RNA id: XM_043241810.1


Basic Information

Item Value
RNA id XM_043241810.1
length 3884
RNA type mRNA
GC content 0.46
exon number 27
gene id inpp5d
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13065838 ~ 13080046 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCACCCTTGTGTTTGTAGCAGCTTCCTTTTTGCAGCTTTCGCCCCTCtaacaggaagagagagaaacagcgAGCCTAGAGCCAGACAGAGCAGGAACGGCTATCAGTTCTAACAACGCCATGAAACAAATCGTGAGACTCTGAAGGTGGCCTCATGTTGATCTGCTCTTGAAAACTTGCCGGGGACAAAAAAACCTGGGTGTCTTCAGATTGAGGAAGGGAAAAGTCTTTGAAAAGGATGTTTTCTCACCAGCCATGGTACCATGGCAATATCACTCGGTCTACAGCAGAGGACCTCCTCTCCAAAGCAGGCAAGGATGGGAGCTTCCTCCTGCGGGACAGCGAATCTATACAGGGAGCTTATGCCCTCTGTGTTCTGTACCAAAACTGTGTGTATACCTACAGAATATTACCAAACGAGGATAAAAAACTATCAGTCCAGGCATCAGAAGGTGTTCCTATTCGGTTCTTCTCCGTGCTGCCAGATCTGGTGGAGGCGTATTATAAGGAGAACATGGGTCTGGTCACACATCTTCAGTATTCTGTGCAGAAAGAGGAGGAGCCGGAGGAGGAACCAGAGCCGGTTAGTTTGCCGCCTCAGTTGCCACCGAGGAATATTGCCAGTAACGAATGTAAAGACAGCCATAGTGACTCATCCAGAGGAACCGAGAGAGGAACAGAGCTTGCCCGCCTCTCCATCTCAGACACCTATATACAGCGTTTGCAGCAAATTGACATATCAAACCTACCAGAAGACCATCAGAAGTCCATCCAGGAGTATTTCTGCTCTTCTGTGTGTCTGGATGCAGAGCAGGTGCAGAATGGCAACCCGACTCTACCCCACTTTAAAAAGCTCACACTTAGCATTTGCAAAAACCTAAACAGTGAAATCGCCCGCACACTTCCGAGTCTTGAGGCACTGCAGAAAGTTTTGGATCAACCGCAGTCTCCTGGAGCTGGGAGGCTAAGGAGTCAGcctTGTGGAGATGCAAATCAGTCTGTGGCTTTTAAACTGGAGCAACTGACTAAGCTTATATATTCAATAGAAGACAAGACCAAGAATGCGGTGTTTGAATCTGTGGGATATGATGGAGGACACAGAAAGTCGCTTATTCCTCCTGTGATATTCGAAGTAAAATGCGACTCCCTTggtatttcaaacaaaatgtaCCTCAAAGTAGATGTCGAAGGTGGGAAGGTTTACTTCAAGAAGTCAAAAGATGGACCTGAggataaatattttgtacacaATAAAATCTTGCAGTTGGTGAAATCACAGAAGATTCACAACAGACTAGCGCTGGTGGTGGAGACAGAGAAGGAAAAAACTCAGCGCAAAGACTTTGTCTTTGACGACACAAAGaaaagagaAGGCTTCTGTCAGCTTCTGCAGCAGATGAAGAACAAGCACTCAGGAAAACCTGAGCCGGATATGATCACCATTTTTGTTGGCACCTGGAACATGGGAAACGCGAATCCACCGAACAACATCACTTCCTGGTTCCAGTCAAAGGGTCAGGGAAAAACCCACGATGACACGGCCAATCAAATCCCACATGACATCTACGTGATTGGGACACAGGAGGACCCGCTGGGAGAGAAGGAATGGATAGAAACAGTTAGAGGAGCCCTTAGAGATATAACCAACATTAGCTTCAAACAAATAGCTGCTCAGACGCTGTGGAGTATAAGGATTGTGGTTCTCGCCAAACCGGAACACGAGAACCGCTTCTCTCATGTCTTCTGTGACAGTGTTAAGACTGGCATAGCTAACGCTCTGGGGAATAAAGGAGCAGTGGGGGtgtcttttatgtttaataGAACCTCCTTTGGGTTTGTCAACAGTCACCTGACCTCAGGAAGCGAAAAGAAGCTGAGACGAAACCAGAACTATGTCAGCATCCTGCGTTTTCTGAATCTGGGAGATAAGAAAGTGAATCCCTTTGACATCACACATCGCTTCACACACCTCTTCTGGCTGGGGGATCTGAATTATAGGGTTGAATTACCATCACAGGAAGCCGAGAACATTGTATTGAAGATCAAACAGCAGCAGTATCAGGAACTCCTAACCAATGATCAGCTGAACAtagagaggaaagagaagaaGGTCTTCTTAGACTACGaggaggaggagataaCATTTGCTCCCACTTATCGTTTTGAGAGAGACACACGGGAGAGATATGCCTACACTAAAGCTAAAGCCACAGGGacaaaatacaACTTGCCTTCATGGTGCGATCGAGTGCTTCGCAAGTCCTACCCTATGGCGCACGTGGTTTGCAACTCATATGGATGCACTAATGACATCATGACAAGTGACCATTCCCCTGTATTTGCCACATTTGACGTTGGTGTGACTTCTCAGTTTGTCTCCAAAAATGATCTCTCAAAAGATGCTCAGGGAGCTATAAAAATCATGAACTGCGTGGCTGATCTTCATACTAAATCCAAAACCAAGTTCTTCATTGAGTACCACTCAAGCTGCTTGGAGAAATTTGTAAAGAGTCCAGAAGGAGAAAACCAAGAGTACAAAGATAGCCCGATAAAAGTACGGTTTAACGGACAAGTTGAGCTCACCCCCATCATTGCAGACCCAGAATACCTGCTTGATCAGCACATTCTGATCTGCATTAAATCTACAGACTGTGATGAGTCGTATGGCGAGGGTTGTGTGGCCCTGCGTTCTGCTGAAAGCTCTTACACTGAGTTCTGCATCAAACTCACACATCACGGTGAGTGCACAGGTCAGCTAACAGGTGGCATTCAACTTCCCAAATCTGACGGAAAACAGACAGAGAAGCTGTATGATTTCATCAAAGTCGGAGATGACCCAGGAACTGGTAAAGGCAAATCAGGAGACAATACCAAAATGTCTCCTTCGGTCCTCGCCACTGATATTAGTAACCCCAGTTATATGGGTTTAGGCTACAAGAGCAATAACCAGGCAGACAGGGGCCCCGGCAACATTATTTCTCAGAGAACGGGGCCATCCTCAAAAAGCATGACGCATGGCAATCTCTCCCCTAAAAAGAGTAGTTATGAGCATACTACATCCAGCCCAACTACAAAGACATCAAACCCTATATCCGAGGATGGGCAGCCTCCAGAGATGTTTGACAATCCTCTCTACGGCTCGATGAGTTCATCGCGAGGAAATAAAGACCACCTCCCTCCTCCAGAGGCTCACTTCTCCTTTCCCAAAACAGACCTCGATGTTGACCGCCAGCACCCTGTTCCGACCCCTCGCTTCCGCTCTTTCACCTGTTCAGAAACCAAACCCCAGTCACCATCAGTCACAAACATGAGCAGTAGTCTACTACCCCAGAACATCACCAAGAAGCCAGTGGTGCCTTCTCGCTCTGAAGGGGGCACGACTGGGCCTAACAGACCTCCGGTGCCTATGAAGTCTCGCCCCGGTCAGCCGCAAGAGTTTCAACCAAAGCCCAGAGACTACAGAGAAAGCTCTGAGCTTCCGTCTAAGTTACGCCAACAAACCAGACAAGGCCAACCCAAAGACGGGCATCATGAGACACAACAGTCACAGCTGAAGATGGGTCGgccattaaaatgattttctgctGAAGTATGGTGGCAGCAGAGCTGTCTGCGCTGGTGTGAGCTGATACTTGACACTCTGTAGTACTGGCCATTAGACATAAGCTTCTTTATCTCTGAGtactaaaatgaattaatgtataaatgatgaatattgattttaaaatgatgaatgttTCACAGTTTGAATGTCACTGCAGTAATACATCGATCAATCATTTCTGTTAGCTtctgtttaaacatttcatgttgcttaaaacattttcattagagAGAAGATTGAAGATTTCTAATCATATAATAAAACCAAGTGTTGTACAGTC

