RNA id: XM_043241696.1


Basic Information

Item Value
RNA id XM_043241696.1
length 2648
RNA type mRNA
GC content 0.42
exon number 7
gene id rab6ba
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12944295 ~ 12965465 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTTTTCCTCAGATCCCACTGATCTGTGGACCCCTATCGATCCGGCAGCTGCCCACAGGAGCTACAACCGAGGAGACCAGGGCCATCTGgataaaagcacacaaaacGCCTCCGCGACAATTGGAATTGACTTCCTGTCAAAAACCATGTATTTGGAGGACAGAACGTTGGGGCTCTCTGACTTGCAGGTTCGGTTGCAGTTGTGGGACACGGCAGGCCAGGAACGTTTCAGGAGCCTCATTCCGAGCTATATAAGAGACTCCACCGTAGCTGTGGTGGTGTATGACATCACAAatGTGAATTCATTCCAGCAAACTTCCAAATGGATCGATGATGTGAGAACGGAgagaggaagtgatgtcatcaTCATGCTGGTGGGCAATAAAACAGATCTGGCAGATAAGAGGCAAATCACGATCGAGGAAGGCGAGCAGCGGGCCAAGGAGCTGAGTGTGATGTTTATCGAGACCAGTGCCAAGACAGGCTACAATGTCAAACAGCTGTTTCGACGTGTGGCAGCTGCCCTTCCAGGAATGGAGAGCATGCAAGAGACAAGCAAAGAAGGCATGATTGACATTAAATTGGACAAACCACAGGAGCCTCCGACTACCGAGGGTGGATGTTCCTGTTAATAGCTCACATCTGATTTCCAGCATCATCTACACCACGTGCTTGTTGTGTTGCTTCCTCTTGGTTAGCTTCCAGTTGTGTTTTCAGATTGGATATTTGGCCTTCCCATCTGACTTTAGTAACTGGTTGGAATCAGTGTTACAtcaatttcaaatgtaaaatagtaTACTTTAGTAACAAAATTGCCAAAAATCCTAAAAATTCgaaatcaacaaaaatgtagACTATGTCCAACGTAtatactttttgaaaatgtagagaggtagattttttttcttctttgttttgtatttttgtatacaaGGATGAGCACTAAATTCTATAATTTTGCCATAAAAAGCAGGATTCGAAAAGCAGGAGGGCAATTCAAACAACTAATAACCACAAAAATATGGAAAACGTGCATGTtagccatttttaaaagtatcatCTCAGTCCTGCTGGCTACTGTGCGCAAGATTATGTGAATCCGtacgttttttttctgactcGATGCACTTCATGCAATCAGCTCATTTCAGCCTGTTTTTCTTGCCGTGACAgaacttgaaattttaagtttaagGCCAAGTGaatttgtgtaaatgtgtcACTTCCGATCCCTAAAAACCTTTccatagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttctttttaaaaacacgttTATATGCGGTTCGTGTCTTAATTACGTGGTTTATTGAATGTTTACGGCATCATTTTTCTTTAGAATTTCCTGTTCACGATGAAAGGAAACGGCTCGTGCAAACGACCTAACACGAGAAAAGGATTCCCTTTCTTCggtggaatgttttttttattctttaactAAATTAGGGCGTTTAGTGCAGTGCAGATAGTCGCAAGACCGTGAACGCGACAGAGGAGCAAATCATGCATCCAGACTTGTTCGTTCATATTTAATTGATTGGAATAACTCATTTGCACGTCAGCGGTTTTCCACGCCGATTCATCAAACAGCCCGATTCCATTGTAAATACATCAGCTGTCGTTTTCAAGCAGGCTTTAATATCAGAAATGCAAAGATGGGACATTCCTCCAAAAATAACTGTAGTTTCACTTTTAAGAAATTAGCATTATGCAGCATTATAGTGTTTGCCTCGTGTAGAAACCCACTCATGTCTACAGCTGCTCTTTGGGCCAGTAAATTGTAGTGCACTGACCGGGGACATACGTGTAGTATATCAGTTTCTTTGAAATGTGTTTCATGTGAATCCTAAATGCACTTTTTCGACAAAGGAAGATGTAAATGTTTCCAAATTTGCCGTCGAACGTCTGTCCTCGAAACCACTTTAGAGTTCAAACTGTAGCGTACATCTCTGTGAAAACCTCTCGAGGGTCACTGTACAGATAAACTGTTTGTAAATTTGCTTCACACGACGTCATATACGAGTCGAGACTAGCTATTTGTGACATTGAGAAATCGTGAGTAGGAGCACATGACACAGCGCCCCGAATCCAAGCAGAATCCAGCGAGGTTTAGTCGGAATGGAAGGTGAATTCCACTGAACTGACTGACTCATATCAAACCCTTTTCGTCACGCTTTTGGTTCGTTTGGAAGCTTGAAGGGGATCAGATTCGTCTGTGCCGATGCTTTCTCAAATCGCAGAGAGGTTCAGAAAAGCTGGGTGGaggtatttattgtttttgtttacattttgctttCTGTCTTCTGAAAAGAGGTTTGAATTTAATGGGGCGCAGATACGCGTCATATCATCATTGTACCTGTACAACCGGTAGTCATTGTGATTGACACGACGCTACATCAGCCTTGGGTGAATGTCTGTGCGTGAGTTGAGTTATGCTTTTAAGGGTGCAACCATTCCCGGTGTATATGTTTTAGCTCGGTGGAGCCAGCCTGATTGATTCAGAGCTAGCTTTACCATTCACACTGTATAGAAATCTAGCATGTTGGTCCAAAtcagtaaaatcaataaaagtgtcttattaccaaaaatgta

