RNA id: XM_043241667.1


Basic Information

Item Value
RNA id XM_043241667.1
length 4064
RNA type mRNA
GC content 0.46
exon number 10
gene id bcl6aa
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13086100 ~ 13109224 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caAACGCATCCAACCAGGGACAGCTCCGGCTTGCCGGGATATTCTGGGGGCCGCAGACTGCCTGTAAGACGGAAGAGACGGCGGGAATCAGCACCTACTCAGCTTTCCCCAATCCAACCAGGCATCTTCAACATCTGCCAGCATGCACGCTCATCTCTGAGCCCCTCCGCCGCGCGCCAGCTTTTCTGCCAATCCCAGCTCTGCTGCCACCGATCCTCGTGTTCCTCCGTAGAGCTGTCACAGTCTGCTCCGCTTTCTTCCCTCTCGTTGAACTCCGGATGTCCTCCGCTTCCCCCCAAGGCATCGCCGGCATTTGAGTTCTGTAACTGTTAAAAACAGACTTCTGCCTCCCGTTGGCAACTTTTGGACCGTCCAGGGGTGTCCCATTTCCTGCTCCAGAGTTTGAGACGTGGTGAAACTGGGGGTTCCTCGCGAGCGCTGAGCAATCCCTCATCTCCCAGCATGCCCCATTCCATGCAGCAGAAACACGCCCAACAGATGCTCCTTCTGTGTCAGGGTATAAACGGCTCAAGGGAGGACGGACCAGTTCCCCTCAACTGGAGCCACAAACGAAGTTACCCAGATCTCGAAAAAATGGCTTGTGCAGCCGACAGCTGCATCCAATTCACGCGTCATGCGAGTGATGTTCTGCTCAACCTGAACCGACTGCGCAGCAGAGATATCCTTACAGATGTCACGATTCTGGTCAACAGACAACAGTTTCGAGCACACAAAACAGTCCTCATGGCATGCAGTGGGCTCTTCTACTCAATCTTTACTGATTCACACAAATGTAACCTGAACGCCATCAGTCTGGACCCGAAGGTGGACCCAGAGGGTTTCGCAATCCTTCTGGAGTTCATGTACACTTCACGTCTCACACTGAAGGAGAGCCTCATCATGGCCATCATGAACACAGCTATCTATTTACAGATGGACCATGTTGTTGACACCTGCCACAGATTCATAAAGTCCAGTGACTCTTCTATCAAACTTCCCAGAGAGGACTTTCTGGTCAGCCCCCTGCTTTTACCTCAAGACGTGCACAGTTACAGACCCCACGAGGTGCTGGAAAACGTTCCTGGACGGGGAGCGACTTTCAGAGACGGGAGACCCTATGGTGTCTGCATGTTTAATGGGGTCAACGGTCCTAACAGCTCGTACCTTTACAGCCAGTTTCCCATGCAAGGTTTTCCCTTTCCTCTCTGCAAGCTGACAGATACCAAAAACACTTTCTCAGACTTCTCAAAGGGAGGCATCATCCATCACAAACACTGCTCGCCGGCTGATGGCAACAACCCCGTGCTGGCCGATTTCACCCGCAGCGCTACCGGCGGGAGCTCAAATGCTTGCCATGCCAGTTCATACTCCTCGAGAGAGCTGGGAAGGGATGAGGAAATGAAGCGGGAGACCTTGGAAGGAGTGGTCCATTCGATTGGGATGAGCTCCAGAAAGCACGGCTTCACAAGCTTGGGCCAGGAGCAGCAGCAGAGGGAGACTGGGAAAGAGCAAAGTTCCCTGGCAGAGGAGCATTTGAGCCACCAACACTATTCCATGGGCATATCCTCTAATGGACGCAAAACCTTGATGAGCAGTCCTCAGAGCCCCCTCAAATCAGACTGCCAGCCCAATTCCCCAACGGAATCAAGCAGCAGCAAAAATGCTGCCCTCACACAGTCTTCACAACCTCCAACCTCTCAAGGTACTCAAGACCCTAAAGCTCGTAACTGGAAAAAGTACAAATTCATTGTTCTCAATCAGAGCTCCAAGGAGGAGGAGACCAGTCCTCGTGACCCTGGAATGCACTCGCCACAGAGGCCGGGCTTGTCTGCTTTTCTTCACCATGTTGGTTCTGAACATCCCGACTCGAAGGCGACAACAAAGATCAGCGAACAAGGCGAGGACTTCACCGTGCCTCAGGCCAGTCGCCTCAACAACATCATCAACAGCAGAACTCTAGAGGGATCACAGAGGAACAGCGACAGCCACTCTTCCCTCTATATGAGCCATTTAAAGTGCTCGTCCTGTGGCTCCCAGTCTCCACAGCACTCTGACGTCTGTCCCAACACGTCCGCCTCTCGTCTGGCCGAGGAGATGTCTGAGATGCACTCGGAGTACTCCGATTCCAGCTGTGAAAATGGAACATACTTCTGTAATGAATGCGACTCCAAGTTTGCAGAGGAGGAAGCCTTGAAACGCCACACGCTTCAGGTCCACAGCGACAAGCCATACAAATGTGACCGTTGCCAAGCAGCATTCCGCTACAAGGGAAACCTTGCCAGTCACAAAACAGTTCACACCGGAGAGAAACCGTATAGATGCAATATCTGCGGGGCTCAGTTCAACAGACCAGCTAACCTCAAAACCCACACACGAATTCACTCAGGAGAAAAGCCATACAAGTGCGAGACATGCGGCGCTAGATTTGTGCAGGTTGCTCACCTTCGGGCTCACGTTCTGATTCATACCGGAGAGAAGCCATATCCTTGCGAGATCTGTGGCACTCGTTTCCGTCATCTGCAGACGCTGAAAAGTCACCTGCGAATACACACGGGAGAAAAGCCCTATCATTGTGAGAAATGCAACTTGCATTTTCGCCACAAGAGTCAGCTGCGGTTACACCTGCGGCAGAAGCACGGCGCAATCACCAACACCAAGATCCAGTATCGCATGTCCTCGACAGACCTACCGACCGACTTAACGAAGGCGTGCTGAGAAGGCACTTAGGGGCAGACCTGACCATGGCATTATATGACCTGACTTGTACAATCATTCAAAATTTTAGTGCCACACTGTGTTAATcggacaagaaaaaaaaaaacgacactGGCAGGAAATGCCAGTCTAAACGGGTTTCCTCTACATTTGAACATAGAACCACAATATGGTCTCTTGTAGTcactttattgtttatatttacatatttacatatatatatatatatatatataaatatatattaatgttggAAGTGTTTTTACGTTTTGAGTTActaaaaaagctttattttgttcGAAGAAGGATggaatgtaaaacatttaaatccggtttttgaaaatacagtattttctaacgagaaaaaaaacttttctgaaGGTATTGGGGGTTTTGATTTGAGGTTGGAATATTTTAAGTCAAACACATTTCTCGCAAAGCAAAGAATTGTGTGTCTATAGATTTGTGTgtctatagatatatataaaaatgtacaggtTACACTATGTTGGAACGACCTCTGTCTTGCAAGAGGAACTCCTAACTGTGACTATAGCATTGAATATCTTACTTGGTTTTTGTCGTGTACTTTTGAGAATAATGGCTGCTCTCTCAAATGGAAAACATGCATGAGGTGGGTTGCCACTGATAAACTATCACTATGTAGGCAACTGCATAAATATCGTGACATAAAGTGTAATTACTTTACATCAAGATTGCTCTCTGCTGGCAGAGCCGATCTGGAATTACATGGTAACATATGCATTCAAAAgtaataatgattataataataataataattaaaaaaaaaaggtactgcTATGTTATGACCAAGGAGATATTTTGCTTCAGATGTATTTGTATAGAAACgtgactttttatttcttttggcaAGTGAAGGTTTACAGTTTTGTCGTTGTTCTAGAAGCTACGTAAAAGGTTATACtattgtctttcttttcttttctttttttgtctgtgtataCACTGTGTACTCAAGGTGCCTTTCTCAACGGTGTCTGAATTTCTTTTCATTCAGCCCAGCTCTACTAAGGTACAACTGAAGGGCAACACGtgtcctttttttccctttttgagTGTGTAAACATGTGagaatgtttttgtgacagAAGGACGGCGcgactgagtgtgtgtgcatgtgtgctttataaatgcttttcacacactttaagaaaaaaaaaaaaaaatgcaaatcattGCGTGAGCTATACATCTTCAGGACTTGTTTTGGGATCGggcttttttaaataataaaaaaaatgcattaagcttactgtaaaatatagatgtatgaatgtaaaataaaagtattggaTTTCTATGTCTAA

