RNA id: TCONS_00010220


Basic Information

Item Value
RNA id TCONS_00010220
length 3169
RNA type polymorphic_pseudogene
GC content 0.41
exon number 7
gene id XLOC_005327
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20575640 ~ 20584439 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGAGCTCAATGTCGAGACACCACATGAACTCCTGGCAGTGAACAGACCCCAGCACAGCCCTGGAGCTCCAGTAAAGCCCTCACTCAGGAGCAGGTCGCAGGTGAAAATGGCACAGTGGATTTTCCGACTGAGAAGTTGCTTTGGCTCTAAAGTTTATTCCGAGGTCCCAGATGGTGGTTGGggttGGATTGTGGCTGTGGCGTTTTTCCTGGTGGAGGTGTTCACTTATGGGGTTATCAAAAGTTTTGGAATCTTCCTTAAGGACCTAATGAGTGACTTTAATGAAACAAACAGCCGAGTATCATGGATCATTTCAATATGTGTCTTTGTTATGACTTTCACAGCTCCTCTATCAACCGTGCTGAGTAATCGATTTGGCTTCCAGCCTGTTGTGATGTTTGGAGGGTTTCTCATATCTCTGGGCACAATCTCAACAGCATTCACCAGCTCTATCAATCAGATGTACCTTACTATTGGGATTGTGACTGGACTGGGTTATTGTTTGACATTTCTACCAACCGTCACAATCTTGTCCCAGTACTTCAGCAGGCGTCGTTCTGTGGTCACAGCCATGGCATCCACTGGAGAGTCATTTGCTATATTTGCTTTTGCTCCAGCATTCACAGCTCTTAAGAACTACATCGGCTGGAGGTACACATTTGTGGTGATTGGGACGTTACAGGGCATCACTATCATCTGTGGAGCTTTACTTCATCCCATAGTTATCAAACCAACATCTCAGACAGAAACTGAGCAGAAGATCACCTATACCCTCCCTGGAGAACAAGTGCAAGGTTTTGGGAGCTCTGGAGATTCAGTTGTACAGTCGCTTGAGCAAGAACAGGGCCTCAAATCTGGGATTGAACTGGAAGAAGTGGAACCAGTACAGGTTAATCCAAAACAACAGGACAATACAAGTAAAAATAGGCTCTTGGATTTGACAGTGCTAAAAGAAGGCGGTTTTTTGTGTTATTCAGCCTTTGGGCTCTTTGCAACATTGGGCTTTTTTGCGCCACAGCTGTATGTGGTGGAGCTGAGTGCCAGTTTGGGAACTGAGAGGGACAAGGCTGCCTATATGCTGTCAACAATGGCCATCTCAGAGATCTTTGGACGTCTTTCTATCGGATGGGTCATGAATTGTGGATGCATCAGGAAGATCTTTGTTCTTCTCATATGTGTGTCACTGATGTGTCTGGTGCTGGTGTTGTTCACCATAGTAAATGGCTTCTGGGGACTGGTGGTGTGCTGTGTGCTTTATGGCTTCTTACTCGGAAATATCGCTTCCACACACATCCCAATGCTGGCAGAGGATGACGTTGTAGGAATCCAGAGGATGCCCTTAGCTGTTGGTGTCTACGTCTGCATTCAGAGCTTTGCAGGACTGGCTGGTCCACCATTAGGAGGCGTCCTTGTGGATATTACACAAAACTACAGTGCTGCATTCTACTCCTGCGCTGCAGGAATGGGATTAGGTGCCATTTTCCTTGGGCTTGTACGTCCAGCCAAGACAGGTCATCTTTGCAGAAGGAGGAAAAATGGAGAGAATAACTCTGCGGTGGAGCAAGTGTCTAAATCAAGCCAGAGGAATTGCTAGAACAGGGTAACCAAGAAGTTTAGTcttaaaaacacagaacattAGGAACTATCAAACCTGTTGATATAATAGGAACACATTCAAACTGAATGTACTGGAACTTTGGCTACGTTATAATTCATGAGAATTGGGTAAAAGGtttttcacccaaaatgaaaattctgtcatgaaTGACGTAGAAGAACCAATATTGTTCTATTTTTGTTCATCTACGGGTGGTCTTCATTTACCTACATTTATTGTGGTTTAAGTGTGTTTTGATTAATGTTTAAATGCaaagaaaagttttattaaattattgtagtttttattccaaaaataaaccaaaatttgACACGACAGTGTACATAATGACAGAAATGCCATATTTGGGTTAACCATTCTtccattttcatttattcattgtcttgtcggtttagtccctttattaatttggggtcgccacagcggaatgaatcgccaacttatccatcaagtttttacgcagcggatacctttccagctgcaacccatctctgggaaacatccacacacacattcacacacacacttatacactacggacaatttagcctacccaattcacctgtaccgcatgtctttggactgtggggaaaacaggagcacccaaaggaaacccacgcgaacgcagggaaaacatgcaaactccacacagaaacgccaactgagccgagcctcgaaccagcgacccagccaccttcttgctgtgaggcgacaacactacctactgcgccactgcttccccCTCTTCTATTTTTGCATGTGAATTTGTTGCTCATACACTGATTTCATAAATATGACTATTATACAATGACATACAAACCCCATTTGGAATGACTCTAAACACTGCTTCTCTGTTCTAGAAACAGAAGAAATGACCTTCAACAGCAAACCCCATTTTCGTGGTTTTAGAAATTATTGCCAATATCTATGGATGCTTACAGCCACTTATAGCTAAAGCATTGACCAAAGATGTTTAAACTCATTGAAAAACAATCTAAATTGTAAAGAGATGTTATAATTATATAGAGATgttattatatattcattattattattattattactattattattaataataaatagtgaTAAATAGCTCTTTATTGACTCTTTATGAACTAAATGCTAAACCCAGgtaaactacagtattttaaTAATCCTAGCAGTTTGTTTAGGGTGTTGTTTGGTCTTTTCTACAATGATTCTTCAACTGTGGATGAGATTTGCATCTCTGTTATATAGAGAGAATTGTGAATTCAAAACATTACAGAGCACAGATTGATGGAATTGTGCAACAAGGAAGAAAGATGTCCAAAATAATGCAATGGCAAattcaaatgtaaatgtttcttacGAATGATGACTTTCATCATTCACCTCTCTTAGAAAAACTGTATTTCTTTGGTATTTTAATATTGGAAAAGAATTGTATTTGTTGTATCTTCAGTGGAATGTGATGTGAATATGAAATGATCTCTTCTGTTTCTgcacaatataattttttataacaatCTTTGAATCTGACTGAAGAATAAATACACACCTTTTA

