RNA id: XM_043241812.1


Basic Information

Item Value
RNA id XM_043241812.1
length 3138
RNA type mRNA
GC content 0.43
exon number 4
gene id c1galt1b
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19244648 ~ 19250690 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGAGAGAAAGGTTtagttgaaaatatttatttttcttttttcgaaACAAAAGCGACACAATTTAGTGCAAAGGGTGCGTGTCACTGTTCACGAGACAAAGTTTGACAGGGAGTAGTTCGGAAAAGGGTTGGCTAATTATAATACGGAACTGAACCGCCCCCATATCGCTCGGCTTTTACTTGGTGAACAACATTCAGTTCACAGGAAGAGATAGGAAGCACGTTGCTAGTTGGATTGAAATAAATCCTGATATTACCCCCTAAAGTGTATTTGTTTGGGCCAGAAAATAGCCAGGAGATGATTTTGAAGCCGATGTATCTGATTGGGCTGTCAGATTTCTTGATTTAAGTTGAAAAGCACAGCTATATTGTTATGCTAGCGCTCTGAGTTGGACTGAAATGGCCTCGGTGCCGAATCCTGCAGTTTTTCTCACTTCTGTTATGGAGGAATTAAGCGGCCTGTCGCTCTGAGGTGAGAGTCTCTACGTACGGAGCTCGTGATGAAAGCTCTCGGCGCGCGCTCCGCGTTCTACGTGGGCTTTGTGGTGGGCACGTGCACCCTGTACGTGCTCCTGCGTCAGGTTGGGTTCACGCGGAATGTGGGGTCTGTTGAGTCCGAAGCCCAAGAGAAAAGCCTACTGGAGATGATTGAAGAGGAAAACAAGAACTGGAAGAAGGAGAGGTCGGCTCTCTTCAACCTCAATCATCCTCACCATACAGGTGAGGATGGCACTCTCGCTGACGCTCTCTATAAGCGCGTACGCATTCTGTGTTGGGTCATGACCGGCCCCAATAACCTCGAAAAGAAAGCTCGGCACGTGAAAGCTACATGGAGTCGTCACTGCAACATTGTGGTCTTCATAAGCTCTGTGGACGACCCTGATTTTCCTACGGTTGGCCTAAACACCAAGGAAGGTCGAGATCAGCTGTACTGGAAAACCATTCGTGCTTTTCACTACGTCATGGAAAAGCACGGCGATGAGGCAGACTGGTTCCTCAAAGCGGATGACGACACTTACGTGGTCGTTGACAACCTGCGCTGGATTCTTGCCAGCCACTCTCCAGAGGACCCGTTGTATTTTGGCCGGAGGTTTAAGCCGTATGTAAAACAGGGTTACATGAGTGGCGGCGCTGGTTACGTGCTTAGCAAAGAGGCTCTGAGGAGGTTTGTGGAGGGCTTTCGCACCAAAGTGTGCACTCACACTAGCTCCGTGGAGGACCTAGCTCTGGGTCAGTGTATGGAAAAGATAGGCGTCGTGGCAGGAGACTCCAGAGACACTTTAGAAAGAGAGACATTCCATCCTTTTGTACCAGAGTCCCATCTCACTGGCACATTTCCTAAGACCTTCTGGTATTGGAACTACTGTTATTACCCCATTGTGCAGGGCCCACAGTGTTGCTCAGACCTGGCTGTTTCTTTCCACTATGTGGATGCTTCACACATGTACCTGCTGGAATACTACACTTACCACTTGCGTGCCTTTGGCTACAAATACCGCTATCAGGCCCCTGAGCCCAGTGTCATACAAGACTTAAATGCTCCAGCCCCCAAAGTGGAAATCGGAGACATAGAGGAAAATCTGGGGGCAAAAGTACAGGAAGCAGAAAAGAATTCCCACAAACATAATGAAAAGTTATAGCAGATATTTGCGTAGGAATTTTTACAAGTAACGTTTAAAATCTTCTTCCAAGTTTTTGGGATGGCTTTGTTTTTTGGATAATGTCTTAAAATATCTGTCTGTATTGTGCCACAGAAATGTGTGCATAACATGTTTGCGTGATTTAATGAACTGGTACATTTGGGCGTGTTCCTCATAACAATGCAATTGTATGTGAATGTTTTAATTGGACAGTGCAGAATTGTATGAAATGAAGGTTTGGACTTGTAGAGCGAGTATGTGGTTCTTCGGGGGTTGAGTGTGAGGAGCCTGCcttaatagtataataataacattggGTAATATTTTGGGGTGGGAAGCAAGGATGCCTCTGCATTCGTTATACTttgtgttaatttaaaaaaaaaaaaaagttctttatgTAAAAATGGGTTTGCTCTGCATTGTCGTGATAAACACACCACCATTTATGATTTAACGGCAATGCCATAAAAAAGGGGCCCTGTTTTTCCTCTTATATTCTCATTCCTTTGAATTAGTGCCTCTTCCCTGATCCAGAAAAATCATGCATTTCCAGCAAACTTTAAAGTGTTTTCTCTACACAGTGTACAAAATCTTTGCCAAAGTTGAACATGCACAATTTACTTTGACTAAGATTACTTCgaaataaatattaaccagGGCGTAGTCCTTTAGCTGAcaccaaaacagcatattaCGCTTCTCCGAAaggggttagttcacccaaaaataaaagttgtcaTCGTTTACTCTTCCCAAAGTtgcttcatatatattttattagaagaTATTACGCAGAATGTTCATTCTGGTAGCCATTTACTTgtatagaaaaagaaaatggaaaacaaaatggaGGTCAATGAATGACTACCAGCAATTGttttgttcttcaaaatatcttcctttgcgtTCATTGAAacagtttttgggtgaaccaccTCATTCGCAAGAATACGGATTAGTTCGATCCTGTTGGCTGGCCCAATAGTTCATGAGTGCCTGGGAAAGAAGTAAAGGTAGCAAGGTAGATAAGACGGTGTAagtacactgtttttttttttctccatgctAATGGGAATTGAGGTCTTGTAGACGACTGGTGTAGTGTAACACGCTGTGAAGCAATGCAGCTTGTGAGTTACTGAAACTGACCgcataatgctttatttaattgtttgtagagtgaaggtttttgtttatctgGGATTGAATGTCTAGGTTTTGCTTCAGTTCACAATGCAACTCCTATTGCGCGTGAGATTAGGCATGTTGATTTTGAAGTTGATATAGCTGCTTGTCCAGGGTGGTGAAATTGATTCCGTTTCTCGTGGTGTGTGCTTTATGTCTGAATTactcaattatttgtttgtatttgctgtatttaaagggatagtacgatcaaaaatgaaagctctatcaattactcaccctcatgtcgttccaaacctgacTATATTTTCAAGACAAATAAAGATATGTATTCTTTTTTGATGA

