RNA id: XM_043241821.1


Basic Information

Item Value
RNA id XM_043241821.1
length 4917
RNA type mRNA
GC content 0.44
exon number 21
gene id usp13
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13697792 ~ 13722434 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGGTCCACGAGGAATGTCGGGTCCGTGTGATTTAAAAATAGCCCGATCTGATCTTCAGCCTGACACGCTGCTCCGGCGAGGCTCATAGTGGTGCGAGCAGCAGGAATGTGAAGATGGCCACAGATCTGGGAGAGCTACTGGTCCCGTACATGCCCACCATTAGAGTGCCGAGGACGGGAGACAGGGTTTTCAAGAGCGAATGCGCGTTTTCCTACGACTCTCCCGAATCGGAGGGaggtctgtatgtgtgtatgaacTCATTCCTGGGTTTCGGAAGAGAACATGTGGAGAGACATTACCGTAAGACTGGACAGAGTGTGTACATGCACTTAAAACGACATGTGAAAGAGAAAGCCACAGGTGCTGCCGGGGGTGCCATACCAAGAAGAAGGAATGGAAAAGTCTTTTTAGATTTAGAGCTTAACCGTGATTTTAACGGAGATGATTATGAGTATGAAGATGAAGCCAAGCTTGTCATATTTCCAGACCACTTTGAGATCCCTTTACCAAATATTGAGGAGTTGCCCGCACTGGTGACAATAGCCTGTGATGCCGTCCTCAATGCTTTATCTCCATACAAAAAGCAGGAGTCTGACTCGTGGGAAGAGGAGATTCAAGTATCTAGACATGCCAGAAGTCTCAGACAGCAGGAGAATGGGGTTCGAATTCCTCCCAGTGGCTGGAAGTGCACCAAGTGTGAAATGCGAGAGAACCTGTGGCTAAACCTGACGGATGGCTCTGTCCTCTGTGGGAAGTGGTTCTTTGATGGGAGCGGAGGGAACGGACATGCCCTTGAGCACTACAAAGAAACCAACTTCCCTCTGGCAGTTAAACTCGACACAATCACCCCAGATGGAGCAGACGTTTACTCTTTTGATGAAGAAGAAGCAGTGCTTGATCCTCACATATCAGAACATTTGTTACACTTTGGAATAGATATGTTGCAAATGCAAAGGACAGAGAATGGCCATCATACAGACAACCACGTCCAGCCACGTGTGAGTGACTGGGAAGTGATTCAGGAGGCGGGTCTAAAACTAAAGCCTGTCTATGGCTCAGGATATACAGGCATTAAAAACTTGGGCAACAGCTGCTACCTGAGCACCACTATGCAAGTGCTTTTTAGTATTCCAGAGTTCCAGAGAGCGTATGTTGGGAACTTACAGAGAATATTTGACTACTCGCCCCTTGATCCAACTCAGGATTTCAACACACAGATAGCGAAACTCGGTCATGGACTTCTCTCAGGCCAGTACTCAAAACCTCCAATGAAATCAGAACTTATTGAACAGcagcagcaaagAGGGATTTCACCTAAGATGTTCAAAGCTCTGGTCAGTAAAGGACATCTAGAGTTCTCCTCGAACCGGCAACAAGATGCTCACGAATTCTTGCTGCACTTAATTAACCTGGTAGAGAGGAACAGTTCAGGCTCAGAGAACCCCAGCGATGTGTTCCGCTTCTTAGTTGAGGAACGAGTGCAGTGCTGTCAGACACAGAAGGTGCGCTACACACAGCGGGTGGACTACCTTATGCAGCTTCCTGTACCTTTAGAGGCAGCCAGCAACAGAGAGGAGTTAATAGCATATGAGAGTAAGCGGAAGGAAGCTGAGGAGAACTTGCGGCCCGCTCCAGAGCCGGTGAGAGCCCGAATCCCCTTCACTGCCTGTCTGCAAGCCTTCACTGAGCCTGACAATGTTCCAGACTTCTGGAGCTCTGCGCTGCAAGCCAAGTCAGCCGGGGTGAAGACTTCTCGTTTCGCATCCTTCCCAGAGTACATGGTCGTACAAATAAAGAAGTTCACATTTGGGGTCGATTGGGTGCCCAAAAAGTTAGATGTTTCTGTAGATGTACCTGATTTCCTGGACTTGAATCGCCTCCGGGCCACAGGGCTACAGGCTGGAGAAGAGGAGTTGCCTGACCTTACACCTCCCATTGTCATTCCTGAAGACACCAGAGACAGTACAACAAACAACTCTTTGGAATCTCCAGAAATAGATGAATCATCCGTGATGCAGCTGGCAGAGATGGGTTTCCCTCTGGAAGCCTGTCGGAAAGCAGTGTACTACACTGGGAATATGGGAGCAGAGATGGCCTTTAACTGGATAATAGCACACATGGAAGAGCCAGATTTTGCAGAGCCTCTGGCAGTTCCCTCTTACATGGAAGCAGACCTGCCCAGCCCCAGCCTCCCTACAACCAGTGCACTGGACAGCCAGCCTCCAGAAGAGAGCATCTCCATCCTCACCTCCATGGGCTTCCCCAGACATCACACAATCCAGGCTCTCAAAGCCTCGAACAACAACTTGGAGCGCGCGTTTGACTGGATATTCACACACCCAGACTGTGAGGATGAGAGCGAGGCTATGTCAGACACGGCAGACACAGAACCGAATGATAACATCTTCTCAAACGCCAATGCCCACAGCGACTCCTCACTGTCTCCAGATCAGGACCTGTCCAGCCCCCGTGTCAGAGACGGACCCGGACgttaCGAACTGTTTGCCTTCATCAGTCACATGGGAGCATCCACAATGTCTGGTCATTATGTGTGTCATATCAAAAAAGAGGGCAGATGGCTGATTTACAACGACCACAAAGTATGTTTGTCAGAGAGGCCCCCTAAAGACTTGGGCTACATGTACTTTTACCGGCGCCTGTCAAGCTGCTAGATCTGGACCTTCATAACATTATGCACAGCCGTTAGGCCAGAGAGGTGTGTGGGGCACCACTGACACTGCTGGAAACTAGGGAAGCATTTACATCTGTGAGACCGAGAGAGGAcctctcagtccctgccaagaCCCGCACAGACGCTCAGCAGGGAAACCAACGTGTGGCATCcgagttttgtttatttgtttgtctcgTGTCCGCTTTAAAGGTACAGTGGGGTGCGTGCAATTTTAGGTATGCAGATTATTTTCCTAATATATTCTCAAATGATTTGTTATATTTCTGTTTGAATAGTTTAAGCTCCCGTGCCAGTATTTTCCAGATGTActtcttttgaaaatataatgttGTGCCTGCATTTACAAATGCTTATACTGCCATCTCAGCAGAATGTACTCGCTGCAGTTCATTTGGTATCCTTTGGGTTTTATCTCAAAAATCTATCAGAATGGATTTCAAATACAGATCATGTTAATTGGAGTTTGTGGGGGCTGCAGTCAATACAAAACATAATgtgattgtttcatttttttaatcacgcccatacaagaaaaaaagtgttagaaGGCATGTTTATTGAAGTATTGGACTACGCTTTCTGTTATTTCTGATATTTATTCTAGCATTCAGACTGATCCATGTATGTGGCACCATCAAATTGTTCTTTATCCCAAAAAGGGATAGGAAAATTTCATGAAAATTGATGTCCAAAATGTTGTTTCATTGCATCATTTGATCACCAAGGGAACAGTCTGAAgggaatgggtgccatcagaatgaaaaaaaaaaacattgcaataatccaaaagtaatccacacaactccagtACATCGATTAACATTTTGGGAAATgaaaagatgcatgtttgtaagaaacacaCACTTTGCCAAATGTTAACTGTTGGGCTCTAgatattctgacggcacccattcactgcagaggatccattgtttagaaagtgatgcaatgctaaatttctccaaatccgtttCAACGAAAAAACTAATTCATCTACATTGTAGATAGCCTGAGgataagtacattttcattttttagtgtACTTTTCCTTTAATGAAGGTTTATTCTACCCAGCAGCACATTTGTTCACTTTCCAAACCTTTAGGCAGAAGTGAGCTTGtactttaatgatttttgtttaaatttaagaACACTGAGCCTCATTTATCGGCATGCCTTGAAGAATATTTCATTTGTACAATATCATCGCATTCAACTTTATGATAGCTTTCAGTCAGTCTGTGATAGCTGAGCAGAAAATGCAGCAATATCACATATTCATGCAATGTTCAAGTGCTTTACTTTGATCATATCTGAAGCCGTTTAAAGACCGGGGTGCATTTGAAATCGTTCCGTTTCACTGACTTCCAGTCTCAAAgaatgtaaaactatttttatccCGTACCTAAGCAATATGTGATGACATACTGCATATAAAGCTGAATTACATGCAGTGTCATACATGAACTATCTCAGATACATGTACGTATTGGTGCTCAGTGTTACCAAATCTCAAGCTTTCAAAAGCTTTACAGCATATCTGACAAACTTGGCTCCGCCTACATCACCATTTACCAATTTCaaacctttttcatttatttgctgaaaatgggctgaattaaaacgtaaaatgtattgttttatgacATAATCTCACTCAGGCTGAGGTGGGGCCTGTTCATCTCGATTTATTTCAACTACACGGTTGTAGATTGTACGCTGTCATGTTTATTTCCGTTGTGCGCTACCTTTTATGTTGGGAGTTCAGCGTCTTTGTTCCTTCACCTCGTGTTGTGCATGTGTCTTATCCATCCGAGgttctctcgctctttctctccttctctttcttacTTTGAATGAATATTCATACCCATTTCCTTCTGCTTCTGTCTCTTATATTGATGCTTTCTTTTAGGGTGTGAAAGTGGATGCTTTTACCCCACCTTTTTCAAACATgccttgatttatttttttcagtatgtgCACTAAAAACCAGAGGTTAGTCAGttgacattttgcaatatattattGATCTTTACCGGGTTCTGTTTTTCATGGAACTGAAGGTCAAGtggtatgtttttattgtttatctatctttttttttttttttttgcaaaaaagtgTGCCAATTCTGTAGTTACTTTACAAACTTGCCCACTtgtttgttataatttttttttttttaatggattttctGATCCATACATTGTTTAGAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0008283 cell population proliferation biological_process
