RNA id: XM_043241808.1


Basic Information

Item Value
RNA id XM_043241808.1
length 838
RNA type mRNA
GC content 0.36
exon number 2
gene id chchd4b
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19620157 ~ 19621083 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAAAAGGTCTCATCTTGCCGGGTGGTAAGATAAATTGGGACTGTCCGTGTTTAGGAGGGATGGCAAGTGGAGTTTGTGGAGAGCAGTTTAAGACTGCATTCACCTGCTTCCACTTTAGTCAAGAAGAGGTGAAGGGTTCGGACTGTCTGGAGCAATTCAGTAGCATGCAGGAGTGTTTTCGTCAACATCCTGAAGTCTTTGCTCAAGAAGATAATCCTCAGAGTGCCAATCCTGGATCTGAAGCAGAACAAAAAGACTCCCCTTCCATCTCTGACTTCAACTCAAGCAAAGAGTCTGACCCTCCGCCCACTGAGACAAATGATATGCCCTCACAGCTGCCCGTAGCTAGTTAAAATTGGAGAACAACCAATTTCTTAttccacttttttgttttactttaatatattaatataaaatgagacATAAAGGAAACGGGGACACTACATGAATGCAAAAAGTAAGATTAAatggatatatatttttttaatcaacatgaCATCCTGAAATATATAATGTGATCTTAAACATGGCAAGACATTGAGTAAAAGGAATCATATATAGAATATAGGTTTTTGTTGAACTCTCTCACTTAAAGTGTGTTCtgaaaatttcatatttaaacattttgtgttctgtctgtcttttactcctttttcatattttctattttgttcaTACAGTCACCTTAATCCAAGTGTAACTTTGTTACATATTgatgtgtgaaagtgtgtgatTTAAAGTCTACAAAGATTAATGTATGTCATACATTGTACTTGAGTGAGTGCAAGTATTTGTGTGTAAAACGTaggatattttgaataaaagttataaactcaa

Function

GO: NA

KEGG:

id description
K17782 MIA40, CHCHD4; mitochondrial intermembrane space import and assembly protein 40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251216.1 lncRNA downstream 13101 19606362 ~ 19607056 (-) True LOC122347383
TU68953 lncRNA downstream 222427 19393477 ~ 19397730 (-) True G46540
TU68955 lncRNA downstream 222427 19393477 ~ 19397730 (-) False G46540
TU68954 lncRNA downstream 222752 19393477 ~ 19397405 (-) False G46540
TU68898 lncRNA downstream 377346 19212639 ~ 19242811 (-) True G46509
TU69118 lncRNA upstream 170559 19791642 ~ 19792328 (-) True G46658
TU69107 lncRNA upstream 180160 19801243 ~ 19802266 (-) True G46647
TU69142 lncRNA upstream 212987 19834070 ~ 19838047 (-) True G46673
TU69300 lncRNA upstream 220396 19841479 ~ 19842967 (-) False tomm6
TU69298 lncRNA upstream 220758 19841841 ~ 19842967 (-) True tomm6
XM_043242485.1 mRNA downstream 339 19613104 ~ 19619818 (-) True uroc1
XM_043242557.1 mRNA downstream 7703 19609800 ~ 19612454 (-) True si:dkey-197j19.5
XM_043242483.1 mRNA downstream 52115 19560562 ~ 19568042 (-) True sumf1
XM_043242162.1 mRNA downstream 64215 19553317 ~ 19555942 (-) True tsfm
XM_043242164.1 mRNA downstream 68300 19547029 ~ 19551857 (-) True myl6
XM_043241807.1 mRNA upstream 1472 19622555 ~ 19627477 (-) True sec61a1
XM_043241744.1 mRNA upstream 12096 19633179 ~ 19637946 (-) True ip6k2b
XM_043241091.1 mRNA upstream 47785 19668868 ~ 19676080 (-) True LOC122346467
XM_043242566.1 mRNA upstream 56676 19677759 ~ 19736497 (-) False col7a1
XM_043242565.1 mRNA upstream 56676 19677759 ~ 19736497 (-) False col7a1
TU68985 other downstream 64226 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 64226 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 470427 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 564026 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 902669 18714174 ~ 18717488 (-) True G46423
unassigned_transcript_1266 other upstream 45351 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 221961 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 475306 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 540357 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 908096 20529179 ~ 20531834 (-) True G46926

Expression Profile