RNA id: XM_043241778.1


Basic Information

Item Value
RNA id XM_043241778.1
length 2873
RNA type mRNA
GC content 0.43
exon number 14
gene id acox1
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 8933083 ~ 8951173 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCAGCATGAAGACCTGAACTTCCTCTCCCGCAGTGAGAGATACGATGCAGCAGTGCAGAAGAGTGCTCAGATGATTCTGAAGATTAGGGAATATGGTATCTCTGATCCAGAGGAGATCTACGCTTACAAGAGTATTGTGAGGGGTGTGTATCAAGAACCCTTAGGTCTCCATTTTGTCATGTTCATACCCACCTTAAACAGCCAGTGCACAGCTGAACAGCGCAAAAAATGGATCCCATTAGCCGAGTCATTCCATATGTTAGGCACCTATGCTCAGACAGAGCTGGGGCACGCTGTGTGCACCGGGGGCGTCCAGAACCCCTTGACCTGCACTTGGGTATGTTCCTGCCGACGCTGTTGAACCAATCCTCCCCTGCACAACTGGACGCTTTCTTCATGCCAGCATGGAACTTGGAGATAATTGGCACCTACGCGCAGACTGAGATGGGGCACGGCACACACATCCGTGGTCTTGAAACAACTGCTACATACGACCCTTCCACCCAAGAATTTGTTTTGAACAGTCCAACAATCTCTTCTATTAAATGGTGGCCAGGTGGATTGGGTAAAACCTCAAATCATGCTATAGTCCTGGCTCAGCTGTACACGCAGGGCAAGTGTCATGGCCTACATGCCTTTATCACACCCATTCGCTGTATGAAGACACACATGCCACTGCCAGGTGTGGTCGTTGGTGATATTGGCCCAAAATTTGGTTTTGATGAGGTGGATAATGGATACTTGAAACTGGAAAATGTCAGGATTCCACGTGAGAATATGTTGATGAAATATGCCAAGGTTGAGCCGGACGGGTCTTACGTGAAGCCTCCTAGTGATAAACTCACATATGGCACCATGGTGTTTATTCGCTCAATGATCGTGGGGGAGTCCGCACGAGCTCTCTCCAAGTCCTGCACCATTGCCATTCGTTACAGTGCAGTCCGACACCAGTCTGAACTACGGCAAGGagAGCCAGAGCCACAGATCCTAGACTATCAGACCCAGCAGTATAAACTCTTTCCTCTGCTGGCCACTGCCTATGCCTTCCACTTTGTGGGGCAATACATGAGTAAAACATATCATCGCATCACAGGAGACATTAATCAGGGTGACTTCAGTGGACTGCCAGAGCTACATGCTCTATCTGCAGGTCTGAAAGCTTTTACCACCTGGGTGGCCAATGCAGGAATTGAGGTTTGTCGCATGTCGTGTGGTGGTCACGGTTACTCCCGCTGCAGCAGTTTACCTGACATCTATGTCACCTTTACACCGACCTGCACTTATGAGGGGGAGAATACTGTTATGATGCTGCAGACagctagGTTTTTACTGAAGAGCTACAAACAAGCACGGGCAGGTCAGCAGTTGACGGGCATTGTTTCTTACCTGAATGAACCTCAGACGAGGATACAGCCCCACTCCGTGTCCTCCCGGCCCACTGTTGTTAATATCAATGACCTGGCCAGCCTCGTGGAGGCATACAAATACAGAGCTGCCAAGTTAGTTGAAATGGCAGCTAAGAACCTCCAGGTGGAGCTACAGCACAGCAAGAGTAATGAAGACGCCTGGAACAACAGTTCCATTGATCTAGTCCGAGCATCTGATGCACACTGTCATTATGTGGTGGTAAAgctgtttgctgctaaactcAGTGAGATTGGGGATACTGCTGTCCACTCAGTGCTCAGCACTTTGGCTCTGCTTTATGCTCTTCATGGAGTTGCACTGAACTCTGGAGACTTTTTACAGgCTGGTCTGCTAACTGTTCCTCAGCTGGCTCAGATCTCACAGAGGCTGAAGGATCTTCTCTCAGAGATAAGGCCCAACGCAGTGGCTTTGGTTGATGCCTTTGACTACCGTGATGAGATGCTTAATTCTGCTCTGGGAAGATACGATGGCAACGTCTATGAGCACATGTTTGAGTGGGCCAAGAGGTCGCCTCTGAACCATACTGAGGTACATGAGTCCCACCACAAGTACCTAAAGCCACTACAGTCCAAACTGTAAGAAGTGCCTTTATTGGAGAAAGGGAAGAGTCTGTCCaagaaaaataatactgttaGCTCTCCTGTCCACCACCACTGGGTTTTCTGGTCATCTACTGTAGAAAATGAATTTGTCAgtaaagaaattatattaatttttaaaggatATGGTTCTATGCCTAATTCTAATTATTTAGAGCAGTAAGTCATGATTGCTTACTTTGTGCACTTAATGATCATTTCAAGTTAAATCACTTagattactttttgtaattgtataaattgtattcatttttgctTAATTGGTTTTTCTACAGGATTTAAGGTTACAATAAACTGATGGTTTATGATGCTTCAGATtctaaaagctgaaattaagagactatatttaaataaattctcaaTTCTCTGTGTGACAAACTTGAAATGCACAACGTGAATATTgcacaatgaataaataatgtttgagtttaaaatgattaattactaaataatgaatcatttgactTCTCAGCATCTCTTAAAATCATGCCTTAAGATCCTCAGACAGgaatcttttatttcattttctttttatttcttttgtagcGACAGTCAGAATTATTGTGCAGTATTAGTGTCATTCCATTGCAGTTATTTACACCATTTACATAGTCATCTACTAATTTGTGTcctgatttttttctgttgttatttCAACTTTTATGCTACattaataaaggaataaattaacACTTACAGCAGTGTTTAAATAGCATTTCACTTACATTTATGAATGTGGTCTCGCGATTTGCATGTCTGATTACAATTCAAAGATACAATTGTTGtagtacaatgtttttttttttcacctttcttccaaacctaataaaaaatgaattcagaa

