RNA id: XM_043241582.1


Basic Information

Item Value
RNA id XM_043241582.1
length 5544
RNA type mRNA
GC content 0.42
exon number 16
gene id tgfbr3
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11073175 ~ 11162716 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccactgaaacacacacagacacacagaaagcGGGAGAggtatttaaaactttttgagATCTGTCACAGGCTTTGTCATCCAGAAAACCGCGGCGTTCGTCGCACGATTAATTACCATAGAGACAGACGAGTTTGCTCTGGTCGTTTCTTTAATCGGCCGAAGGAAACGTTACGCCGTGAATCCCTAAGTTTTCTTCAGCATTACTGAAGATTCGCTGAGTCGGTGGGTTACCATTCAAGAAGACACCCTGCTGGTACTCTTTCTGCCGCGCCTGGCTTCGGGAAAGCGCTCTGTTCCAGCCATGTGGCTAACGGCACACATAAGACCCTCCACCATCCTGTTTTTGACCCTCAGCAGCTTGGCCTCTGCAGGTCCATTGTCTCGGAGCCCTTGTGAACTACTGCCAGTTGGAGTGGGTCACCCGGTTCAGGCCATGTTAAAGAGTTTCACCGCCCTATCAGGCTGCGCCAGCCGAGGAACCACCAGCCTTCCTCAGGAGGTGCACATCGTCAACCTACGAAGAGGCAATGCACAAGGAGACAGAGACAAACCAGCCGAGGTGGCGTTACATCTGCGGCCCATCCAGTCCCTGCCTGTGCACCAGAAACCGCTGGTCTTCGTCCTGAACTCCCCTCAGCCCGTCTTCTGGAAGCTTCGGACAGAGAAACTGGCCTCAGGAGTCAAACGCATCTTCCATGTTGCAGAGGGATCTGAAGTGCACTTTGAGAGAGGTAATTTCTCTGAATCGTGTGAGGTGAAGGTGGAAGATCTTCCTCATGGCAATGAGCACCTGCTTTCTTGGGCCCATCAACTATATCGTGCAATTACCTCCTTCAGCGAGCTCAAGATGGCCCATGACATCTACATCAAGGTTGGAGAGGACCCAGTCTTTTCAGAGACATGTAAGATCGATAACAAGTTCCTGTCTCTAAACTACCTGGCAAGCTACATCCAGCCCCAGCCATCCACAGGGTGTGTTCTCTCAGGTCCTGATCATGACCAGGAGGTCCACATCATTGAGCTCCAGGCACCAAACTCCAGCAGTGCGTTCCAGGTGGATGTGATTGTGGATTTAAGGCCGCTGGATGGTGACGCCCCGCTCCATCGTGACGTTGTGTTACTTCTGAAATGTGAGAAGTCAGTGAATTGGGTTATCAAAGCCCACAGCGTAATCGGCAAACTGGACATTGTGACGTCAGATACCGTCAGCCTGAGTGAAGACACAGAAAGGCTGATGCAGGTGTCAAAGACGGTGAAACAGAAGCTGCCCGCAGGATCTCAGGCTCTCATCCAGTGGGCAGAGGAAAATGATTTCCAACCCGTCACTTCCTACACCAACACCCCTGTTGCCAACCACTTCAAATTGCGCCTCAGAGAACAAGATCAAGGGGTCATGGATGAGGGAATGTTTCCGCCGGAGTTGTCAATTCTTCGCAATGCCAACCCACTCCCTAAGCCCAGCGCCCGGGATTTGCCCGCGCGGAATAGGTTCCCTTTCCCATTCCTGCCATCCTCGGACCAGGGCCTGTCATTCCCGTCTCCTCCTCTGGAGGAGCGTGATCATCAGGCTGGGGGTCCCGAGGAGCAGCAGGGGGCTTCAAATGTAGGATTTAGTGTGCAGTGCGAGAAGAACAAAATGGTGGTCAGCATCGACAAGGAAACTCTACAGGCCAATGGGTTTGGAAAACCCAATATCACTCTTCAGGACTCCCAATGCAAAGCAACCTCCAACACCACCCATTACATACTGGAGACGCCCCTGTCAGGCTGCCAAACCACCAAAATTCCCTCCCACCCCAGCCCAGTGGTCCTCTATATCAATTCAATTGTtattagccaatcagaacagaAGGATGGAAGCGGCTGGCCCTTTGAATATGAAGATCTGGAGTCAGGGGATGTCGTAGTCCCGGGAGATCCGGATGTGACGGAAAGAATTTTACCAGAAAACGGACGTCATGCGAGTATCTTGTTTAACTGCACATATCGTAGAAATCAGGACACACCAGCTGACAGTGATATCGGCTCTGAGGATTTCATTGTAGACTCCATTGTGAAAAATGTTACCTTCAACATGGAACTGTATAACAATCCGTTTCACTACCCGAGCTCTCAGTCATTCCTCACCATCACTGAGAACAGGCCCGTCTATGTCGAGATTTCAGCCACAAAAGCCGATCCTAACCTTGGGTTCATGATCCAGAACTGCTTCATATCTCCAGACTCCAATCATGTTACCCTGTCGGACTATATTGTCATAGAGAATATATGTCCTAATGATGACTCCGTGCGCTATTACCCTCAGCGAAGTGATTTCCCCATCCCTCACGCTCAGATGGACAGAAAACGCTTCAGTTTCACCTACAGATCAAAGTTCGATGTATCATTGATCTTCCTGCACTGTGAGATGTCCCTCTGCACCAGAAGATATGAAAAGGAGATGGACCTGCCAGAGTGTATGTTACCAGATGAAGCCTGCTCTTCCCTTAGTTTGGAAAACATCCTCCTCATGATGAGGAACACCAAGACCATCACCAAGCCAATTGTGGTCATCTCCGACAACACACCTGTCACTAGTAATGTACCCATGGAGCCACCTGGTCCACGACATCCAGGCGTTATATATTTCTTGGACACCCCGACTGTGGTGGGCATCGCTTTTGCCGCCTTTGTGATCGGAGCCCTTCTGACTGGAGCTTTATGGTTCATCTACTCGCATACAGGAGGCACCAGACCAAAGCAGCAGGTGGCAAAGTCCCAGCCGGTGTCTGAGAACAGCAGCGCGGCTCACAGCATCGGCAGCACACAGAGCACGCCGTGTTCAAGCAGCAGTAACGCATAGATGCTTCCATCGGCGTTatgctttttacatttctggAAGAATGAGCGTTTTCGTAGCATAACCTGAGGccttattattttcattatttgaaacCGAAAAGTTTAGGCTGAATATCCGACTGGATGAAAAAAAGCTATGTTTAGAGGTGAGGGAAATAACCAAATCAAGATCCCAAGAGCTTTTTTTTCTCGAACCCCACAAGAGAGTGTTGTTTTTGCCTTATATGGCTGTATGGAGATCAGTTTGAAAACAACAAAGGCCGTTTACGCCAGTCATTATGGCATGAAGGAGGTCTAGAAGAACAGTTAGTGCTCTGCAAGGTTCACCCAAACAAAGATCAGTGCCTTGCCAAATCAATCCTATTTTAGAAATCTGACCAGaataatctataataaataGGCCAATATCAATCTAAACTATTCAgtatctgtttttttaaagaacccaAATGCCAATCATTTAATTCTGTGTAACAGTACAGTGTATAGAACTCTTTATTCTCTGACTGGTCTTCGAGATTCAGATGCCATGAGTGATTAGTGTAAAAGCTTTTATCAGAGGCATTGTATAGGAcggaaatattgtaaaataatgtatattctGTGAATATTGTATGAAATGCATAGATTTAAAGTGGAAATAACTTCATAAAAAGCTTTAACTAAAACCAAATATTTATCAGAAGATTGTACACCATTTAGAAgatcattttaatcataaaggcaaatatgaatgaatttaCAGATATACATGCACAAGCGCTTTCCCAGAATTGGTCTTTTAAAAGATAGtcgaaaaaaatatatagagatagTAGATTCTAGCGGTCTAGTAGTTTTTTCCTCCCAAATTCTGATGTACAGATAATCAcagattattataataataagcgTTTTATGACTCAAAACGGACTTTTAGATTTTATAGAATGTGATTTATAAATGCTGGGCATTATTATTCAACATTAGTATAAAAGAGTAATGATTTCAGTAAACGGCAGACtgtaattttgatattttttcgttaaatttaaaaatcaaaatgagCATTTGTTGAGAAGGATTTGATGTGCATAGTCACAAAAGATGTACATAATCTGATGCCAAAGAATGGGCATTTACTTCCCGGTCTTTTAGCGTTGCAGCAACCCCTGCAGTGTGTACGTTTAGGTGCAAACCTACCACTAAAGTGAACGCAAAACCAACTTTTCTCTAAAAATCGATCATTTCTGCTGTGTATGTGAAGTTAACAATTTGGGATTTTGTGTAGATCATGCATACAGATATACTTGTGAAGTGCAAGAAATGTATGAATGCAAAGCCAGAGCAATCCCACCGTCAAAACTTTACATGAATGTCATAACATTATAAGTGCCTTACCTTTGAGTGCATGCATTATTAGATCAAATGAGGCAAGAAGGGAAGTGGTGTTTGCTTTGCTTTAAGCACAGTATATACCCACCGATGTGAAAACCTGCCAAATCTGCGCATCTAGGAGTTTTAGTATctattgttgctttttttgtttgtgcgtTGCTGTACCTATAGAATGTACTTTATTTCAAACCTTCATTGTAAACTTGTATAAATGTCTCCTGtaagaggaaagagagaaagaatttaaactttaatttgtgtataaagttatatttttctagagatatatatatatgcatagaGCCACCCTATAATTCTATCTGCATACTGTGAATTTTTGTGGgcatatttctataaaatgtcACGTGTTTTCTCTAAATCAAAACATAGTCCATAATGCTGAAGTGAGCTGCATTCCCTGCAAATCACATATATTTTCCTgatataatcatataaaataatagatatatatatatatatatagatatatattttttacaacatttcaTCTTTTATATGAGAACACTATAATATTTGgaatataaaaaatctattttgatgTTGCAGATGTTTTTATCTCTCTTGTAAGCTCTTCAACATTTAAGTATCTGTTAAGTGTGTGTTCGATCACACCGTAAGCTCTGTGTATCCATGTTTGTGGGTTTAAATGGATGAGTATGCTCCTAGTCCTCGTCTTGTGTCTTTTGGGAATGTTTAAAACGATGCTGTCACGTCTAACAGAGTTTGAATCTCTGCTAGATTTAATCAAGAGTCATTTAATGGCTGTAGAGTTAAAGAAGGCcttattggttttatttatcaaaagaCCTTTTTCTCATTCCAGTAAACGCTCTGTTTCATGGTAAACTctctatttgaaaatgtaagtgGTTTTCCTGTCTGTCGAGTGATGAAATTGATTGTGCTGTGTTTGTTCGTTATCTACCTCATTTGCGTGTCTATGTGTGTATAAGGTTTCATTGTCTTGTCATCGagtatattttactgtacataCTGTGTAGAGCTTGatgttgcataaaatatatcaaaggTTTTATCTTAAAGTTTTGACAGTTCACTCTGTATCGGTCTCTAGACTTTCCGACATAAGAGGAAAATCTGAAAGATGTAAAAGTGAACCTTTCAGAATTAGACTTCAGATTATTCAGACCGTCTTGCTCTGAAACTATACACTATTGTGAcaatttctgtgttttgttcctCCAATGGTATGTGAAACCGTTTagtgtatgtaaataaaatgtgctgtaAATATGCATGCTATATGTATGCTCTGTATATACCAAATAAATTCTTGTAATCTTT