GO:0010506 regulation of autophagy biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0050821 protein stabilization biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008242 omega peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66600 lncRNA upstream 35695 13661812 ~ 13662097 (+) True G44998
XR_006251162.1 lncRNA upstream 40026 13656192 ~ 13657766 (+) True LOC122346715
TU66598 lncRNA upstream 46909 13650115 ~ 13650883 (+) True G44997
TU66580 lncRNA upstream 103191 13589986 ~ 13594601 (+) False LOC122346508
XR_006251135.1 lncRNA upstream 103255 13589885 ~ 13594537 (+) True LOC122346508
TU66675 lncRNA downstream 114173 13836607 ~ 13836819 (+) True G45056
TU66694 lncRNA downstream 137821 13860255 ~ 13860609 (+) True G45070
TU66717 lncRNA downstream 270311 13992745 ~ 13996966 (+) True G45075
TU66727 lncRNA downstream 294001 14016435 ~ 14128344 (+) True G45084
XR_006251242.1 lncRNA downstream 406913 14129347 ~ 14131078 (+) True LOC122347615
XM_043241043.1 mRNA upstream 1003 13693377 ~ 13696789 (+) True ndufb5
XM_043242699.1 mRNA upstream 6842 13684429 ~ 13690950 (+) True actl6a
XM_043241552.1 mRNA upstream 42636 13652396 ~ 13655156 (+) True si:ch211-201h21.5
XM_043241547.1 mRNA upstream 53519 13639006 ~ 13644273 (+) False zgc:172121
XM_043242544.1 mRNA downstream 91482 13813916 ~ 13819919 (+) True pde6d
XM_043242542.1 mRNA downstream 97685 13820119 ~ 13823792 (+) True phb2b
XM_043242643.1 mRNA downstream 131808 13854242 ~ 13857900 (+) True ptmaa
XM_043242793.1 mRNA downstream 145443 13867877 ~ 13971903 (+) True dlg1a
XM_043242794.1 mRNA downstream 145443 13867877 ~ 13971903 (+) False dlg1a
TU66465 other upstream 287880 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 588426 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 615673 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 916872 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1605337 12087399 ~ 12092455 (+) False G44588
XR_006251224.1 other downstream 249739 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 358499 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 1513777 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1636427 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 1842547 15564981 ~ 15566668 (+) True G45448

Expression Profile