RNA id: XM_043241779.1


Basic Information

Item Value
RNA id XM_043241779.1
length 2769
RNA type mRNA
GC content 0.42
exon number 16
gene id srp68
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 8971674 ~ 8995633 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACGATTTATCCTCATCCGCTGGTTCTACAGACGTGTGCTTGGTAAAAATGGCCGCGGAGCAGCAAAATGAGGTGAAAACACAGCAAATGGAGGGAAATAAAGAGAACAGCGTCGACGGGAGTCTTGGTCTGGAGATCCTGCAGATCATTAAGGACTCTCAGCAGCAGCATGGGCTCAGGCACGGGGATTACCAGCGCTACAGGGGTTATTGCTCAAGACGTTTACGCCGGTTGAGAAAGACATTGGGCTTTAAAATGGGCAACAGACACAAGTTTACTGGGAAGAAAGTAACTGTGGAGTTGCTTTCAGACAACCGACATCTGTTATTAGTGTTAATGGAGGCAGAAAGAGCATGGAGTTATGCCATGCAACTGAAACAAGAAGCTAACACTGAGCCCCGAAAGCGTTTCCACCTGTTGGCTCGCCTGCGGAAAGCAGCCAAACATGGGGAGCAGCTAGAGAAGTTGTGTGAGAGTTCCCGTGTGGATGCCAAGACCAAACTAGAAGCTCAGGCATACACTTCTTATCTGAATGGCATGGTTCAATTTGAACTGCAGGAATGGAAATCTGCAATGGAGGCCTTTAACAAGTGCAAGACCATCTATGAGAAACTGGCAAGTGCTTTTACTGAGGAGCAAGCAGTGCTTTATCATCAGAGAGTGGAAGAGATTTCACCTAACATCCGATACTGCGCATATAACATTGGTGACCAGAATGCTATAAATGACCTCATGCAGATGAGACTGAGTGCAGGAGGAGGTGGTGGCATGATGGCAGAAAAATTGGAGGCTCTGATTACTCAGACGAGGGCTAAGCAGGCAGCTGTAATGAGTGAGGTTGAGTGGAGAGGTCGTACAGTGCCTGTCAAAATCGACAAAGCCAGAATCTTCCTGCTAGGTCTGGCAGACAATGAAGCTGCAATTATGCAGGCAGTTAATGAAGAGACAAAGGAGCGTCTTTATGAGAGCCTGCTGGCGGAGTGTAGAGACACCATTCAAGCTGTCAGAGAAGAGCTCAGGACTGATTTGaagcagagagagagagcagcagaAGGTGCTGATAGTGGAAAGGTGTCTAATCTGCAATACCTGCACAGCTACCTGACATATATCAAGCTGTGGACTGTAGTGAGGAGGAATGAGAGCATGGCTCATGCACTGCAAGCTAAGCTGAAGGAGCCACAGACTGATGAGAATAAGAGAGGACCACGACCACAAGATCTCATACGACTCTATGACATCATCCTGCAGAGTCTTTCTGAGCTGTCATCACTGCAGGGTCTAGAGGAGGACCATACCTTCCAgaaagaagtagcgcttaagaCTCTGGTCTACAAAGCTTACAGATGTTTCTATATAGCTCAATCCTATGTTCTGGTGAAGAAATGGAGTGAAGCTCTGGTTTTGTATGAAAGGGTTCTGAAATATACGAGAGAGGTCCAGTCCAAAGCCAAGAGCCTCAATAACAGCCTTAAGGATCTTCCTGATGTCCAGGAGCTGATTGCTGAGGTCAATGCAGAAAAGTACTCCCTCCAAGCTGCAGCCATCTTAGacACAGAAGATGTTGCTGAGGTGCCCCCACAGCAGCAGATAAAAGACACCACGCCTCTCTCTGACCGTTTGGATAATTTCCGGCTAGACCCCACCCTCTTGAGCAAGCAGCCCAATCTGGTGCAGTTCCCTCCAGATTTCCAGCCAATTCCATGCAAGCCTCTCTTCTTTGATCTGGCTCTCAACCATGTGGCTTTTCCGCCTCTTGATGACAAGGTGGAACAGAAGGGCAAGGGTGGCATCACTGGCTACTTCAAAGGCTTCTTTGGCTTTGGAAGTTAAATCTGGCCTGTTAGTATTCAAAGTCGTCTTAATATAACCATCCTCTCAAGACTAAAAGTTATGGATCCTTATACAGTCAAACCATTTCCccaaaatgcattatacatttttaaagagatcTAAGTACAGCCTGGCTGGTagtaaattgactttttttttgtttttattattaatttatagtCTGCaagaaagtgttttataaaTCCTGCCAAGTATAATAATCAGTGGTAATGCTTGGTGTCACTATACTCTCTTATCCagagtaaaactttttttttttgtttgtttttttttttttaaataaacataactcTGCCTAGATCTCAATTTGCCTATCACATTATAATCCCACTATTATTCTTTCACGGAAAGTCTACAACTCTGCTGAAGACCTAAAAGATTTGTTCCAACTGTGGGCTTTAGTGGTCAGTCATGTCAATAATGTTGATGACATAAAGTACTCAGTGTTCATTCAATAAAACGATATTACTGTCACTTAAAGAGTCAGCTGACAGAACACAGGATTTTCATCGTTACGCCGTTTTATGTATAGATAATGTGAAGGGCTATAGGTAATATCATCTTGCATGTACACTGCcatagtttagtttaaaatgtcatgACTTATTTTGACTCATCTGAATGCAAAGCCATAAAGCAGAAAGCGAtttgctaatgttttatttgtgattatttcgtaaatatagttttaactttaattggattttttttttcattctaattGTTTAAACTTTCaggtgagggtttttttttcttcttgttttgtgAACAAATGTTGTTGAGAATTAATTTAATCGTCAGTAGATATGTATTACACCATTTATGATGAGCCTGTTCAAGTGGATAGGATATTAGAAATTATGAGTGAATTTTGGTTTGAAGTCTCCTGATTTAACAATAAAACGTTAAAGTATT