Function

GO: NA

KEGG:

id description
ko02000 Transporters

Ensembl:

ensembl_id ENSDART00000171190

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010219 lncRNA downstream 165894 20406586 ~ 20409746 (-) True XLOC_005326
TCONS_00011121 lncRNA downstream 240931 20314995 ~ 20334709 (-) True XLOC_005321
TCONS_00011120 lncRNA downstream 509813 20056971 ~ 20065827 (-) False XLOC_005318
TCONS_00010204 lncRNA downstream 1293631 19278390 ~ 19282009 (-) True XLOC_005315
TCONS_00011119 lncRNA downstream 2121233 18453207 ~ 18454407 (-) True XLOC_005298
TCONS_00011123 lncRNA upstream 1579591 22164030 ~ 22220870 (-) False XLOC_005335
TCONS_00011122 lncRNA upstream 1579591 22164030 ~ 22220870 (-) False XLOC_005335
TCONS_00010240 lncRNA upstream 1579591 22164030 ~ 22220870 (-) True XLOC_005335
TCONS_00011124 lncRNA upstream 1686061 22270500 ~ 22280703 (-) True XLOC_005337
TCONS_00011125 lncRNA upstream 1859201 22443640 ~ 22445101 (-) True XLOC_005340
TCONS_00010218 mRNA downstream 165846 20378376 ~ 20409794 (-) False XLOC_005326
TCONS_00010217 mRNA downstream 202582 20366109 ~ 20373058 (-) True XLOC_005325
TCONS_00010216 mRNA downstream 213579 20355139 ~ 20362061 (-) True XLOC_005324
TCONS_00010215 mRNA downstream 213599 20354691 ~ 20362041 (-) False XLOC_005324
TCONS_00010214 mRNA downstream 225011 20349865 ~ 20350629 (-) True XLOC_005323
TCONS_00010224 mRNA upstream 20752 20605191 ~ 20616160 (-) True XLOC_005328
TCONS_00010225 mRNA upstream 68518 20652957 ~ 20658285 (-) True XLOC_005329
TCONS_00010226 mRNA upstream 77987 20662426 ~ 20665865 (-) False XLOC_005330
TCONS_00010227 mRNA upstream 78197 20662636 ~ 20665164 (-) True XLOC_005330
TCONS_00010228 mRNA upstream 203804 20788243 ~ 20796430 (-) False XLOC_005331
TCONS_00010211 other downstream 386354 20189169 ~ 20189286 (-) True XLOC_005319
TCONS_00010183 other downstream 1837111 18738413 ~ 18738529 (-) True XLOC_005303
TCONS_00010161 other downstream 2868739 17706792 ~ 17706901 (-) True XLOC_005289
TCONS_00010135 other downstream 3577198 16997206 ~ 16998442 (-) True XLOC_005275
TCONS_00010131 other downstream 3673881 16901645 ~ 16901759 (-) True XLOC_005269
TCONS_00010232 other upstream 985344 21569783 ~ 21569899 (-) True XLOC_005332
TCONS_00010235 other upstream 1088510 21672949 ~ 21680620 (-) False XLOC_005333
TCONS_00010242 other upstream 1646707 22231146 ~ 22238004 (-) True XLOC_005336
TCONS_00010246 other upstream 1766193 22350632 ~ 22355405 (-) True XLOC_005338
TCONS_00010257 other upstream 2442437 23026876 ~ 23068605 (-) False XLOC_005347

Expression Profile

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