RNA id: XM_043241856.1


Basic Information

Item Value
RNA id XM_043241856.1
length 5420
RNA type mRNA
GC content 0.47
exon number 27
gene id farp2
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12011095 ~ 12055010 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCTTTGGTCGCAGTTCGCCTACAACGAAGGTCGGACGTGTAACTCATTTAGAGTTGAAGAAATACCAGGCGAAAAATAAAAGGCagggtgtgtatatatatgtgtgtgagagaggggtTAGGCTGCACTGGGAGCAGCTATGGGTGAGATCGAGGGCACCTACCGCTCCTTGCAGACTCCCGCAGGAACACGGCTCGGAGCTCAGTACAACACCGGCATCAGCACCCTGGAGCCCGGGCAGAGCCTCAGTTCAGCCATGGGAGCAGGAGGGAAAGGCTACACCAGGGGCCTGCAGATCCGCGTCCAGGGCCTGGATGATGCTCAGGAGTTCTATGACCTTGAGTCAAAAGCGGATGGGCAGACTCTTCACTCTGAAGTGTTCAGACGGATCAATCTCATTGAGAGCGATTACTTCGGTCTGGAGTTTCAGAACCTGCAGATGAACTGGGTTTGGCTGGAGCCCACCAAGCTCATAGTGAAGCAAGTGAGACGGCCGATGAACACACTCTTTCGGCTGTCAGTGAAGTTCTTTCCTCCAGATCCTGGTCAGCTTCAGGAGGAGTTTACTAGGTACTTGTTTtcactgcagatcaagagggaTCTTATAGACGGTCGACTGAACTGCACAGAAAACACTGCCGCCCTGCTGGCCTCTCATTTGGTGCAGTCCGAGATCGGTGACTACGACGACATAGCAGACAGGGAGTTTCTGAAGATTACTAAACTGCTGCCATATCAGGAACGTGTGCAAGAAAAGATCATGGAGCTCCACCGCAGACACATTGGGCAGACCCCAGCAGAATCAGATTTCCAGGTTCTGGAGATCGCTCGTAAACTGGAGATGTATGGGGTTCGCTTTCATCCTGCCGCTGACCGAGAAGGCACCAAGATCAACCTGGCTGTCGCACACATGGGCCTGCAGGTCTTTCAGggTCACACCAAAATCAACACATTTAACTGGTCTAAAATTCGGAAGCTGAGTTTTAAGAGGAAGCGATTTTTGATTAAATTGCACCCAGAGGTTCATGGTCCTCATCAGGATACGCTGGAATTTCTAATGGGCAGTCGAGATCAGTGTAAGATCTTCTGGAAGAACTGTGTGGAGCATCACTCGTTTTTCCGTCTGTTAGATCAGCCTCAGCCCAAAACCAAAGCCATCTTCTTCAGCAGAGGATCCTCCTTCAGATACAGTGGGAGGACGCAGAAGCAGCTTGTTGAGTATGTGAGGGACAGCGGGTTGAGAAGAACTCCTTACCAGAGGAGGAACAGTAAGATACGCATGTCAACACGGTCCTTGGCTTCTGATGTGCCAAAACAGAATCTGTGTTTTAACGACAGTCTAAGGTCTCCAGTCCCTCCTTCCTCTGTCACCGCCTCCTTCCACTCCCTGCATGCCCCCAGCTCGCCCATGCGGATGGAGACCCCGAACCAGCTGGTACATCTTCAGCAGACGCAGCAGTCCATCAGAGCCCCCAGCCCAATGCAGCAGGACTCCATCAAGACCAACTCCCAATCCACCTACGCCTTCCCAGACTCTGCCACGGACAGCCCACAGCTCTCTCCCTTCAACACCAAGGGTCCTCTGTGTCTGTCGCCCTCTTTCCAGATGTCCACACTCAGTCTTCCAGGCCAGGCACCTTCGCCCTTGCAGAGCCCCATCTTGAACGAGGTGggcagtgccagactagaggaAGACGAAGAGGGCAGGAGGAAGagATATCCCACCGACAAAGCCTACTTCATTGCTAAAGAGATTCTGACTACAGAGAGGACTTACCTGAAGGATCTGGAGGTCATCACAGTGTGGTTCCGCAGTGCAGTGATTAAAGAAAACGCAATGCCTGAGGGTCTCATGACCCTCCTGTTCTCTAACATCGACCCCATCTATGAGTTCCACAGAGGCTTCCTCAAAGAGATTGACCAAAGGCTGGCTCTCTGGGAGGGGCGCTCTAACGCTCACGTAAAAGGAGATTACCAACGAATTGGAGATGTTATGCTGCACAACATGTGCGCTCTCAAGGAGTTCACAGGCTATCTGCAGAAGCATGATGAGGTGTTAACAGAGCTTGAGAAAGCTACGAAGCGCGTGAAGAAGTTGGAGACTGTGTATAAAGAGTTTGAGCTGCAGAAGGTGTGCTACCTGCCCCTCAACACCTTCCTGCTGAAGCCCATCCAGAGACTCATGCACTACAAACTCATCCTGGAGCGTCTGTGTAAGCATTACGCCCCCCAGCACAGAGACTACGAGGACTGCCAAGAGGCACTGAAAGAAGTTGCAGGGATTGCAACTCAGCTGCAGAGCAGTCTGATTCGACTGGAGAACTTTCAGAAGCTGACAGAACTTCAGAGGGATCTGATTGGCATTGAGAACCTTACGGCTCCGGGAAGAGAATTTATCAGGGAAGGTTGTCTCTACAAGCTCACGAAGAAGGGTCTGCAGCAGAGGATGTTTTTTCTTTTTTCAGACATGCTGCTGTACACAAGCAAAGGGGTAACCGCTACCAATCAGTTTAAAGTTCATGGACAGCTTCCCCTGCATGGGATGATTGTGGAGGAGAGTGAGAACGAGTGGTCTGTTCCTCACTGTTTCACCATATATTCTGCTCAGAGGACCATTGTGGTGGCAGCTAGCTCCAAAGTAGAGATGAACAAATGGATTGAAGATCTGAACATGGCTATTGACATGTCAAAAAAATGTCAGGAGAAATCCGATCTCCTGTTGGACCCAAGCCTGTGTGATCGCTCCAACAGATCATCCGATGAAGTGTCTCTGGAGCAGGAGTCAGAGGATGACATGAACTCTTCCCGCTGCTCTCTGGACAAGCAGAGCCACCACAGGGCCAACACCACCATGCATGTGTGCTGGCACCGCAACACCAGCGTCTCTATGTCTGACCACAGCCTAGCCGTGGAGAACCAGCTGTCTGGTTACCTCCTAAGGAAGTTCAAGAACAGCAATGGCTGGCAGAAACTCTGGGTGGTCTTCACCAACTTTTGCCTGTTCTTCTATAAGACACACCAGgaTGACTTCCCCTTGGCCAGTCTGCCGTTGCTAGGTTACACAGTCAGTACCCCGGGGGAATCGGATAGCATCCATAAGGAATACGTCTTCAAGCTGCAGTTCAAGTCCCATGTTTACTTCTTCAGGGCAGAGAGCGAGTACACGTTTGAAAGATGGATGGAGGTGATCAAAAGTGCAGCGAGCTCCGCGGGACGCATCAGTCTGCTTGTACCCAAAGGCCCAGCGGAGATGAACGGAGGAAGCTGAGTGTGTCGGACTGATCTCCTGGAGCTGAGGGCTGGGCCCACTGTCTGCCAGGACCAAACACGCCATCAGCATTTTATCCTTTCTGATTCGTGGCTCTGAGAAGcagcagcatcatcatcatcatcatcatcagttgATTCTTGACTCTGGACTGTTAGCTCTCTGCTTGCTGGGAGTTCGAGCTGCTTATTGAAACCTCAGACCGAAGAAGTTGGTCAAAGTAAGCGCTCTGTAATCCTCTTCTCTAAATCTTCTCTCGCTTTCTCACTAATGAAACAAAAAGCGGGCGTCTTGCTTGTCTAGAACCGCGTTAGACTGAAAGAATTCTTCTAGAAACCCGTTAGACTGAATTAagttatgtttgtgtttatctAGCGGACGGTTACACGTATTGCTGTATTCAGGTCTTTGCTGAGATGAGTCTGTCATTAGGATGAGGATATTTAATGACTTGTTAACTCCAGTTTATTCAGTAGACATctagtcctgggacaggaaggcTGAATACTACTGAACGGAGTGTTGACGAACAGAGGGTTTGTATTAAGTCCAGCTGGTGCAGTAAGTGAGATGAAGGACTAGTGCTGTAAAATGCGTCTCGCTGATTTAGAAACAGTGTAAGGTTGGCGGGAGAGCACATTTACAGCACGTGGCTCAGAGACTGGAGATGGATCGCCTTCACGCTGTTAAAGGGCTGAGGGTGAGCCGGAGGTAAAGGAGGGAATCAGAGATGAGGCGCACCGCGTGTGCTGTCCTCGTCCAACGTAGGTTAAAGCATGTCTCGAAGGTCATTATTAAGCGACTGTTACTATTTAGGGGATTTTCGAGTTTcgatctgttgttttttttttttttttttttttttatttaatggcattgattttcttttaaatccgAAAACTAATCAGATGACTGAAGACTGaccaaaatattatattcactaaccaaattaaaatgtaccGTTTTAATTGACGTACTCACAAATCTCACTAGTTTAGATTTTTGGGATACTTGACAGATGACCAGCTCAAGTCTAAACTAGCCCCTTCACGGGGGACGAAGCTGCGCTTTCCTTTCAGTTTCTTCCCTCTACTCACAGAGAAGAGGAAGCGGTGACGTTCATGCAAGACCGGCCTCTAAATCTTAAGATTTAAACTGGGAGAAATGGCCTAAAGCTGCCTGTTCCCcttttattatactgtatatgtgatattttctttttttaagcatattaataataataatttacaagtTCTTTCCCAATCTTTGATttattgataaatattttttctttttttttttgttaccaatattttttttttgcgaggCATATCtcactctatatatatatatatatgtgtgtgtgtgtgtgttatggtcTAGTTTTGTTGGAAGGCcagttatttgttgttttagcaGCATGATGAAGTTCCACAGCATGTGTGACAGTGTTACGTTTACTTATCAGCTTCACTTTATGAAGACAGATCTGTACCACATCTGATTTGGGAGATTTCTCTTGCCTCTTTTTGGAGTGTCGGTTGTATTTATAAGGCTTTCGGCTTCGTCTGTTCAACATGCTGTACTGGGTCCAACCAAAGACCTGAAGAAGTCTTGCATAAGCCCGAAAAGGTCGGCCAAAGTTAGTCGGCCACACGTTAAGCAGTGTCGCTTTGTGTACTCTTAACAATATACTGTAAGCAGCTATCATCTCGACATGAGCTCAGCTAGTCTGACGTGTTTCAGCTCCTTCTTAATTCACTAATGCACTGTGTGGGCTCATGGTTtccaccctttttttttttttttttttttttttttttgtacattttatgcaaGGACTGGAATCATTTTCTTCTCCTCGTTTTCTGTATCTGGCAATAAGAGGGTTGGAtgaacgtttttttgtttttttttccatcccgGATTGCTAAGCACGAGAAAAGGGAGTTTTACTCAAAGACCTCAGTTTCCTGTCTCATTCTGAGAGGCactaaaatgagttttgatgGAATCGCTTCTCTCCAgcttttactatttatttagcGTAGCATGTTGCCGAGGCGTTGCTCCTGTACACACCGCATGTAGCAAGTTTCATGTTATGACGTTGAAGGGATgtcaaataaaactgaactgtGTAAACATTT