Function

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0005777 peroxisome cellular_component
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function
GO:0003997 acyl-CoA oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64892 lncRNA downstream 138343 8599796 ~ 8794740 (-) True G43791
TU64904 lncRNA downstream 225109 8706786 ~ 8707974 (-) True G43800
TU64815 lncRNA downstream 386520 8546353 ~ 8546563 (-) True G43739
TU64808 lncRNA downstream 436450 8495764 ~ 8496633 (-) True G43734
TU64790 lncRNA downstream 466437 8460906 ~ 8466646 (-) True G43719
TU64978 lncRNA upstream 72095 9022519 ~ 9022881 (-) True G43855
TU64979 lncRNA upstream 74784 9025208 ~ 9025429 (-) True G43856
TU65011 lncRNA upstream 300275 9250699 ~ 9251679 (-) True G43881
TU65008 lncRNA upstream 301562 9251986 ~ 9253068 (-) True G43880
TU65014 lncRNA upstream 305302 9255726 ~ 9256009 (-) True G43884
XM_043242055.1 mRNA downstream 650 8886508 ~ 8932433 (-) False LOC122347059
XM_043242054.1 mRNA downstream 650 8886508 ~ 8932433 (-) True LOC122347059
XM_043242056.1 mRNA downstream 7383 8886508 ~ 8925700 (-) False LOC122347059
XM_043242890.1 mRNA downstream 49919 8857534 ~ 8883164 (-) True ube2o
XM_043242528.1 mRNA downstream 383844 8547278 ~ 8549239 (-) True si:dkey-45d16.4
XM_043241665.1 mRNA upstream 4832 8955256 ~ 8967380 (-) True evpla
XM_043241779.1 mRNA upstream 21250 8971674 ~ 8995633 (-) True srp68
XM_043242589.1 mRNA upstream 332979 9283403 ~ 9299043 (-) False nol11
XM_043242588.1 mRNA upstream 332979 9283403 ~ 9299043 (-) True nol11
XM_043241579.1 mRNA upstream 358162 9308586 ~ 9352668 (-) False si:dkey-237i9.1
TU64905 other downstream 219225 8712021 ~ 8713858 (-) False G43801
TU64907 other downstream 221123 8708706 ~ 8711960 (-) True G43801
TU64510 other downstream 885075 8047102 ~ 8048008 (-) True G43514
TU64425 other downstream 1346716 7579895 ~ 7586367 (-) False G43463
TU64424 other downstream 1349963 7579895 ~ 7583120 (-) False G43463
TU65020 other upstream 310192 9260616 ~ 9261245 (-) True G43890
TU65026 other upstream 315578 9266002 ~ 9267324 (-) True G43896
TU65029 other upstream 318764 9269188 ~ 9270922 (-) True G43899
TU65030 other upstream 320994 9271418 ~ 9272305 (-) True G43900
TU65247 other upstream 1075154 10025578 ~ 10027635 (-) False c6h17orf67

Expression Profile