Function

GO:

id name namespace
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66360 lncRNA downstream 59891 13025107 ~ 13026209 (-) True G44798
TU66349 lncRNA downstream 96793 12989105 ~ 12989307 (-) True G44787
TU66346 lncRNA downstream 100965 12984812 ~ 12985135 (-) True G44784
TU66281 lncRNA downstream 120587 12963383 ~ 12965513 (-) True G44737
TU66284 lncRNA downstream 120587 12963383 ~ 12965513 (-) False G44737
TU66420 lncRNA upstream 104818 13214042 ~ 13243275 (-) False LOC122346940
XR_006251183.1 lncRNA upstream 104833 13214057 ~ 13243671 (-) True LOC122346940
TU66434 lncRNA upstream 170459 13279683 ~ 13279882 (-) True G44863
TU66512 lncRNA upstream 226661 13335885 ~ 13336625 (-) True G44924
TU66513 lncRNA upstream 228744 13337968 ~ 13338425 (-) True G44925
XM_043242303.1 mRNA downstream 115472 12967100 ~ 12970628 (-) False im:7152348
XM_043242304.1 mRNA downstream 115472 12967100 ~ 12970628 (-) True im:7152348
XM_043243024.1 mRNA downstream 386553 12630812 ~ 12699547 (-) False LOC122347614
XM_043241195.1 mRNA downstream 821387 12262919 ~ 12264713 (-) True LOC122346505
XM_043241350.1 mRNA downstream 991360 12088224 ~ 12094740 (-) True zgc:103559
XM_043241142.1 mRNA upstream 281479 13390703 ~ 13407082 (-) False tbc1d23
XM_043241140.1 mRNA upstream 281479 13390703 ~ 13407082 (-) False tbc1d23
XM_043241141.1 mRNA upstream 281479 13390703 ~ 13405896 (-) False tbc1d23
XM_043241138.1 mRNA upstream 281479 13390703 ~ 13405896 (-) False tbc1d23
XM_043241139.1 mRNA upstream 281479 13390703 ~ 13405871 (-) False tbc1d23
unassigned_transcript_1091 other downstream 114551 12971478 ~ 12971549 (-) True trnap-cgg_1
unassigned_transcript_1090 other downstream 114946 12971083 ~ 12971154 (-) True trnap-ugg_5
unassigned_transcript_1088 other downstream 1113320 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1087 other downstream 1113549 11972480 ~ 11972551 (-) True trnag-ucc_1
XR_006251151.1 other downstream 2016642 11055035 ~ 11069458 (-) False brdt
unassigned_transcript_1092 other upstream 311423 13420647 ~ 13420718 (-) True trnaa-cgc
unassigned_transcript_1093 other upstream 311605 13420829 ~ 13420900 (-) True trnaa-cgc_1
unassigned_transcript_1094 other upstream 312096 13421320 ~ 13421391 (-) True trnaa-ugc_1
unassigned_transcript_1095 other upstream 312400 13421624 ~ 13421695 (-) True trnaa-cgc_2
unassigned_transcript_1096 other upstream 312581 13421805 ~ 13421876 (-) True trnaa-cgc_3

Expression Profile