RNA id: XM_043241840.1


Basic Information

Item Value
RNA id XM_043241840.1
length 5068
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC122346939
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13119195 ~ 13279180 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgccgGCTGGAATTTCGCCCTCTGACGTCACTGCCTGTTACTCTCCCAGATTTGGGAAAAAGAAGTTTCACTTTAAGTGGGGATTTGAAACTCTGTGATTCTTAGAAAGCGAGGTCTGTGATCATCTGGTGATTTGTTTTTCCTCCAGAAAACAagattTCTTGACTCCAGAAAGATGTGGGGTGGCCATAATGATGGTGACCAGCAAGGTCATGTGAGTGCACGAATGGAGACCAGCTTACCCATGGGTACCACCAGTATTTCTGTATCCCAGCAACAGGCTCCTAAGAAGTTTGCTCCTGTTGTGGCTCCCAAGCCCAAGTTCAACCCCTATAAACAACTCGGGGATGCTACACACGAGGGAGCTGgaGATTATCCCCCACCTCCTCCACCTGTCGTTGACACCAGCGGGCTCCCGTCTCCATCCAGCTTCCCACCTCCTCCACCCATGGATGAGGCCTCCCTTGGCTTTCAGatAAAAGGACCTGAGAAAACTCTAGAAGAAAGGCGTTCTAGTCTGGATGCTGAGATCGACTCCTTGACCAGCATTCTGGCCGACCTAGAGAGCAGCTCACCGTACAAACCTCGGACACCGCAGAATTCTGCCAGCCCAGCTGCAGCAGGCTCCAACGCCCCTGTTACAGGCTATCGGCGCATGGTCATCCCAAATCAACCACCTCTAACAGCCACCAAGAAATCCACCCCGAAGCCACAGGCCTCCCCTACTGCCCCTACTCCAGCTTCAACTTCTCCACGACCCCAATACCAGTCCGCTCCCCAGCCTGTGCCTGCATCCTACACCACTGCCTCTACTCCGAGTCAGCCTACCTTCAATGTTCAGGTCAGGGCCGCCCACCCCGCCCCCCAGCAGCAGCCGGTCCGTGGTCCAGCGCAGGTACAGTACATGCCGGCTCAACCCAGAGGCCCTGATTTTGCATACGGGCCTCCGCAGCCGGGATTCTGCCCTGCTCCCTCTGGAGGCTTCCAGGACCAGCACTACGGTGGAGCTCCTGCTTATGGTGGTCAGAACACATGGAGAGCAGAGCCAAGTCATCATTCCACTCCTCCACCCAACCAAGGGTATCAGCCCACTCCCCCGGAAAAAACCTACATCACTGATCCACCTGCCAGCCTGGCACCCTTCGGCGGTGGATCTTCTGCTCCTCATAAGGGTCGTCCCGAGGAGGAACTGGACCGTCTGACGAAGAAGATGCTGTACGACATGGACAACCCCCCCTCTGAGGAGTATTTTGGTCGCTGCGCAAGCTGTGGGGAGAACGTGGTCGGCGAGGGGACGGGTTGCACCGCCATGGACCAGGTCTTCCATGTGGACTGCTTCATCTGCATGACCTGCGGCTCTAAGCTCAGAGGGAAGCCCTTTTATGCCGTGGAGAAGAAGGCCTACTGCGAACCCTGCTATATCAACACCCTGGAGACTTGCAACATATGTAGTAAGCCCATAATGGAGCGTATCCTGCGGGCGACCGGGAAGGCCTATCACCCCCAGTGCTTCACCTGTGTGGTCTGCCATCGGAGTCTGGACGGCATTCCCTTTACCGTGGATGCCTCCAACCACATCCACTGCATCGAAGACTTTCACAAGAAATTTGCTCCTCGTTGCTCTGTGTGTAAAGAGCCCATCATGCCAGCACCTGGTCAGGAGGAGACTGTGCGTATTGTGGCTTTAGACCGTGACTTCCATGTGCAGTGTTATCGCTGTGAGGACTGTGGCTGTCTTCTCTCTGAGGGAGACAACCAGGGTTGCTACCCTCTGGATGGCCACGTTCTCTGCAAAAACTGCAACACCAGTCGTATCCAGGCCCTCACTGCCAAGGCTACGACCGACCTCTGAGTAACGCGCATATCTGCATGCAGGTCCCTAGTATCCCTGCGTTCGTCAAATTCTGAGAAACACCATATCCTGTCACATCActgcacacaaatatttatgCTCAGACAAATGCACATGTACACATAAAGCTGTCATTCCACTTAAGGGGCCACGACTTATCTTGTCGCTCATGCACCTCCGCACACTGTGCCTTGTATTAAAATTGCACTCATTTATTCTGTCCAGTCGTTTTTATTAGCAGATGCGATATTCACCAGGGCCCACTACATCTGCTTGTAAACACCTAAACGAAGTaggccttaaaataaaaaactagaCTGTTAGATTCTAACTGATGTTCAAAGAGCTGTTCGGGTGAGACGCGGAGCATTAAGAAAACCCTCATAGAACATCATAGAATCTACCTCTAAAAAGGGACCACGCTGTCCAAACGCTATGCATTCCAGTACGTATCCAACCTACacctttcattttattttccagctaAGTTACACATGAAAGCACAGaagcagacattttttttgcagtgactTTATCGCATAACGcagatacaaaaataattgGACGTTTTCATTACGCATGATTCCGGCTTGTTCTTTACGCATCattcaaacatatttttgaatcTTCTTATAGCGGCTGTGAAATTGGGGGTTTCGTGTTTGCTAAGGTACACAAGTTGGTATACAAAGACCTGGACTCGTGCATCACACCTGCTTCATCGGTATGTTTTTGTGAGCATGCCGTGCAGGTGTATATTTGCGAATTCATGTCCTTTCGATTTACATTTCTGAATTTACCCTTTGAGTGAAAGTTACCAAAGAGCTACATTTACTTTCTCTGGGACAGCgtgtttgtattattgtatgCTTATGAAATCTAATGGGAAGAGTTTTTTTAAGGACTGTGAATGACCTTCAGTAGCTCAGAAGCCTACATACGTCGTGGTTCATTCAGTGCGGTTTCCTGTTTCTTCTTTAGCGTACCGCTTCAATTCAAGcgaatttagcaaaaaaaatcgacgcttgggatttttttttttgtgtgtggtttggtgggggttttttttcacttattcGAATTGCGCTCAGTTAtctcatttatttgtatatcatgagtgaaaatgctgaaaaaggTCTAAggataaaatgtatgtatttagaTATGCACAGTAAATCGCGCAATAATGTCACGCCAGTTTGAGAATCGTTTGGTATTAAAATTCTCAGAGGAAAAACTGTAGTAATAAAACGTGTGACAATCAGGGCTAAAAGGATGTTGgaaatgtgtttcattttatCTCATTTGATCTAAGACTTTAAGGGCTGATGAGAGACAGCCTGGtgagcaatattttaaatatcctCTAATTGTGAATTTATTGTAGTATTAGTTACGTAAGATAGagataagtattaataaaaataggaaaaaaaaaatcttaattttgtaCATGGACGatataattatgcaaatttcTTCTTTGTTGTTGCATTGACACTTTACTAAGAAGGTTatgcagacattttttttaagtgttcaaactGTTCTTAAAGCTACAGTGCGCACGTTTTGGGAAAATctgaaataatgtatatatcTGCAGAGTGCCATTATAAATATCGAGGTTTAGGGAGTTGACACCTCAGGAAATTTTCAGTCATATCAGTGTGCTGCAGTGATGCCCCAGGGAACTTCCCCTCTGGTTGAAGGCTAAATTCAGATGTgaatacgtatatatatatatatatatatgcaaaccGGATATAAGTACACGGTTTATGAGCACCTCTTGATTTGTTATGGCAGTTTGTGGATTTTCagtatgaaaaatgaaatgcgCTGTAGCTTTAAGCCATGAGAGCTTCATTAGTGCTTCAGTGCTTCAATCTATACCTATCTTTCTTAGTACCTTTTCTACTGCATATGTGCCTTTTCCAGCTCGTGGGAAATAGAGGTGGTGTTGTTTGAACACAGACACAGTTGTGGTTTGCGGCTGATGTCATATTAAAAGGatactccacccaaaaatgaacattttgtcgtgaatcacttacccccatgcgGTTCCAGACCTCTAAAAGCGTcaaaatgtaagatatttttgataaaaagcGGGAGACTTGTGATTGTCTCATTGACCGTAAATTACTGCCAAGGTCCAGCAGAGTAtgaaaaacagtcaaaataCGTAAGACATGTAGAAAACGGCTGACAGAAGGGTGTATGTAGTTTGCGTCCAGCGGATATTCTCCCAAATGGACgaggagagacagaggaaacaaaTTATCGAATAGCAAgtcgttatttttattttctttgtgtcaTAAAACTCAGATTGAACTGCTGATTGCAGATTGAGTGTTTCTCATActtgacagtgtaatttacttggTAGTCAATGGGACATACAAAAGCCTCCCgcttttcatctaaaatatgtcaaattttATTCCGAGGCAGCTTtaacgggtttggaacgacatgggggtaagacATTAATCaccgtttttattattattattttggggtggagtatgcCTTTAAGGAAAATgatgtttgtttctgttgttgtttttttgttttttgattttttgttttccacactACCTAGATGCTATGCATGTTCGCAACTTGAACCAGTTTTTATTTCCAGGTATTATATAGAAAGACCAAATATATTAAGACTTAATTAGATATTTCATTGTGTTATGTCTTTAAAAACGTTAAGTGTTATTGGAAAGAGAGTTATGGTTGTATCGCTCGGCACATTTAGGTCCTTCATCTCTTTTGCTTCACTGCTTGTTCCCCAAACCCATCTCGAGATCTTTTTATTCAAATGGATTTGTTCTGTTCAAGTATTTGATCAGGATGCAATTTAAAACACTTCATGCCAAGTTTCCCCATTTGTGGTCATTACAGTAGCAATAACCTGACGATTATATGAAATCGTTGTTGCAGCAGATGCGGAGCACCGGCATTCGAGTCCCTTGAAATATGTGGTATATTTGAATTATCATTTATAGGGCACTTTgatttctttgaattttttttttcttgtgaaattATTGTGTAAAACAACCTTAACTGTGCCCCAGTGACATTCTGAGTACGTACTTGGATTCTTGTTTTTGATCGCATACAACTACTTCTATAattaataaaccttttaaaaaccTC

