RNA id: XM_043241602.1


Basic Information

Item Value
RNA id XM_043241602.1
length 4232
RNA type mRNA
GC content 0.51
exon number 21
gene id sap130a
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13024547 ~ 13038280 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggttgatgcAGCGTTCACACTATGGAGTGAGAATagcttcagagagagagagagggatacACACGATAACAGACACAAGATGAGTTCCCAGCAGTTTCCCAGAGCTGCACTGCCTCCTTCTGGAGCTGGACCGGGTCAGGCGTCTACTGACAGCAGCACACAACCAGTAGGCAGTGAGGACAGCAGCCGTGAAGTGGATCGCTCTCAGGATCCTCCGCCTGGCAGCGGCAGTGCGGGTGGAATTGCATCGTTCCGTGACGATAAGCAGGAGACGGTGGTGGTCAGGCCCTACCCACAGGTCCAAGCTCTAGGCCAGTCTCCTGCTCTGCCCCAGCATGTGCCTATCCAGCCCAGCCCTCCTGTAACTGTGGCCGCCCCATCAGTCCAACTGTTACAGGGTCAGCAGTCCAGTGTCGAGGGATCAGTGAAGGCCCCGCTGAAGTCACCTATGCCCAGTCGTCTTATAGCACCTGCTCCGGCCGTCAGCCAAGGTCATATACCTGTTCCAGCCAAAGTGTCTGGACATATCACAGTTCCTCTTGAGAGCAGCATCGCTCCGGCCTCTATACCAGTGGCAACCATCAGCGGTCAGCAGGGGCAGAGTAACCTGCATCAGCTAATGGCCACTAACGTGCAGATCTTCAGGGGTAGTGCACCTGCTCTACAGATCGCATCTCCTGCTTCTCCCCACACTTTCACCTCCCATCTGCCCAGAGGGGCAGCTGCTGCAGCTGTCATGTCCAGCACTAAAGGCCCTACTGTTCTCAGACCAGCCGGAGGAGGAAACACAGGCCCTAGCCAACCTGCAGCTGTGCAGCACATTATACATCAGCCTATTCAGTCTCGACCTTTAGTAACCACCTCGACTGCTGTTCTGCCCACTATGGTGGCTCCCATCCCAGCTGCTAGAACCCAGTCCCCAGTCATCAACACCCCTGTCACACATGCTGCAGAGATGGTTCATGGgaGACCGGTAACCATTCACCCTCCACCAACCACCATCAACATCCAGCGTCCCCCTACTCCCCGGGACACTGCCACGCGCATCACCCTTCCCTCCCACCCAGCTATTGGAGCCCAGAAGGCCCAGCCACCTCACACCGTGACACAGaAACCGATATTCAACACTGTGACCCCGGTTGCCGCTGCCACTGTGGCTCCTATCTTAGCTACCAACACTGCTTCATCAGCCACCACTACAGGCTCTTCACCACATACTCAATTGACCAGTAGCACTATTGTCACCATGACAATGGCCTCTCACTCCTCCCATGCTACAGCTGTAACCACCTCTGCCATCCCTGTCGCTAAAGTGGTTCCTCAACCGATTGCCCACACTTCCCCACGCATCCAGCCAGAGTACCCAGGGGAAAGAACCAACCTCATTCCCATCCCAGGTCATCGATCTTCTCCAAACCCTGTCACCATGGAAGCACGCAGCGATAACAGGCCGTCAGTGCCAATGCAGTTTCAGTACTTCGTACCCACATACCCCTCATCCCCGTATCCTCTGACCCACACCTACACCCCGATTACCAGCTCGGTCTCCACCATCCGCCCTTACCCAGTCACGGCTCCAGCTCAGAGCTCGGCTCTTCCTGCTCAGGCAGGTGTTGGTGTTGCCACCACTGTGCACTTGAACCCCATGCAGCTTATGGCAGTGGATCGCATCGGACTTCAGTCTGCCCAGATCAGCACTCAGAACATCCAGCCAGCCTCTATGACTGCTCAGGGCATTCAGCCTGCACCAATAGGAGTTCAGGGGCTGCACGCCACTGCACCAATCAGCACACAGAGCGTACAGCAGACTCCAGTCGCCACACAACAGCCGCAGTCAGAAGCAAAACCACCAGGTGTCGTTTTGGCTGAAAGTCCTGCTTTTGTCACTAATCCAATCGGGAGCACTTTTAGCGGCACGCAGCCTGTCACTACGATGGTGCAGACACACCCCCAAGGGGCGTCTACAGGTGCACCCACGCTCGTGTCCTCCCCCCGGCCTAGCATCCTTCGCAAAAAACCTGTGAACGAGGGGGCAGTGCGTAAAAGTCTGATCCCAGCGCAGCCAAGTGAGCATAACGCTGGCCGAGTGGATAGTGGGATAAGGCTCTCGGGATCCCCTCGCCCAGCGGGAGTGAAGCCCAAATCTGATGTTCATGTTGCAATGGCGCCCCCAGTCATGGCAGCCGTGGAGGCTCTTCCAAGTCACGGAGGTGAGCAGCAGGCGCTGTCCACTCCTGCCCAGCATCACTCACAGGCCATTCCCACCCTTCTGGCTTCACCAGCTCCAACACCTCCCTCTCAGCCCACTGCCGTTCTTTCAGCCCTGCCTGCAGCCATGGCTGTGACTCCCCCTGTGCCAGCCTCCATGGCCAATGCCGTGGCTTCTCCCACCCAGCCAGCGGCCACCAGCACTGCTGCCCTGAGCTCCACCCTTCCGGAGGTTAAGGTGAAACAGGAAACTGAGCCAATGGACACTTCACAAGCAGtgcccATGGTTCCTTCCTCAGCAGGTCCAGCTCCACCCCTCTCCTCCCAGGCCTCCACCCTGGCCATATCTTCTCAACCTGGAGACCTCCTGCCTGGGGCCTCTCCTAGAAAGAAACCCCGCAAACAGCAGCATGTGATCTCCACCGAAGAGACGGAGATGGTGGAAACCAACAGCACCGATGAAGAGAGAGCTAGCAGTCGAGCCCCTGGAAACAGACCTGAAAGACACGAGTCTCCACCTAGGGAATATGTTGACGAGGACGGTGTTCGTTATGTACCAGTCCGCCCCAGACCTCCCCTTACTCTACTGCGTCAGTACCGTAACCCCTGGAAGGCTGCCTATCACCACTTCCAGAGGTACAGTGACATCCGAGTCAAAGAGGAGAAGAAAGGAAGCCTTCAGGACATGGCCAATCAGAGAGGAGTAGCATGTCGAGCTCAGGGCTGGAAAGTGCACCTGTGTGCTGCACAGCTGCTACAGCTGACTAACTTGGAACATGACGTGTACAGCCGGCTGACCACCCTGCAGGAAGGCCTCATTCCAAAGAAGAGAGCTGGAGCTGACGATGACCTGCACCGCATCAATGAGCTCATACAGGGCAACATGCAGCGCTGCAAGCTGGTGATGGATCAGGTGGCTGAAGCTCGCGACACCATGATGAAAGTACTGGACCATAAGGACAGAGTCTTGAAGCTGCTCAACAAGAACGGAACTCCCAAGAAGAGCTCCAAATTAAAGCGTAAGGAGCGGGCATAGATCGAACACAGGAATGCTCTTCAAAAGCTGGACCTGTCATGGTTTATCAGGTTGCTGTGCACAATCATCTACTTTTACAGtctcaaagagagagaaagacggtCATAAACTCTTTTTACAGGAACTGCTGCTGACTGTGGACTGTCAGACTGTCCATTGGGTATGAGGCAGCCTGGTTAAccaatgctttttgttttttcccctgaagtatttcattttagaagaaacatcttgttttttttagttgtatAGGCGATGCTTTTTCTGAAATGAACTTTAAAGATCAGAAAGGTCATATTTGCTAAATGTAACTTTTGTATTTAGTTTGAATCACATCAAGTACACACTGCACACATTCTAACCGGAGTGTGCTAGCTTTCCATGTTTTGGTGCCTTGTAACATGGGTGAAACtgtggattttctttttttcttttttttttttttttttttgtgcatttaaatacaaaaggtTAAAGTTAATCGTTTCCAGGTTAACCAGAAAGTCTACAGTGAAAATATAATAGTCTTGTACTAACCAGATATGATGCCCTCTAACCCTTctagttttctttttgtcatcACTGTAAACATTCAAGCGCTATAGTGACTGATGATAGTACAAAGCAATGAAATGTGTACTTGAAAGAATCAGTATAATTATGTGAATTTATATGATAAGAATGAgtgtattgttttgtgtttcagtgtaAGAATGTTCTTAATGGAAGTGACGTGGTTTTCACAGTctgtttttgtgctgttttacaGATATAATGTTCTGGGGTTTGAATAATAATTTggctgttttgtaaaaaaatttttttttacccatttatttttctgtgtgtacTCTATTATGTACTACTGCAGTAAAACTGGATACATTTACGAAGAATCTTTAGTAAGTACATTTGGTACTAAATGCACTTCACAAGactttgcaaataaaaaaacgtcAAGTTAGATTTTAGACTTTGAATATAGTCA