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66087 lncRNA upstream 156124 12786119 ~ 12788171 (+) False crocc2
TU66075 lncRNA upstream 244718 12664820 ~ 12699577 (+) True G44622
TU66062 lncRNA upstream 272630 12564092 ~ 12671665 (+) True G44611
TU66058 lncRNA upstream 417405 12521773 ~ 12526890 (+) True LOC122347491
TU66052 lncRNA upstream 450653 12492953 ~ 12493642 (+) True G44606
TU66066 lncRNA downstream 117915 13083380 ~ 13084230 (+) True G44615
TU66120 lncRNA downstream 128391 13093856 ~ 13095910 (+) True G44640
XR_006251172.1 lncRNA downstream 135814 13101279 ~ 13103566 (+) True LOC122346816
XR_006251171.1 lncRNA downstream 136807 13102272 ~ 13103566 (+) False LOC122346816
TU66449 lncRNA downstream 348088 13313553 ~ 13313854 (+) True G44872
XM_043241313.1 mRNA upstream 46398 12881334 ~ 12897897 (+) False slco2a1
XM_043241315.1 mRNA upstream 46398 12885390 ~ 12897897 (+) True slco2a1
XM_043242408.1 mRNA upstream 66510 12838229 ~ 12877785 (+) False ryk
XM_043242406.1 mRNA upstream 66510 12838242 ~ 12877785 (+) True ryk
XM_043242407.1 mRNA upstream 66510 12838243 ~ 12877785 (+) False ryk
XM_043242297.1 mRNA downstream 6626 12972091 ~ 12981529 (+) False cep63
XM_043242298.1 mRNA downstream 6648 12972113 ~ 12981529 (+) False cep63
XM_043242300.1 mRNA downstream 6705 12972170 ~ 12981529 (+) False cep63
XM_043242294.1 mRNA downstream 6706 12972171 ~ 12981529 (+) True cep63
XM_043242295.1 mRNA downstream 6706 12972171 ~ 12981529 (+) False cep63
TU66085 other upstream 163375 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 851840 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 934186 12002148 ~ 12010109 (+) False LOC122346564
unassigned_transcript_1089 other upstream 971251 11972971 ~ 11973044 (+) True trnai-aau_2
TU65824 other upstream 1523965 11415273 ~ 11420330 (+) False G44478
TU66063 other downstream 115145 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 143270 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 428764 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 1006708 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 1115468 14080933 ~ 14081004 (+) True trnag-ucc_2

Expression Profile