RNA id: XM_043241799.1


Basic Information

Item Value
RNA id XM_043241799.1
length 2389
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC122346913
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 9778250 ~ 9781983 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCTGCATAGATCAGGGGACAGCGCTGTGGTGCTGAAACAACACGTTACTCGCACATCAAACCACTGCAAAGAAGGCAACCCGCAATGGAGAGAATTTCATGGATActttttctgctctctctcacaTATCTGGAGGGATCTTCGCAAGATTTCGGACAGACACAGTTTATCTGCACGTCTGTGCCCAAGGATATGGACCTGTGCGCAGCCACTATGCAGAACACCGGACCAGCGGAGGATCTGAAGACCACAGTAATGCAGTTAAGGGAGACGGTCTTACAACAGAAGGAAACTATCATGAACCAAAAGGAGACGATCAGGGAACTAACTTCTAAGTTGAGCCGCTGTGAGAGTCAGGGTATTCTGGAGCCCGTGGCTGGAGGTCGGAGAAAAGAACCGGGCAAAAACACAATGGGAGACGTGTCCCGTGGCCCGACAGATACTTTAGCCCAACTCGGGCAGACTTTAGCCACGCTTAAACAGAGATTGGAAAACCTGGAGCATTACAGCAGGAACAACGGTTCTGTCCAGGCAAGCAGTCTTAAAGATCTGCTTCAAAATAAGATCGATGATATGGAGAAGCAGGTGCTGTCCAGAGTCAATACTCTGGAGGAGAGCAAACCCGGGCAGAAGAACGACACGGATCAGCGCAATCGAGTGGAGTCAACGCTCACCTCCTTACATCAAAGAATTAACGACCTAGAGAAAGGTTCAAAAGGTAGCAGGCCACTTGACAAGTTTCAGATAACATTTCCCTTAAGAACAAATTACATGTATGCCAAAGTGAAGAAAAGTCTACCAGAAATGTATGCCTTCTCTTTCTGCTTGTGGATAAAGTCCAACGCATCACCTGGGGTGGGAACCCCCTTCTCCTATGCTGTTCCTGGGCAAGCTAATGAGCTTGTTCTCATAGAATGGGGGAACAATCCAATGGAGCTTCTTATAAACGACAAGGTTGCAAAATTACCTTTCATCATCAACGATGGTAAATGGCATCACATCTGTATCACTTGGACGACTCGTGATGGAGTATGGGAGGCATTTCAGGATGGTGTTCTGCGTGGAACTGGAGAGAATCTGGCACCCTACCATCCGATAAAACCCAGCGGTGTACTGGTTTTAGGTCAGGAGCAGGACACACTTGGTGGAGGTTTTGATGCAACCCAAGCCTTTGTAGGTGAACTGGCAAATTTTAATATATGGGATAGAAAATTAACAGCTGGAGAAATCTACAACCTGGCAACCTGCAACAACAGAGCACAAGCTGGAAATGTGTTGTCATGGTTGGAAAGTAATATCGATGTGTTCGGTGGAGCCACTAAATGGACTTTTGAGCCCTGCCGTCAGCTCAACTGAACTGCAAAGTGAGGGCCATAGCCAAGCtcagatttatgtttttagttttggtaTGTCTTTTCCTTAGTTTGACgttcttttaaaagaagaaatcttgataaaactatttaaaggtACTGTAAGAGTAAACCTGGGGTTTCTATGAATACCTAAATATTTCTGGGCAaaactaagatttttttttgtcttgataaAACAGTTTGTGTTGGTTGTTTTGCAAACCTCAAAGTGACAGTTTTAAGCCAGGTtacttttagtattattttttttgcggcttcatttattttttgcaagtGGTCACAGTTCTTTGCTTATTTtgtcattcatattttttttttgaaggggcCAGCAGCTGAACAGCTGTCTCTTTGCTTTTAGATAGTAAAGCAACAGTGCATCAGAACTGCATCATTCTTGTGTTTTCCGAACAAGACTTCACAAATTGTAAGGTGATGGTTTATTTGTAATCTGCACTTAACAGTACCCCATTCTCACCGGATTTTGCACTGTGATGGACTTGAAAATGGGACGggaaaagtatttatttatttatttacttatttgttcgctcatttattcaaaaaataatgaagAAGATGGCACTTCATTTGTTTCCAGTGATCTGACCAATGTTTCTGCAAGAATGTTGTTTAGTTGCCAATATGCTTAAAGCCTGAGTGCCTTGAGCTGATGTATCAGTTCAGCACATACTTGTTTGCTTACTCGTGCTTTGCTTTatctttttgcttttgttgatTAAtcgtttttatgaaatgtttaacaGCGATTGTTAAGGCTCTGGTGTGTTTAGCAATAACTGGTGTGTTTGTACTCTGTTCTAGGAATGTTATTTGTACAGTAACAGCATGAATTATCAAATGCTGCAACAACAACATTTGCTTATCCTATTGTTTTGGGTCGggttttttactgtattgatATATGCTGAAAGCATGGCACTACTGAGAGATGACGATGATctaatttttgtaataaaattgtgatagAGATATGGAGAGAGTATTAACGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65157 