RNA id: XM_043241838.1


Basic Information

Item Value
RNA id XM_043241838.1
length 1977
RNA type mRNA
GC content 0.41
exon number 8
gene id si:dkey-195m11.11
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19292646 ~ 19297765 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTAGTTAATGTTACTGTTGCACCATTTGgaaatttcaaatgttttgatgtGGATTTAAGCACTTTTCATTCTTACTGTGTCACAGTTTCAGTTGCTGGTTTCAAGATGATTATCCACAACACAGGAGTGCTATCTGTGGTGTGCTGGCTAATGCATGTGAGAGAAACGGTGTCTCAGGCATATGCTCCAGCGCCTACACTCAGGTATGAttttggagaaaaagaaaataatgagcTAAACTACATAGTAAATGTTGTTTGTGCTACCCCTCGGAGTGCTTCATATCCCGTAACTGTGTCTGTGGGCAAGTTGGAAAGCCCCTCACAGACCCCAGAAACCACAGAAGCCTGGGTGACCTCTAATGTCGTCAAACAAGCGGAGTCCACATATTTTACGATCCCTGCAACAGCCAAGTTTGAAGGAAAAATTGTGTGCTGGTACAAATCCACTCAGACTGATTCAAAGAATCCCTATTCTGCATTAAGCAACAATATTACCTTAGTCGTATCATCCCTCACTTCTCCCACAGTGACCGTGCACccaaatgtatttatgattgGTCAAAATTACACTGTACAATGTGACTCAGCCTACAGCCTCCCAAACATCACACTGAGTCTGTATTACCGCCCTGTCACCCCTGGATCCAACTGGACTTTGGTTGGTTCACTATTTCTCACGAATAACACTTCAATCATTTTAAGACAGACTAATGCCGTTGAACCAGTAGAATTCGCCTGCTCAATGGAGATGATGTACAATGGAAAAGTCTTACATTCATCTCTGTCTAAAAGCGAGCAAGCCATCCCAGAAAAGTTTCTGGTTCGACTCTGGGAACAGTCACGGGGAGAGAGCTGTCTAGGATTTCTGGATGTCACAATCAAAGGGAAGTGGGAACCTGTTTGTCAGAAGGAAGTCGATACCGATGCAGATTCGTCTTCCGCTGCCGCCACGGCTGAAGTGGTATGCAGGCAACTGGGCTGTGGGTCTGTGCTGAAGTGGGATAGGCTTTGGGATGACAAACGGCTGTTTGCAACAACAGTCGGGGGCATCAGATGCagtgggaaagaaaaaaagatcatgGATTGTCCAGTGAAGGAAATTGGAGATTGCAAACAGAGAGGCATGCTCTATATAATTTGCTCAGATGCATTGCCCCGACCAGAACTGTCTGTGGATATGTCTGTTTCTCCTAACTCCAGAATGTATGTCACGGACAAACAAGATGTGAAAATCTCCTGCTCTACCTACTCAACTTATTTAAAATCAGTAGACTATGGGTACACAGTGCTTAAAAAGGATGGTGTTCATGTGACTGAAACGTACAGCAAACCAGGCTCAACTGTGTCTTTCACACAGCATGCCCCAGTGCCTGAAGGAGAGTATGAATGTTTTTTCCATCTTACGTCTTCAAAAATTAAACTGTCTCAACCAAGCAATTCAGTCTTCATTTACATATACAATCCTCCAGATCCAGTGCCAATTGTAGCAGGTGTTCTCACAACTGCTTTTGGGTTAGCAATTCtagtgtatatttgtatatttagaaCCGCCACAGAAGAGGTACAGGCCAATGAATTTCCACAGACCAATACTGAAAATCCAGATAACAATGCCAGCTACCCACCACAGCAACTTGAAGGCAAAGAAGTTTAATTTATGGCTGAAAATATGTTTAACCATATGCTTCAACATGTTAACATGTCATCTGGACAACATTCCACATGAAATATAAGGTTTGATAAATCTTGAAGAAAAGACAATCAATGCTTTTTGCAATTCTGTACAATAGAGAATATTTAGATATCAAagttataatgttaaaaaacgaACTAACCTAGTtttacaaaagcattaaaaataagagtCTGTTAGTATACTAGTTAGTCTGCAAGATGTTCAATATAAAGTGAGTCAACTTTACGGTGGAGTGAATCAAACTTCattctaattaataaatgtatctgTTTTACCTA

Function

GO: NA

KEGG:

id description
ko00601 Glycosphingolipid biosynthesis - lacto and neolacto series

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68591 lncRNA upstream 62205 19229796 ~ 19230441 (+) True G46305
TU68527 lncRNA upstream 69360 19221292 ~ 19223286 (+) True G46265
TU68538 lncRNA upstream 159043 19118052 ~ 19133603 (+) True G46272
TU68541 lncRNA upstream 236515 19055216 ~ 19056131 (+) True G46275
TU68523 lncRNA upstream 296226 18995338 ~ 18996420 (+) True G46261
TU68574 lncRNA downstream 2630 19300395 ~ 19303013 (+) True G46299
TU68647 lncRNA downstream 87841 19385606 ~ 19454365 (+) False G46347
TU68650 lncRNA downstream 87841 19385606 ~ 19454365 (+) False G46347
TU68659 lncRNA downstream 106700 19404465 ~ 19407876 (+) True G46353
TU68661 lncRNA downstream 110983 19408748 ~ 19409488 (+) True G46355
XM_043242529.1 mRNA upstream 1779 19288427 ~ 19290867 (+) True ankrd33ab
XM_043242367.1 mRNA upstream 17383 19261579 ~ 19275263 (+) True b4galnt1b
XM_043242368.1 mRNA upstream 17383 19261579 ~ 19275263 (+) False b4galnt1b
XM_043241813.1 mRNA upstream 49217 19240813 ~ 19243429 (+) True tac3b
XM_043241007.1 mRNA upstream 73620 19215804 ~ 19219026 (+) True gpr84
XM_043242578.1 mRNA downstream 30754 19328519 ~ 19332524 (+) True krt18b
XM_043241902.1 mRNA downstream 36642 19334407 ~ 19344958 (+) True si:dkey-195m11.8
XM_043241082.1 mRNA downstream 95687 19393452 ~ 19395355 (+) True LOC122346460
XM_043241083.1 mRNA downstream 98872 19396637 ~ 19398441 (+) True LOC122346461
XM_043241084.1 mRNA downstream 98898 19396663 ~ 19398441 (+) False LOC122346461
unassigned_transcript_1265 other upstream 140473 19152102 ~ 19152173 (+) True trnaq-uug_14
TU68431 other upstream 704199 18577278 ~ 18588447 (+) False atp10a
XR_006251243.1 other upstream 1127692 18156655 ~ 18164954 (+) False tubgcp5
TU68129 other upstream 1295929 17995191 ~ 17996717 (+) True G46022
TU67943 other upstream 2105338 17186708 ~ 17187308 (+) True G45894
TU69007 other downstream 282724 19580489 ~ 19581824 (+) False itpr1a
TU69008 other downstream 283431 19581196 ~ 19581824 (+) False itpr1a
TU69089 other downstream 486412 19784177 ~ 19786297 (+) True ghrl
TU69241 other downstream 789326 20087091 ~ 20095641 (+) True G46742
TU69535 other downstream 1334231 20631996 ~ 20637951 (+) False LOC122346811

Expression Profile