RNA id: XM_043241800.1


Basic Information

Item Value
RNA id XM_043241800.1
length 4481
RNA type mRNA
GC content 0.45
exon number 22
gene id pkn2b
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11449837 ~ 11481193 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGTTTCTGATCACATGACTGGAAGTGTAGGATTTGACTCCAGCTGGgagagcagaggagaggagaggagcgTGTTCAACAATACACGCGTTCAAAACACTCGCCTTTCCTCGGCCCTTTACCTACATCTGTCACGGAGAGCTATTGCATTGGTTTCCTGAAACATTTAAAGCTTTCATAcgaagcttttttttaaatatattttaaacaaggATATTTCGGCAGCGTCATGGGAATTAGGAAGTTTACCGGCTGCGCTGTGGAATAGCGAAAAGTCGTGGATCCGATGTGTTTTCTTCAGAATCGGGAAGAAATACGAGCTAACTAGGAGAGAAGTGAAGAGGTTTAACTTCTTACTGACATTCCTCCTTTTTGCTCCCTTGAGTTTGATTCAAAGTTATTAAGAGGCAAGATGGCGGCCGATCCCGTGCAGAGTGATACTCGGGGTCAGATGGTTTCAGAACGTCTTGGTCTTGGCCAAAATCTGGACCTCTCGGACACAATGGTCCAACAAAAGCTGGATGAGATCAAGGACCAGATAAAACGAGAGATCCGCAAAGAGCTGAAGATCAAAGAAGGAGCTGAGAACCTGAGGAAGGTGACCACAGATAAGAAGAGCCTGGCTTATGTGGACAACATGCTTAAAAAATCCAACAAGAAAGTGGAGGAACTGCACCAGGAGCTTCAGGAACTGAACGCACACATAGTGGTGAAGGACCCAGAGGAGGTTGTAGAGTACCCGCTTACCCCAGACACCCCCAAGAGTGAAGCACGGACGTCCACCAACAGTAGCAGACTGGCCGCTCTGAAGAAACAGGCCGACATCGAGCTCAAAGTCAAGCAGGGAGCAGAAAATATGATTCAGATGTATTCCAACGGCTCTTCCAAGGACCGCAAACTGCTTGCAGCAGCTCAACAGATGCTTCAAGACAGCAAGACAAAGATAGAGTTCATTCGAATGCAGATTCTCAAAGCCAGCCAGACCAGCGAGATGAACTACGAGAACAATGACGTTACTTCAAGCAAGCCTATAATCAGTCCTCTGGACTTGAGGATAGAAGAGCTCCGACATCACTTCCGGATAGAGTCTGCTGTTGCAGAAGGTGCCAAGAATGTGATGAAACTGCTGGGAACGGGGAAGGTGACGGAGAAGAAAGCTCATTCAGAGGCACAAGCCCGTTTGAATGAATCCAGCCAGAAGCTAGACCTGCTGAAGTTCTCTCTGGAGCAGAGACTCAGTGAGCTGCCCAAAAATCACCCGAAGAGCAATCTGATTATGGAGGAGTTAGCAATGGTGTCCTCCCCACCTCTCAGTCCACGCCAAAGCATCATGTCCACCAGCAACAAGTACAGCACTGTGGCCAAACCAGCTGCTCTGACCGGCACATTAGACGTGAGGCTCATGGGCTGTCAGGACCTCCTGGAGAACGTCCCAGGTCGCTCTAAGACGGCATCTGTTTCTCTGCCCGGCTGGAGCCCCAGTGAGGCACGTTCTTCATTTATGAGCCGGGGAAACAAGAACAAATCTGGCAGCAGCCGAACGCTCTCCAAGTCCGATGATCTGTCCAATGAAATCAGTGCCGTTCTGAAGCTGGACAACACAGTTGTGGGACAGACTCATTGGAAGCCAGTTAGCAACCAATCTTGGGATCAGAAGTTCACGCTTGAACTTGACCGGTCTCGTGAGCTGGAGATAGCTGTGTACTGGAGAGACTGGCGCTCGCTGTGTGCTGTTAAGTTTTTACGGCTGGAAGACTTCCTGGACAACCAGCGTCATGGCATGTGCCTTTACCTGGAACCGCAAGGAACACTGTTTGCTGAgGTTACGTTTTTTAACCCAGTTATTGAGAGGCGACCTAAACTACAAAGGCAAAAGAAAATCTTCTCCAAACAGCAAGGTAAAACATTCCTGCGTGCCCCTCAGATGAACATTAACATCGCCACCTGGGGCAGATTGGTGAGAAGAGCCATTCCATCAATCAATACCTCATTCAGTCCTCAGGCGGCCGATCTAGGCTCAGCTTTGAGCCCTGAAACAGTACCCATCGGCCACCCAGACGCCCACTCCCTACCCAGCGACCCCACTGTGACCAAATTAGACTTTGACAAAACAGCCACCCCTCCCTCAAAACGGCACTCCATCGACGTCGAGATTGAGGAAACTGCATCACCGGATAAGATCCCAGAGGGAAAAGAGGTGCAGGATGCCCTAGCGACCTTTGACTTCCTGAACAATACAGTAGTTAAACCAGATTATGACAGTCTGGTTGAAAATGAGCAGGCTGACCTGGAACTGACTGCAGTTCAacgaaaaactaaaataagGGAAGAAGAGGAAGTCCAATTCAGTTTGACAGACTTCAAATGTGTAGCTGTTCTGGGGCGTGGCCACTTTGGAAAGGTTTTACTTTCCGAGTACAAGACCACTGGAGAAATGTTTGCCATTAAAGCTTTGAAGAAAGGCGACATCGTTGCAAGGGATGAAGTTGACAGCCTCATGTGCGAGAAGAGGATCTTTGAGACCGTGAACAGTGTTCGACATCCGTTCCTGGTGAACCTCTTCGCTTGTTTCCAGACCAAGGAGCATGTGTGTTTCGTCATGGAGTACGCAGCAGGAGGAGACCTGATGATGCACATTCATGCAGACGTGTTCTCTGAACCGCGCTCTGTTTTTTATGCTGCTTGTGTCGTCTTGGGACTGCAGTTTCTGCATGACCATAAAATAGTGTACAGGGATTTGAAGCTAGATAACCTCTTGCTAGACACCGAGGGATATGTCAAGATCGCAGATTTTGGTCTTTGCAAAGAAGGAATGGGCTTTAAAGATCGCACCAGTACTTTCTGTGGCACTCCTGAGTTCTTGGCACCGGAGGTTTTAACCGAGACGTCATACACGAGAGCAGTGGACTGGTGGGGTCTGGGAGTTCTCATCTTTGAGATGTTGGTTGGAGAGtccCCGTTCCCTGGTGATGACGAGGAGGAGGTGTTTGACAGTATTGTTAACGATGAAGTCCGCTATCCAAGGTTCCTCTCCACAGAAGCCATTTCTATAATGAGAAGGTTGTTGAGGAGGAATCCGGAGCGGCGCCTCGGAGCGGGGGAACGGGACGCGGAGGAAGTGAAGAGGCATCCTTTTTTCAGAAATATGGATTGGGACGCGCTGCTGGCAAAGAAGATCCGACCCCCGTTTTTGCCGACCATCAAAGGCCGCGAAGACGTTAGTAACTTTGACGACGAATTCACCTCAGAGGCACCGATATTGACTCCTCCTCGTGAGCCCAGGGTTCTGACCGTCGGCGAGCAGGAGATGTTTGCAGACTTTGACTACATCGCTGACTGGTGTTAACCCAGATCCTCATAAACCCTGTTCACACACGCTCAACACTGAACCAGCCGAACAACTCCCTCTCTGTAGGACACATCGGAAAAGAAACTGCTTTCCCTTTATGCTCTTATTGTGCCATTTTTAAAGGATCGACAATAACCTGTTTTAAGAATCAAGAATGAAGCGGTTGAGTTTTGGTAGCCCAATgtggcatcttttttttttttattgtcagagCACTGGGACACTGATTGGTGACCATTATAAACTTGTGAGGAATCAACAGGATCAACTGCAGCTTCCCTCTCCATTTTCCACACATTTTCTCtgcttttaaaagcttaaatGTGCCTACTGTCTTCAGATTTTGGGATTTTTAACACGCAACTGAAGAACTGAACCTGACCAAGACAGCAAATTGCAAATTCTTCACTCTGTAATAGGAGCATCTTTCAATACGAGCACGCTCAAAGAGAGTTCTCttgacttatttattttcttgtattcCCTTCAATGCCTTAAATTCTTTAAAGGGCTTCCAAACAATAACTATGAGGTACAGATAACCTACCAAAGCGTTTCTGCCAAATGTTCTTCTACCTATTTTattggaattattattattattaaaaaaaaaaaaaaaacctcggCCAAGAGCGCAGATTAAACGAACTTGAATTTTATCAAAGCAATATGACAGAAAGCTGCAATTTAATTGATCTTTTGAgagtttcttttcatttctataaAAGTATCCTTGTGCTCTAATCATCAAAAGAAATGTAAGTTAtagttttatactgtatttttagaatattagccatttggATCTGCTGTATGTTACGACAATGGttgtacacataaatatatatgaattgtaAGATTATCATTTTGGAGAGGGCAGCTCAAAGTTGAGAGCAATTCTGAACTTTTCATAtggaatgtaaaaatgtatattcatgaaaacaaacaaaaaaaatgtatatttttggcaTGTGGTCATGCCAAACTggctgtaatgttttattagttgacattttttttaaagaatatttgtAGTCCGTTTCAGATCTTTGTCATTTTACATCGATTTCTCACAATTTAGCCAATTTGTGGTTGTATATGTCAACATTAAACCACCTTTAATAGAAATGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0007155 cell adhesion biological_process
GO:0007165 signal transduction biological_process
GO:0005856 cytoskeleton cellular_component