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0001822 kidney development biological_process
GO:0016266 O-glycan processing biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016263 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity molecular_function

KEGG:

id description
K00731 C1GALT1; glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68898 lncRNA downstream 1837 19212639 ~ 19242811 (-) True G46509
XR_006251202.1 lncRNA downstream 92954 19149746 ~ 19151694 (-) True LOC122347223
TU68847 lncRNA downstream 195812 19044704 ~ 19048836 (-) True G46477
TU68845 lncRNA downstream 195902 19044628 ~ 19048746 (-) False G46477
TU68850 lncRNA downstream 195902 19044704 ~ 19048746 (-) False G46477
TU68953 lncRNA upstream 142787 19393477 ~ 19397730 (-) True G46540
TU68954 lncRNA upstream 142787 19393477 ~ 19397405 (-) False G46540
TU68955 lncRNA upstream 142787 19393477 ~ 19397730 (-) False G46540
XR_006251216.1 lncRNA upstream 355672 19606362 ~ 19607056 (-) True LOC122347383
TU69118 lncRNA upstream 540952 19791642 ~ 19792328 (-) True G46658
XM_043242852.1 mRNA downstream 7831 19233271 ~ 19236817 (-) True apof
XM_043242851.1 mRNA downstream 7832 19233271 ~ 19236816 (-) False apof
XM_043242849.1 mRNA downstream 11849 19223125 ~ 19232799 (-) False stat2
XM_043242848.1 mRNA downstream 11850 19221293 ~ 19232798 (-) True stat2
XM_043242850.1 mRNA downstream 13914 19221293 ~ 19230734 (-) False stat2
XM_043242290.1 mRNA upstream 843 19251533 ~ 19260149 (-) False os9
XM_043242289.1 mRNA upstream 843 19251533 ~ 19260149 (-) True os9
XM_043242366.1 mRNA upstream 23427 19274117 ~ 19286211 (-) False arhgef25b
XM_043242364.1 mRNA upstream 23427 19274117 ~ 19286211 (-) True arhgef25b
XM_043241839.1 mRNA upstream 47201 19297891 ~ 19302750 (-) True krt4
XR_006251201.1 other downstream 94918 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 188517 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 527160 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 599514 18644306 ~ 18645134 (-) True G46420
XR_006251187.1 other downstream 1470541 17743715 ~ 17774107 (-) True opa1
TU68985 other upstream 302629 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 302629 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 415744 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 592354 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 845699 20096389 ~ 20102458 (-) False srsf3a

Expression Profile