Function

GO: NA

KEGG:

id description
K06082 FARP2, FRG; FERM, RhoGEF and pleckstrin domain protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65972 lncRNA upstream 16958 11993558 ~ 11994137 (+) True G44575
TU65963 lncRNA upstream 33684 11976827 ~ 11977411 (+) False G44574
TU65966 lncRNA upstream 34145 11937101 ~ 11976950 (+) True G44574
TU65960 lncRNA upstream 34145 11971581 ~ 11976950 (+) False G44574
XR_006251221.1 lncRNA upstream 305169 11689692 ~ 11705926 (+) True LOC122347449
TU65995 lncRNA downstream 32389 12087399 ~ 12092455 (+) True G44588
TU66023 lncRNA downstream 99312 12154322 ~ 12155432 (+) False scly
TU66030 lncRNA downstream 103052 12158062 ~ 12159895 (+) False scly
TU66049 lncRNA downstream 422114 12477124 ~ 12482182 (+) True G44604
TU66050 lncRNA downstream 422114 12477124 ~ 12482182 (+) False G44604
XM_043241282.1 mRNA upstream 556 12002149 ~ 12010539 (+) True LOC122346564
XM_043241284.1 mRNA upstream 1213 12002147 ~ 12009882 (+) False LOC122346564
XM_043241283.1 mRNA upstream 1215 12002147 ~ 12009880 (+) False LOC122346564
XM_043241253.1 mRNA upstream 209299 11791670 ~ 11801796 (+) True dzip1l
XM_043241254.1 mRNA upstream 210343 11791670 ~ 11800752 (+) False dzip1l
XM_043241355.1 mRNA downstream 10288 12065298 ~ 12074564 (+) True boka
XM_043241353.1 mRNA downstream 20440 12075450 ~ 12082028 (+) False atg4b
XM_043241352.1 mRNA downstream 20569 12075579 ~ 12082028 (+) False atg4b
XM_043241351.1 mRNA downstream 20571 12075581 ~ 12082028 (+) True atg4b
XM_043241394.1 mRNA downstream 42670 12097680 ~ 12152964 (+) True kif1aa
XR_006251144.1 other upstream 986 12002148 ~ 12010109 (+) False LOC122346564
unassigned_transcript_1089 other upstream 38051 11972971 ~ 11973044 (+) True trnai-aau_2
TU65822 other upstream 590765 11415273 ~ 11420330 (+) True G44478
TU65824 other upstream 590765 11415273 ~ 11420330 (+) False G44478
TU65546 other upstream 1137517 10870409 ~ 10873578 (+) False LOC122347096
TU65993 other downstream 32389 12087399 ~ 12092455 (+) False G44588
TU66085 other downstream 711173 12766183 ~ 12780920 (+) False crocc2
TU66063 other downstream 1025600 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 1053725 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 1339219 13394229 ~ 13409912 (+) True G44887

Expression Profile