Function

GO: NA

KEGG:

id description
K03084 SHIP1, INPP5D; phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66087 lncRNA upstream 277667 12786119 ~ 12788171 (+) False crocc2
TU66075 lncRNA upstream 366261 12664820 ~ 12699577 (+) True G44622
TU66062 lncRNA upstream 394173 12564092 ~ 12671665 (+) True G44611
TU66058 lncRNA upstream 538948 12521773 ~ 12526890 (+) True LOC122347491
TU66052 lncRNA upstream 572196 12492953 ~ 12493642 (+) True G44606
TU66066 lncRNA downstream 3334 13083380 ~ 13084230 (+) True G44615
TU66120 lncRNA downstream 13810 13093856 ~ 13095910 (+) True G44640
XR_006251172.1 lncRNA downstream 21233 13101279 ~ 13103566 (+) True LOC122346816
XR_006251171.1 lncRNA downstream 22226 13102272 ~ 13103566 (+) False LOC122346816
TU66449 lncRNA downstream 233507 13313553 ~ 13313854 (+) True G44872
XM_043241608.1 mRNA upstream 1409 13058859 ~ 13064429 (+) True gpr17
XM_043241607.1 mRNA upstream 1409 13060546 ~ 13064429 (+) False gpr17
XM_043241601.1 mRNA upstream 7717 13039523 ~ 13058121 (+) True LOC122346752
XM_043241602.1 mRNA upstream 27558 13024547 ~ 13038280 (+) True sap130a
XM_043241811.1 mRNA downstream 519 13080565 ~ 13082119 (+) True smx5
XM_043241840.1 mRNA downstream 39149 13119195 ~ 13279180 (+) True LOC122346939
XM_043241841.1 mRNA downstream 47469 13127515 ~ 13279180 (+) False LOC122346939
XM_043242168.1 mRNA downstream 234011 13314057 ~ 13333574 (+) True tprg1
XM_043241158.1 mRNA downstream 270475 13350521 ~ 13385990 (+) True tp63
TU66085 other upstream 284918 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 973383 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 1055729 12002148 ~ 12010109 (+) False LOC122346564
unassigned_transcript_1089 other upstream 1092794 11972971 ~ 11973044 (+) True trnai-aau_2
TU65824 other upstream 1645508 11415273 ~ 11420330 (+) False G44478
TU66063 other downstream 564 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 28689 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 314183 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 892127 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 1000887 14080933 ~ 14081004 (+) True trnag-ucc_2

Expression Profile