Function

GO: NA

KEGG:

id description
K19192 SAP130; histone deacetylase complex subunit SAP130

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66087 lncRNA upstream 236376 12786119 ~ 12788171 (+) False crocc2
TU66075 lncRNA upstream 324970 12664820 ~ 12699577 (+) True G44622
TU66062 lncRNA upstream 352882 12564092 ~ 12671665 (+) True G44611
TU66058 lncRNA upstream 497657 12521773 ~ 12526890 (+) True LOC122347491
TU66052 lncRNA upstream 530905 12492953 ~ 12493642 (+) True G44606
TU66066 lncRNA downstream 45100 13083380 ~ 13084230 (+) True G44615
TU66120 lncRNA downstream 55576 13093856 ~ 13095910 (+) True G44640
XR_006251172.1 lncRNA downstream 62999 13101279 ~ 13103566 (+) True LOC122346816
XR_006251171.1 lncRNA downstream 63992 13102272 ~ 13103566 (+) False LOC122346816
TU66449 lncRNA downstream 275273 13313553 ~ 13313854 (+) True G44872
XM_043242116.1 mRNA upstream 10146 13004991 ~ 13014401 (+) True amotl2a
XM_043242294.1 mRNA upstream 43018 12972171 ~ 12981529 (+) True cep63
XM_043241601.1 mRNA downstream 1243 13039523 ~ 13058121 (+) True LOC122346752
XM_043241608.1 mRNA downstream 20579 13058859 ~ 13064429 (+) True gpr17
XM_043241607.1 mRNA downstream 22266 13060546 ~ 13064429 (+) False gpr17
XM_043241810.1 mRNA downstream 27558 13065838 ~ 13080046 (+) True inpp5d
XM_043241811.1 mRNA downstream 42285 13080565 ~ 13082119 (+) True smx5
TU66085 other upstream 243627 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 932092 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 1014438 12002148 ~ 12010109 (+) False LOC122346564
unassigned_transcript_1089 other upstream 1051503 11972971 ~ 11973044 (+) True trnai-aau_2
TU65824 other upstream 1604217 11415273 ~ 11420330 (+) False G44478
TU66063 other downstream 42330 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 70455 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 355949 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 933893 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 1042653 14080933 ~ 14081004 (+) True trnag-ucc_2

Expression Profile