Function

GO:

id name namespace
GO:0060030 dorsal convergence biological_process
GO:0005515 protein binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K16676 LPP; lipoma-prefererred partner

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251172.1 lncRNA upstream 15629 13101279 ~ 13103566 (+) True LOC122346816
XR_006251171.1 lncRNA upstream 15629 13102272 ~ 13103566 (+) False LOC122346816
TU66120 lncRNA upstream 23285 13093856 ~ 13095910 (+) True G44640
TU66066 lncRNA upstream 34965 13083380 ~ 13084230 (+) True G44615
TU66087 lncRNA upstream 331024 12786119 ~ 12788171 (+) False crocc2
TU66449 lncRNA downstream 34373 13313553 ~ 13313854 (+) True G44872
TU66450 lncRNA downstream 56009 13335189 ~ 13335542 (+) True G44873
TU66446 lncRNA downstream 57738 13336918 ~ 13338450 (+) True G44869
TU66451 lncRNA downstream 59854 13339034 ~ 13339305 (+) True G44874
TU66453 lncRNA downstream 63296 13342476 ~ 13342840 (+) True G44876
XM_043241811.1 mRNA upstream 37076 13080565 ~ 13082119 (+) True smx5
XM_043241810.1 mRNA upstream 39149 13065838 ~ 13080046 (+) True inpp5d
XM_043241608.1 mRNA upstream 54766 13058859 ~ 13064429 (+) True gpr17
XM_043241607.1 mRNA upstream 54766 13060546 ~ 13064429 (+) False gpr17
XM_043241601.1 mRNA upstream 61074 13039523 ~ 13058121 (+) True LOC122346752
XM_043242168.1 mRNA downstream 34877 13314057 ~ 13333574 (+) True tprg1
XM_043241158.1 mRNA downstream 71341 13350521 ~ 13385990 (+) True tp63
XM_043241155.1 mRNA downstream 71350 13350530 ~ 13389446 (+) False tp63
XM_043241153.1 mRNA downstream 71353 13350533 ~ 13389439 (+) False tp63
XM_043241150.1 mRNA downstream 73297 13352477 ~ 13389570 (+) False tp63
TU66125 other upstream 9829 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 37076 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 338275 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1026740 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 1109086 12002148 ~ 12010109 (+) False LOC122346564
TU66465 other downstream 115049 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 692993 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 801753 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 1957031 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 2079681 15358861 ~ 15459386 (+) True G45419

Expression Profile