RNA id: XM_043241803.1


Basic Information

Item Value
RNA id XM_043241803.1
length 2092
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC122346915
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11442111 ~ 11447927 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTCTTATAGCGACTCTTCGATCTGATTGGTCCGCTTTAGAGGCGTAGGACGTTCACGTCAGGCCGAATCTGCTTCCTCCAAACACAAAATATCTATACTCTACCGCAACCAAtgaactgaaagaagtgttatGCCCGTGCCTGCAATGTTTTGAAATCTGCTCCACGCGTGTTACAAACCAACAGATTTAGAAATTTCACATCCTGCCAATACAAGATGGCATCCATGAAACATAAGAACGCGAAAAGGATAGAAGGTCTGGACAAGAATGTATGGGTGGCCTTTACATCAGTGGCAGCAGACCCTTCTATTGTCAATCTTGGACAGGGATACCCAGACATCCCTCCTCCTTCCTACGTGAAAGAGGGTCTGGCTCAGGCTGCGATGGTTGACAGGATAAATCAGTACACACGGGGCTTTGGCCATCCGAAACTGGTTAAAGCCCTGTCGATGGTATACGGAAGAGTCTACGGCCGCCAGCTCGATCCGTTTAAAGAGATCCTGGTGACCGTAGGTGGATACGGGTCTTTGTTCAGCACTATGCAGGCTCTGGTTGAGGAGGGAGATGAGGTCATCATTATAGAGCCTTTTTTTGACTGCTATGTTCCCATGGTgaagatggcaggagggaaaccGGTTTTGATACCTTTGCGATTGAAGTCTTCATCGGCAGCAACCAGTGTAAGCAGCGCGGACTGGGTTCTGGACCAGGACGAACTTGCTAGTAAATTCAACTCCAAGACCAAGGCTATCATAATCAACACTCCTAATAACCCCATCGGAAAAGTATTCAGTAGGAGTGAGCTGCAAGCTATTGCGGATCTCTGCATCAAACATGACACGCTGTGCTTCAGTGATGAGGTGTATGAATGGCTCGTGTATAAAGGCCACCGGCATGTAAAGATAGCAACCCTCCCTGGAATGTGGGACAGAACCATCACCATCGGCAGCGCAGGGAAAACGTTCAGCGTCACTGGATGGAAGcTGGGCTGGTCAGTCGGGCCTGAACACTTGATCAAACACCTCCAGACCGTTATGCAGAACAGCCTCTATACATGTCCGACCCCATTACAGGAGGCCGTTGGCCAGGGACTTCTTCGGGACTTTGAGCTGATGGGTAAACCCGACTGCTACTTCACCTCTCTGGCAGAAGAGCTGGAAGGGAAAAGGGACCGCATGGCAGCCATGTTGAGACAGACTGGCATGACTCCAGTGGTCCCAGAGGGAGGATACTTCATGATAGTGGATGTCACAGCACTCGATCAGGACTTGTCGCATATGGGAGATGATGAACCGTATGACTACAAGTTTGTAAAATGGATGATAAAAGAGAAGAAACTGGCTTCGATTCCTGTAACAGCTTTTGTGGGGGAAGATTCAGTAAAGCAGTTTGAGAAATACATTCGTTTGTGCTTTATTAAGCAAGAAAGCACCTTGGATGCAACAGAGGCCATCCTGAAGAGCTGGAACAAAGGCTGATTTCTGAAGCCAGATAATGCAGTGATACGCGTGTGGTACTGCTCAGATTAAACATATAACATACCTTTTATATTGCTGCATCCTCTTACTATAACCTAAACTGTGactgaagtgtttttaaagtttgcaGGATCAGTTATTTTTTTGAGGAAATTTAAAGGTACCTTGTGTCccaataatttctgaaggatactTAATATTGGAGTGATACGGCTCCTGAAAATTCATCACATGACTAAATTATACctttaaacatattatatttaaatagaaaactgatATTCTAAATCGAAATGGTTTAATTtcttcaaatgttttctttttttttgcttaggtCAGCATAATAGACttttcaaaaccattaaaaaaatcattcgaACCCCAAGCTTTTCAATAATAGTGTATAGAAATGTGTAAAAGGTGCTTTTATCTCTGGCCCTGGGTGATTGAAACAGCATGCTAGATGCAGGACCGTGTGTTATTTGTTTCGGCTTCGGATCTGAGGTCGGATTCCAACAGTGTGTGTGAAATTATTCAGTCCCGTGTTTTACTTTGCTTTTGCTGTCAATGACATTTAGACAGAATAAAATTCAAAGCTGTTGTGGATGAAA

Function

GO:

id name namespace
GO:0097052 L-kynurenine metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0016212 kynurenine-oxoglutarate transaminase activity molecular_function
GO:0047315 kynurenine-glyoxylate transaminase activity molecular_function

KEGG:

id description
K00816 CCBL; kynurenine---oxoglutarate transaminase / cysteine-S-conjugate beta-lyase / glutamine---phenylpyruvate transaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65838 lncRNA upstream 14057 11427845 ~ 11428830 (+) True G44483
TU65835 lncRNA upstream 14136 11427944 ~ 11428751 (+) False G44483
TU65831 lncRNA upstream 14179 11428124 ~ 11428708 (+) False G44483
TU65806 lncRNA upstream 194879 11247791 ~ 11248008 (+) True G44467
TU65804 lncRNA upstream 196893 11245685 ~ 11245994 (+) True G44465
TU65889 lncRNA downstream 193154 11641081 ~ 11643698 (+) True G44521
TU65890 lncRNA downstream 193154 11641081 ~ 11643698 (+) False G44521
XR_006251221.1 lncRNA downstream 241765 11689692 ~ 11705926 (+) True LOC122347449
TU65952 lncRNA downstream 331103 11779030 ~ 12264787 (+) False G44568
TU65951 lncRNA downstream 400485 11848412 ~ 12264787 (+) True G44568
XM_043241236.1 mRNA upstream 184320 11254609 ~ 11258567 (+) True barhl2
XM_043242069.1 mRNA upstream 241963 11179828 ~ 11200924 (+) False znf644b
XM_043241253.1 mRNA downstream 343743 11791670 ~ 11801796 (+) True dzip1l
XM_043241254.1 mRNA downstream 343743 11791670 ~ 11800752 (+) False dzip1l
XM_043241284.1 mRNA downstream 554220 12002147 ~ 12009882 (+) False LOC122346564
XM_043241283.1 mRNA downstream 554220 12002147 ~ 12009880 (+) False LOC122346564
XM_043241282.1 mRNA downstream 554222 12002149 ~ 12010539 (+) True LOC122346564
TU65822 other upstream 22557 11415273 ~ 11420330 (+) True G44478
TU65824 other upstream 22557 11415273 ~ 11420330 (+) False G44478
TU65546 other upstream 569309 10870409 ~ 10873578 (+) False LOC122347096
TU65338 other upstream 1319453 10122753 ~ 10123434 (+) False atad5b
XR_006251196.1 other upstream 1519730 9916052 ~ 9923157 (+) False pecam1b
unassigned_transcript_1089 other downstream 525044 11972971 ~ 11973044 (+) True trnai-aau_2
XR_006251144.1 other downstream 554221 12002148 ~ 12010109 (+) False LOC122346564
TU65993 other downstream 639472 12087399 ~ 12092455 (+) False G44588
TU66085 other downstream 1318256 12766183 ~ 12780920 (+) False crocc2
TU66063 other downstream 1632683 13080610 ~ 13082119 (+) False smx5

Expression Profile