lncRNA downstream 48590 9385109 ~ 9729660 (-) True G43991
TU65049 lncRNA downstream 495782 9281515 ~ 9282468 (-) True G43916
TU65048 lncRNA downstream 496848 9280931 ~ 9281402 (-) True G43915
TU65036 lncRNA downstream 502178 9275640 ~ 9276072 (-) True G43906
TU65024 lncRNA downstream 513676 9264327 ~ 9264574 (-) True G43894
TU65205 lncRNA upstream 110248 9892231 ~ 9898950 (-) True G44031
TU65186 lncRNA upstream 141242 9923225 ~ 9926256 (-) True G44014
TU65187 lncRNA upstream 145248 9927231 ~ 9928405 (-) True G44015
TU65213 lncRNA upstream 148803 9930786 ~ 9932524 (-) False G44036
TU65216 lncRNA upstream 151718 9933701 ~ 9935477 (-) True G44038
XM_043241673.1 mRNA downstream 67652 9586425 ~ 9710598 (-) True LOC122346819
XM_043241579.1 mRNA downstream 425582 9308586 ~ 9352668 (-) False si:dkey-237i9.1
XM_043241581.1 mRNA downstream 425582 9308586 ~ 9352668 (-) True si:dkey-237i9.1
XM_043241580.1 mRNA downstream 425585 9308586 ~ 9352665 (-) False si:dkey-237i9.1
XM_043242589.1 mRNA downstream 479207 9283403 ~ 9299043 (-) False nol11
XM_043242274.1 mRNA upstream 165819 9947802 ~ 9948988 (-) False anapc11
XM_043242275.1 mRNA upstream 165819 9947802 ~ 9948978 (-) False anapc11
XM_043242276.1 mRNA upstream 166060 9948043 ~ 9948978 (-) False anapc11
XM_043242033.1 mRNA upstream 243470 10025453 ~ 10027680 (-) True c6h17orf67
XM_043242429.1 mRNA upstream 257444 10039427 ~ 10048868 (-) False trim25
TU65030 other downstream 505945 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 507328 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 510926 9266002 ~ 9267324 (-) True G43896
TU65020 other downstream 517005 9260616 ~ 9261245 (-) True G43890
TU64905 other downstream 1064392 8712021 ~ 8713858 (-) False G43801
TU65247 other upstream 243595 10025578 ~ 10027635 (-) False c6h17orf67
TU65385 other upstream 359628 10141611 ~ 10145147 (-) False cd7al
TU65678 other upstream 928062 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 1273052 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 1273052 11055035 ~ 11069457 (-) False brdt

Expression Profile