATCAAATACACCTGAACAAACTAATCAAGGTCTGAAGTGTTCCTACAAAGCTACTGGCAGCTGAGCTCTCCAGGACTACAGTTCACCTC

Function

GO:

id name namespace
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01758 CTH; cystathionine gamma-lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68093 lncRNA downstream 205319 17822536 ~ 17822735 (-) True G46000
TU68086 lncRNA downstream 219939 17807621 ~ 17808115 (-) True G45993
TU67995 lncRNA downstream 509449 17514638 ~ 17518605 (-) True G45930
TU67974 lncRNA downstream 613915 17413038 ~ 17414139 (-) False brinp3a.2
TU67960 lncRNA downstream 781685 17243680 ~ 17246369 (-) False LOC122347244
XR_006251164.1 lncRNA upstream 11 18040364 ~ 18044630 (-) False LOC122346731
XR_006251163.1 lncRNA upstream 2294 18042647 ~ 18044630 (-) True LOC122346731
XR_006251165.1 lncRNA upstream 22428 18062781 ~ 18066949 (-) True LOC122346732
TU68243 lncRNA upstream 56715 18097068 ~ 18097490 (-) True G46074
TU68269 lncRNA upstream 77003 18117356 ~ 18117582 (-) True G46092
XM_043241575.1 mRNA downstream 4012 18015238 ~ 18024042 (-) True LOC122346727
XM_043242965.1 mRNA downstream 31315 17993970 ~ 17996739 (-) True LOC122347583
XM_043241928.1 mRNA downstream 253948 17743715 ~ 17774106 (-) False opa1
XM_043241576.1 mRNA upstream 5300 18045653 ~ 18060885 (-) True LOC122346728
XM_043241953.1 mRNA upstream 39281 18079634 ~ 18083673 (-) True nit2
XM_043241951.1 mRNA upstream 47707 18088060 ~ 18090531 (-) True si:dkey-66a8.7
XM_043241166.1 mRNA upstream 50762 18091115 ~ 18096535 (-) True plcxd1
XM_043242524.1 mRNA upstream 59511 18099864 ~ 18109115 (-) False jade3
XR_006251188.1 other downstream 253947 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other downstream 253947 17743715 ~ 17774107 (-) True opa1
TU67962 other downstream 719576 17307815 ~ 17308478 (-) True G45910
TU67944 other downstream 840736 17186689 ~ 17187318 (-) True G45895
TU67937 other downstream 1197846 16816640 ~ 16830208 (-) True rgs8
TU68751 other upstream 603953 18644306 ~ 18645134 (-) True G46420
TU68756 other upstream 673821 18714174 ~ 18717488 (-) True G46423
TU68851 other upstream 1014793 19055146 ~ 19056131 (-) True G46478
XR_006251201.1 other upstream 1074708 19115061 ~ 19149730 (-) False vdrb
TU68985 other upstream 1512966 19553319 ~ 19555931 (-) False tsfm

Expression Profile