GO:0030496 midbody cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0005634 nucleus cellular_component
GO:0030027 lamellipodium cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K23691 PKN2; serine/threonine-protein kinase N2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65869 lncRNA downstream 21074 11428125 ~ 11428763 (-) True G44501
TU65799 lncRNA downstream 207331 11242277 ~ 11242506 (-) True G44460
TU65798 lncRNA downstream 207805 11241637 ~ 11242032 (-) True G44459
TU65796 lncRNA downstream 210373 11239119 ~ 11239464 (-) True G44457
TU65791 lncRNA downstream 211639 11237962 ~ 11238198 (-) True G44452
TU66210 lncRNA upstream 668641 12149834 ~ 12437749 (-) False G44705
TU66214 lncRNA upstream 668641 12149834 ~ 12198838 (-) False G44705
TU66215 lncRNA upstream 668641 12149834 ~ 12437749 (-) True G44705
TU66216 lncRNA upstream 668641 12149834 ~ 12437749 (-) False G44705
TU66217 lncRNA upstream 668641 12149834 ~ 12217207 (-) False G44705
XM_043240951.1 mRNA downstream 12734 11428874 ~ 11437103 (-) True lrrc8c
XM_043242461.1 mRNA downstream 25044 11415268 ~ 11424793 (-) False lrrc8db
XM_043242463.1 mRNA downstream 25044 11415268 ~ 11424793 (-) True lrrc8db
XM_043242464.1 mRNA downstream 25360 11415268 ~ 11424477 (-) False lrrc8db
XM_043241285.1 mRNA downstream 35219 11410062 ~ 11414618 (-) True znf326
XM_043242736.1 mRNA upstream 214455 11695648 ~ 11708480 (-) False lmo4b
XM_043242735.1 mRNA upstream 214455 11695648 ~ 11708480 (-) False lmo4b
XM_043242733.1 mRNA upstream 214455 11695648 ~ 11708479 (-) True lmo4b
XM_043242737.1 mRNA upstream 253623 11734816 ~ 11786162 (-) True hs2st1b
XM_043241126.1 mRNA upstream 369065 11850258 ~ 11851231 (-) True sox14
XR_006251151.1 other downstream 380379 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other downstream 380380 11055035 ~ 11069457 (-) False brdt
TU65678 other downstream 733096 10710045 ~ 10716741 (-) True G44358
TU65385 other downstream 1304690 10141611 ~ 10145147 (-) False cd7al
TU65247 other downstream 1422202 10025578 ~ 10027635 (-) False c6h17orf67
unassigned_transcript_1087 other upstream 491287 11972480 ~ 11972551 (-) True trnag-ucc_1
unassigned_transcript_1088 other upstream 491516 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1090 other upstream 1489890 12971083 ~ 12971154 (-) True trnap-ugg_5
unassigned_transcript_1091 other upstream 1490285 12971478 ~ 12971549 (-) True trnap-cgg_1
unassigned_transcript_1092 other upstream 1939454 13420647 ~ 13420718 (-) True trnaa-cgc

Expression Profile