Function

GO: NA

KEGG:

id description
K05843 TGFBR3; transforming growth factor, beta receptor III

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65601 lncRNA upstream 71820 11000691 ~ 11001355 (+) True G44301
TU65597 lncRNA upstream 75659 10996408 ~ 10997516 (+) True G44298
TU65596 lncRNA upstream 81573 10991370 ~ 10991602 (+) True G44297
TU65550 lncRNA upstream 180995 10889379 ~ 10892180 (+) False pik3r6a
XR_006251182.1 lncRNA upstream 409486 10662120 ~ 10663689 (+) True LOC122346901
TU65779 lncRNA downstream 53331 11216047 ~ 11216274 (+) True G44440
TU65782 lncRNA downstream 58913 11221629 ~ 11222047 (+) True G44443
TU65792 lncRNA downstream 75499 11238215 ~ 11238423 (+) True G44453
TU65794 lncRNA downstream 78404 11241120 ~ 11241687 (+) True G44455
TU65795 lncRNA downstream 79078 11241794 ~ 11242025 (+) True G44456
XM_043241054.1 mRNA upstream 126911 10943752 ~ 10946264 (+) True gadd45ab
XM_043241053.1 mRNA upstream 142742 10922668 ~ 10930433 (+) True znf648
XM_043242363.1 mRNA upstream 169150 10901006 ~ 10904025 (+) True glulb
XM_043242125.1 mRNA upstream 180715 10882960 ~ 10892460 (+) True pik3r6a
XM_043242126.1 mRNA upstream 190276 10870378 ~ 10882899 (+) True LOC122347096
XM_043242072.1 mRNA downstream 17112 11179828 ~ 11200924 (+) True znf644b
XM_043242069.1 mRNA downstream 17112 11179828 ~ 11200924 (+) False znf644b
XM_043242073.1 mRNA downstream 17112 11179828 ~ 11200924 (+) False znf644b
XM_043242070.1 mRNA downstream 17112 11179828 ~ 11200924 (+) False znf644b
XM_043242071.1 mRNA downstream 17112 11179828 ~ 11200924 (+) False znf644b
TU65546 other upstream 199597 10870409 ~ 10873578 (+) False LOC122347096
TU65338 other upstream 949741 10122753 ~ 10123434 (+) False atad5b
XR_006251197.1 other upstream 1148277 9916051 ~ 9924898 (+) False pecam1b
TU65822 other downstream 252557 11415273 ~ 11420330 (+) True G44478
TU65824 other downstream 252557 11415273 ~ 11420330 (+) False G44478
unassigned_transcript_1089 other downstream 810255 11972971 ~ 11973044 (+) True trnai-aau_2
XR_006251144.1 other downstream 839432 12002148 ~ 12010109 (+) False LOC122346564
TU65993 other downstream 924683 12087399 ~ 12092455 (+) False G44588

Expression Profile