RNA id: XM_043241684.1


Basic Information

Item Value
RNA id XM_043241684.1
length 2124
RNA type mRNA
GC content 0.45
exon number 19
gene id utp6
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10101483 ~ 10106808 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCGGAGATATTTTCTGATGAGCAACCGGATGTAGAGCGCATGACAACTTCCCGTCCCCACGTGTGTAGAGATGTGAAGCAAGTCAGGGTTCGCTACTTTGCTAAGACTCTGAATAACttgtacatttgtttaaagATTTACCTCACAACCCTTAGAAATGGCAGACAGTGTGCAACAGCGATTAGAGGACAGAATACCGGCGCTCGAACAGCTAGAAAGAGTCGGTTTGTTCACCAATAAAGAAGTTAAGTCTATGTTAAAAAGATCTACTGCTCTCGAATACAAGCTTCACCGAAAATCTCAGAGCAAAGGCGAATTTATTGCGTATATACAGTATGAAATAAACGTCCTGGAGCTCATCAAGAAGAGAAGAGCAAGAATTGGTTATCATTTTAAACGGGAGGAAATTGAGTATCCCATCATTCATCGCATAAACCATATATTCAGATGGGCTACAACAAAATGGCAGGAAGATGTGCAGCTTTGGCTTTCTCAGGTTGCCTTCAATAAGAAATGGggcACAAAGTCTCAACTCAGCAAGGTTTTGTCATCTATGTTAGCTATCCATCCTGACAAACCAGCTTTGTGGATAATGGCTGCTAAGTGTGAGATGGAGGACAGGAACTCTTCAGAGAGTGCTCGCCATCTCTTCCTCCGTGCCTTGCGCTTCCATCCTGAGAATAAGAAGGTCTATCAGGAGtattTCCGGATGGAACTCATGCATGCTGAGAAACTAAGGAAACAGCAGCAGGAGTTGGAGCAAGCTAAAATAGACGTGGGGGAATATACCTTTTCTGCTGAAATCTTGAGTGGAAAACTTGCTGAGGTGGTGTACAGAGATGCTGCACAAAAAATTAAAGGGGCTGAATTCATGTTGTCACTGCTACAGATTGCTGCCATCTTCGACTTCACAAAGGAGCTACAGGACACCATCCTACAggaCGTGCAGAGTCAGTATGTTGAAGACTGCGTGATGTGGGATTTCATGGCTAAGCGGGAGCTGGATGCTGCTGGAGCCCCGGAGCTTCAGTCTGCGAAGGGAAGAGCTTCTGATACGGATCGCAGAGAAGAACGCTGCTGCGTCGTTTACGAAGAGGCACTAAAGAGCCTTAATACAGaggcCATGTGGACATGTTATGTCACATTCTGTCTTGAGCGATATAAGAGGAAGACAAACGTCACTGAACTCAAGGAAAAGAGAAAGGAACGACTACTCGGAGTCTTACAGAGTGCTCATGACGCCAAGCTTTTGCAAGAGACATTCTACAAGAACTGGctgcagGTCCTTTTGTCGTCAGGGGATACAGTATCTGCTACCCAGATCGCCATCACAGCCACCCAGTACTTCAGCCAATCAGTTGAGATGTGGAGCTTCAGCCTCCAGATATTGGTCCATATGGAAAGCTCAGAGGCGGGACGTCTATTCCAGGAAGCCCTGAAACACGTGAATCCCAAGGAAAGTCTGCCGTTATGGCAGCTGCAGGCAGACTGGAGCATGACCTCACAGGTACCAGAAGACACCGAGACCTTTTTTCAGAAAGGGCTTGTGTCTCCAGCTCCTGCAGTGTCATCTGCCATGAAGGAGAAATACCTTGAATGGTCATATAAAACTGGTGGTTACAAAAGGGCTAGAAAaactttcaaaagCTTACATGAACACAGACCCTTCACCAAGACATTCTTCAGGAAGATGATTGAGATTGAAAAAGAGCAGGAGACACCAAAGATGAGTAACCTCAGAGACTACTATGAGCGAGCGCTTCGTGAATTCGGTTCCTCAGATGAAGATCTCTGGATTGAATACATCAAGGAAGAGTTAGAAAGGCATGGAAACCCAGAAAACTGCGGGAAGCTCCACTGGAGGGCTGTTAAGACCCTGGAGGGCGAAAGCGTTGAGCGTTTTACCACGAAGTACACACTTCTGCAGACCGGGCACATGTAAACACAACATCAGTCTTCAACGTTTTTTCTGATTTGTTCATATTTGGACCTCAAACCTCGATTTCTCTTTCAAAAGCCCAATTCCCTTTTTCCTCTGAAATGTTTCAAACATGCTAGTGCATGgacatttgtgcttttctgtTGTTCCAGTAATAAACATTTAAGACATTTgtcttttaaa

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K14557 UTP6; U3 small nucleolar RNA-associated protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65311 lncRNA downstream 3304 10097980 ~ 10098179 (-) True G44105
TU65294 lncRNA downstream 17208 10083990 ~ 10084275 (-) True G44095
TU65251 lncRNA downstream 83415 10013936 ~ 10018068 (-) True G44065
TU65221 lncRNA downstream 152498 9945667 ~ 9948985 (-) True anapc11
TU65222 lncRNA downstream 152498 9945667 ~ 9948985 (-) False anapc11
TU65386 lncRNA upstream 32097 10138905 ~ 10145147 (-) True cd7al
TU65412 lncRNA upstream 131611 10238419 ~ 10238618 (-) True G44167
TU65413 lncRNA upstream 135402 10242210 ~ 10242509 (-) True G44168
TU65408 lncRNA upstream 135896 10242704 ~ 10243401 (-) False tnrc6c2
TU65477 lncRNA upstream 249206 10356014 ~ 10356314 (-) False LOC122347367
XM_043242429.1 mRNA downstream 52615 10039427 ~ 10048868 (-) False trim25
XM_043242426.1 mRNA downstream 52622 10039427 ~ 10048861 (-) True trim25
XM_043242427.1 mRNA downstream 52626 10039427 ~ 10048857 (-) False trim25
XM_043242428.1 mRNA downstream 52627 10039427 ~ 10048856 (-) False trim25
XM_043242033.1 mRNA downstream 73803 10025453 ~ 10027680 (-) True c6h17orf67
XM_043240990.1 mRNA upstream 17007 10123815 ~ 10126741 (-) True tefm
XM_043240992.1 mRNA upstream 34939 10141747 ~ 10145168 (-) False cd7al
XM_043240987.1 mRNA upstream 39416 10146224 ~ 10152064 (-) False znf207b
XM_043240986.1 mRNA upstream 39416 10146224 ~ 10152064 (-) True znf207b
XM_043240988.1 mRNA upstream 39416 10146224 ~ 10152063 (-) False znf207b
TU65247 other downstream 73848 10025578 ~ 10027635 (-) False c6h17orf67
TU65030 other downstream 829178 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 830561 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 834159 9266002 ~ 9267324 (-) True G43896
TU65020 other downstream 840238 9260616 ~ 9261245 (-) True G43890
TU65385 other upstream 34803 10141611 ~ 10145147 (-) False cd7al
TU65678 other upstream 603237 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 948227 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 948227 11055035 ~ 11069457 (-) False brdt
unassigned_transcript_1087 other upstream 1865672 11972480 ~ 11972551 (-) True trnag-ucc_1

Expression Profile