RNA id: XM_043241579.1


Basic Information

Item Value
RNA id XM_043241579.1
length 4948
RNA type mRNA
GC content 0.41
exon number 17
gene id si:dkey-237i9.1
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 9308586 ~ 9352668 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAACTGTTCGGAAAAATACTGAGACGAGAAGGAGGAGCAGATTTTTTCCCTTCACTGCAGCCAGTCAGTGTATTATGGGGCAAATTTAGCAGTGGATCCGTGACTCCGGACTCTAATCGGAAGCACTGCTCGGCTTTGATTCAGAGAGATCATCTTAATCATGGATATTTCAGAACCCGCCAATCCTAACATCTAGAACCTACAGAATTTCTTTTACATTCGAATTATCTGTTTTCAGTTCCTCGCAGTTTGTTTCAgtTCTCGTCACTGTTGTTGGCTTCACCATGGTGCAGAAGTATCAGTCCCCGGTGAGGGTGTACAAACATCCTTTTGAACTGGTCATGGCAGCATATGAGAGGAGGTTTCCTACCTGTCATTTGATCCCCATGTTTGTGGACAGTGATGTGATCAGTGAGGAGACCAGTGAGGATCGATCTCTTCATAGGATTGAGAGGAGATGTAAACTTGACGTGGATGCACCACGACTCCTCAAACGGATTGCAGGTGTGGATTATGTCTACTTCATTCAGAAGAACTCTCTGAACCACAGAGAAAGAACTCTTCATATTGAATCCCACAATGAAACCTTCTCCAACAGAGTCATAATTCATGAACTCTGCTGTTACTCGGTTCACCCAGAAAATGAAGAATGGACATGTTTTGAACAATCTGCCAGTCTGGACATCAAatctttctttggttttgagagcaCAGTGGAGAAGATCGCCATGAAACAGTATGCCAGCAGCATCAAAAAGgGTAAAGAGATTATTGAATACTACCTGAAGGAGCTAGAGGAAGAAGGTATAACTTGTGTACCTCGGTGGAGCCCTTGTCCACCATCACCCACAAAGCCCATGGTTCCAGTTGTTATCCCTGCATTGCCTATCACTCCCACAATCACCATTGAAGCCCCTCCTGAGAGCATGAATGAGATTCAAGTGTGTAAAGAGGGCAGTAGTCCTCCCGGCAGCCTGAACGATGCCCTTGTAACCAGTCCAGACGATAAACTGGATGCAGACTATATCAAACGTTATCTGGGTGACCTCACACCACTTCAGGAGAGCTGTCTGATTCGCCTGCGCCGCTGGTTGCAGGAGACGCACAAGGGCAAGATCCCAAAAGATGAGCATATTCTACGGTTCCTGCGTGCACGGGACTTCAACATAGACAAGGCACGAGAGATCCTTTGTCAGAGCCTGACCTGGAGGAAGCAGCATCAGGTGGACTACCTTCTGGACACCTGGACCTCTCCGCAGGTGTTGCACGATTACTACACTGGAGGCTGGCACCACCATGACAAAGATGGCAGGCCTCTGTATATCCTACGCCTAGGACATATGGATACTAAAGGGCTGGTTCGAGCACTTGGCGAAGAATCCCTGCTCAGACATgtGCTGTCAATCAATGAAGAGGGTCTGAGACGCTGTGAGGAGAACACCAAAGTCTTTGGACGACCAATTAGTTGTTGGACATGTCTTGTCGATCTTGAGGGGCTCAATATGAGGCATCTGTGGCGTCCTGGAGTCAAAGCTTTGCTGAGGATTATTGAGGTGGTAGAGGCAAATTACCCAGAGACCCTGGGCCGTCTACTCATCCTCAGAGCTCCCAGAGTCTTCCCTGTTCTGTGGACGCTGGTAAGCCCTTTCATTGATGAGAACACGAGAAAGAAGTTCCTGATCTATGCTGGAAATGACTACCAGGGCCCTGGCGGTCTTGTGGACTACATTGATAAAGAGATCATCCCTGACTTCCTTGGAGGAGAGTGTATGTGTGAAGTGCCAGAGGGCGGCCTGGTGCCCAAGTCTCTATACAGAACTGCAGAAGAACTGGAGAATGATGAGATCAGACTTTGGACAGAGACTATTTACCAGAGTGCCAGCATCTTCAAAGGAGCACCACATGAGCTACTGATTGAGATCATTGATGCCTCCTCAGTCATCACTTGGGACTTTGATGTATGTAAAGGTGATGTGATCTTCAATATCTATCATTCTAAACGGGCTCCACAGCCACCGAGGAAAGATCCGCTGGCTACCCATGGCATCACCTCTCCTGCAGGCAACAACGTGCAACTTATAGATAAATCTTGGCTGCTGGGACAGGACTACAGCATGGTGGAGTCTCCTCTCACCTGCAAAGAGGGAGAAAGTGTGCAGGGTTCACATGTGACGCGATGGCCAGGATTCTATATTTTGCAATGGAAGTTCCACTCCATGCCAGCATGTGCCACCACAAACCTACCTCGGGTGGATGATGTTCTGGCTACTCTGCAGGTGTCCTCCCACAAATGCAAGGTCATGTACTACACTGAGGTTCTGGGATCAGAGGACTTTAGAACGGCTTGCTGTGATGTGCAGAGTTTGGGCTCAATGACCAGTCTGGAATCCAGTCACAGTGGTTTCTCTCAGCTCAGCGCCGCCACAACATCTTCCAGCCAGTCACAGTCCAGCTCTATGATCTCCAGGTAGAATAGAAATAAATTTAGgctctaaaatgttttaacagttCAGTTTCTCTCAATAAACCATTACTATTCCTCTGTTATTTGTCCCAACACTGTATCACTCCATGTCAAGGACCTGAAGCATGCTCACACAGCTAAAAAGAGTGTAAAATATATCCTTACCTGAAAGGATTCTGGTGgtggtagatttttttttagttgttgttaAAGGGCTTGAATCTGTTTGCCATAGCGCTCACCTGAGCTGCAGGTCAGTTCATAGGCCGATTGTGCTTTGTGTGAGTGTCCAAAGGAACTCACACTTTACCATGCATTTCTATATTTCCCATGGACTGCATGCTGAACTAAGCAATACATGTTCTTCAGATTGAGAAAGAACCTGAAATGTACATGCCCACTTACACATCTCAAATACTGCACATACCTACATATATGCACTTAGTTCTGCCATATCACTAGGAGCTCATCCTCTTGGTGAATTGTTGTTAGGTCAGTGGGAGGGCTTCTGCAATAATTGAGAAGAAATTTGTACTGTTTGAATTTCtgtttatcataaaatatttaaggaGACTGGGATAAGTCTTCTTGGGTGCTACAATCTTGTTTCCTCATTGTTAGTGTGTGGCTAGACTAAAATAGGCAGGTGTTTAGTACCTTTAGTCACAGTACTGCTTCATAGCTTACTTACTAGTGTTAGCTTGAATTTTGGCTTTGTGGAAATGCCTTGATATCGAACCTCAGACTTGCTGCTGATCAGTTCCTATGCAGTCAGCCAATCAGTGCTTGGAATGGTCATTCGTAATAATAGGTCAAAGCATTCTTTAAAGATAGCTTTTCTGGAAGAGAGGCAGTGTACATTTTGTAGTAAGTTTTATTGTTGCTCCAACAGAAttgttaaattagtttttagttttactgaGTTATAtaagaaaagaaacaatgaaaggGGTGGGGTTGGGGGTTAAGCCTCGTGTTGTTTGACAGTTTCTATTAGAAAAAACTTGAAATGGAGTGAGGTTACACAATCTAATGAAATATGCTACTTAAAGACTTTGTTCAGGTTAGAATTTCAatcagaatttaaaacaaaatgctcaATAATTGTCTGGATGATTGCATGTCCATTAATCCAGGTGACTTTAACATGTTTGACACCCTGCACAATAAACTAGTTACCTGCTTAATATCCTGTGAGAATATGTTTGAATCCAGGTGAGGTTTACCTGAGAACAGTGGATGTAGTAACATTTAACTTGCACCAGTTGATTGAATCATGCTGAAGGCTATAATCTAAAAATTCTTGTTAACTTCTTAGCCTTGTTAGTCCTGATCTCATGGACAGGACACTTTAGGGAAAAGGAGATTGTTACACttaacatgtttttgcatttcattcctAGAATGATGATCTTAATATGATTTACAGTGTACCAGTATTCTGGAAGcgtaataacaaaaaaaaactaacaagtgatataaaaaaatgacattttgtcatGAAAACTTTTAGGATTATTTTACAACTGTTATGTTTATAGGTTGATGTTTTTAGTGTGTGGTATGggcataaatacaataaattttttaatgaaatttggGTTTCTATGGAAATCTTATATCAAGCTGCCATCCCTTAAAACGTTTAAGCACCTGTGAAGCACATGTTCTAAATCATGTTTACTTTGAAATGTTCAGAGCTTATGGTTCTAaaatttaacattgtttaacCATGCACAGGTTAGTGGACATGTTTTGTGCTTAGATTTTATTGAAATCTTTAAcaaattgctatttaaataatgcaaaaatcaaCATAAGACCAGTTTGTCAAATGAAACTTTAATGCTTTACTGTAAAGAGAATTCTATAATTCTATACGAGTTGTATTAGTGTGTGATAGTTTTTTTCCACCTTCTTCACTTATCAGCTAAATGAGCCATGTCAGTCATTTCACTTTGTGTATTTTACTCTGTCGGCTAGATGAGACTCATGATATTGCTATATTCAAGCATctatacagtaaatgtataaGGGCCATTAACAAAACCACACTCTAAATTTCTGATGTGTGCACATGCACACTTGTATTCTTCCTTATACACCTGCTTTAACCGATTAGAATTAAGTTAATGTGTGCTTGCGTTTCTGTCTTTTAGAGTTACATCTTTGCAGAATCTCACGTTTTCTATGTAATGATAAATCTCATTATAAAGAAAAGCTAACCTGGAttatttttgaaagtgtttgtggTCTCATCTATGTTTGAGGGCTATTGACTGTTTATGTCCATTGCTTTCTCCCTCTGCTTgtatctttttccttttttttgatcatcttattttgtttgttttttttcttcaatgttacatatctgtttttttctctgacaAAGtatgtatgttaaaaaaatattgaattaatatacaattataGCGCCTTTACAATTTTCAAagttattaaattttaattaaagagaTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65049 lncRNA downstream 26118 9281515 ~ 9282468 (-) True G43916
TU65048 lncRNA downstream 27184 9280931 ~ 9281402 (-) True G43915
TU65036 lncRNA downstream 32514 9275640 ~ 9276072 (-) True G43906
TU65024 lncRNA downstream 44012 9264327 ~ 9264574 (-) True G43894
TU65022 lncRNA downstream 45977 9262403 ~ 9262609 (-) True G43892
TU65157 lncRNA upstream 32441 9385109 ~ 9729660 (-) True G43991
TU65182 lncRNA upstream 227028 9579696 ~ 9915583 (-) True G44010
TU65205 lncRNA upstream 539563 9892231 ~ 9898950 (-) True G44031
TU65186 lncRNA upstream 570557 9923225 ~ 9926256 (-) True G44014
TU65187 lncRNA upstream 574563 9927231 ~ 9928405 (-) True G44015
XM_043242589.1 mRNA downstream 9543 9283403 ~ 9299043 (-) False nol11
XM_043242588.1 mRNA downstream 9543 9283403 ~ 9299043 (-) True nol11
XM_043241779.1 mRNA downstream 312953 8971674 ~ 8995633 (-) True srp68
XM_043241665.1 mRNA downstream 341206 8955256 ~ 8967380 (-) True evpla
XM_043241777.1 mRNA downstream 357413 8933083 ~ 8951173 (-) True acox1
XM_043241673.1 mRNA upstream 233757 9586425 ~ 9710598 (-) True LOC122346819
XM_043241799.1 mRNA upstream 425582 9778250 ~ 9781983 (-) True LOC122346913
XM_043242274.1 mRNA upstream 595134 9947802 ~ 9948988 (-) False anapc11
XM_043242275.1 mRNA upstream 595134 9947802 ~ 9948978 (-) False anapc11
XM_043242276.1 mRNA upstream 595375 9948043 ~ 9948978 (-) False anapc11
TU65030 other downstream 36281 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 37664 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 41262 9266002 ~ 9267324 (-) True G43896
TU65020 other downstream 47341 9260616 ~ 9261245 (-) True G43890
TU64905 other downstream 594728 8712021 ~ 8713858 (-) False G43801
TU65247 other upstream 672910 10025578 ~ 10027635 (-) False c6h17orf67
TU65385 other upstream 788943 10141611 ~ 10145147 (-) False cd7al
TU65678 other upstream 1357377 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 1702367 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 1702367 11055035 ~ 11069457 (-) False brdt

Expression Profile