Function

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0005786 signal recognition particle, endoplasmic reticulum targeting cellular_component
GO:0005047 signal recognition particle binding molecular_function
GO:0030942 endoplasmic reticulum signal peptide binding molecular_function
GO:0008312 7S RNA binding molecular_function

KEGG:

id description
K03107 SRP68; signal recognition particle subunit SRP68

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64892 lncRNA downstream 176934 8599796 ~ 8794740 (-) True G43791
TU64904 lncRNA downstream 263700 8706786 ~ 8707974 (-) True G43800
TU64815 lncRNA downstream 425111 8546353 ~ 8546563 (-) True G43739
TU64808 lncRNA downstream 475041 8495764 ~ 8496633 (-) True G43734
TU64790 lncRNA downstream 505028 8460906 ~ 8466646 (-) True G43719
TU64978 lncRNA upstream 26886 9022519 ~ 9022881 (-) True G43855
TU64979 lncRNA upstream 29575 9025208 ~ 9025429 (-) True G43856
TU65011 lncRNA upstream 255066 9250699 ~ 9251679 (-) True G43881
TU65008 lncRNA upstream 256353 9251986 ~ 9253068 (-) True G43880
TU65014 lncRNA upstream 260093 9255726 ~ 9256009 (-) True G43884
XM_043241665.1 mRNA downstream 4294 8955256 ~ 8967380 (-) True evpla
XM_043241777.1 mRNA downstream 20501 8933083 ~ 8951173 (-) True acox1
XM_043241776.1 mRNA downstream 20501 8933083 ~ 8951173 (-) False acox1
XM_043241778.1 mRNA downstream 21250 8933083 ~ 8950424 (-) False acox1
XM_043242055.1 mRNA downstream 39241 8886508 ~ 8932433 (-) False LOC122347059
XM_043242589.1 mRNA upstream 287770 9283403 ~ 9299043 (-) False nol11
XM_043242588.1 mRNA upstream 287770 9283403 ~ 9299043 (-) True nol11
XM_043241579.1 mRNA upstream 312953 9308586 ~ 9352668 (-) False si:dkey-237i9.1
XM_043241581.1 mRNA upstream 312953 9308586 ~ 9352668 (-) True si:dkey-237i9.1
XM_043241580.1 mRNA upstream 312953 9308586 ~ 9352665 (-) False si:dkey-237i9.1
TU64905 other downstream 257816 8712021 ~ 8713858 (-) False G43801
TU64907 other downstream 259714 8708706 ~ 8711960 (-) True G43801
TU64510 other downstream 923666 8047102 ~ 8048008 (-) True G43514
TU64425 other downstream 1385307 7579895 ~ 7586367 (-) False G43463
TU64424 other downstream 1388554 7579895 ~ 7583120 (-) False G43463
TU65020 other upstream 264983 9260616 ~ 9261245 (-) True G43890
TU65026 other upstream 270369 9266002 ~ 9267324 (-) True G43896
TU65029 other upstream 273555 9269188 ~ 9270922 (-) True G43899
TU65030 other upstream 275785 9271418 ~ 9272305 (-) True G43900
TU65247 other upstream 1029945 10025578 ~ 10027635 (-) False c6h17orf67

Expression Profile