RNA id: XM_043241881.1


Basic Information

Item Value
RNA id XM_043241881.1
length 4298
RNA type mRNA
GC content 0.40
exon number 9
gene id cnga3a
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19071405 ~ 19078891 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTagaataaatcattataaaaataaacaaatgttgcCTTAAGGATAAGTAATACAAATAACAGATGGATTATaaacattgtgttttgtttggttgTACAAATGGCAGAGCCATTAGCGTTTATCATTGCTACTGAATATTAATGAGACGACGAGCGCTAGGCTCCGCCCACGTCCACATCGAAAGCTCGGAGCTGTCAGTCATCTGAGGAGCCGAGGACTTCTGAACGCATCATTTTACCggtctattaaaaaaaaattggacatCTAAGAATCACACATCATCACAGTCTAGAGAAGACTGGCGATGGAAGCAAAAGTGGGTGAAAACTGATGGCCAAAAATGCAAACTCGACTTAGTTCTTTAAAGATGGGATTGTACATAACACTGAGCAGGATCACCAATTGCTTGAACCAAAGAGCAACTTGAACAGGGATTCTGTTTGAACCTGGGTCTCTAAATCTGTTGGACTACTAAATATTGTTGCTTCGCAGTGCTGAATGCCTAGAAAAggcaaagagaagaaagagaatggCGAAGATCTGTACAGAGCAATCCTACCCATCCAGGCCCAGGCTCTCGGACCGAGCCTCTGAAGATGAACTGGACGAGACGAATGGTGCAAGCAGGGCGCATTCACTATGTGAGGAAAACTCTGACATGCAAGGCATAATTTCTTCTGCAACCAGCCAGTTTCAGGAATCCAGGAGGAGCTCTTTTACAGGTGCTGGGGCCATGGCAAGGCTCACCCAGTTTCTGCTAAGGCTGAGGAACTGGGCATCACACAGAATTCACAGAGAGGTTGAACGTCCCGACTCCTTTTTGGAGCGATTCCGCGGACCTGACCTTAAAGACTTATCTAGCCGTGGAAGTAATGCCCGGTCCTCTATTGGCCTTCCTGACAGGCCTCATAAGAGGAAAAAAGCCAAACAGTGGCCTCTGGCAGCTTACAATATGAACAACTGCAATAACACAGATGACAAAAAGGAGGacaaaaaggaagaaataaaaaaagatgaagacaagaaggaagagaaaaaagatgagaaggaagagaaaaaagatgagaaggaagagaaaaaagatgagaaaaaagatgaaaaggatgagaaaaaagatgagaaaaagGATGAgaaaaaagatgagaaaaagGACGAAAAGAAGGATGATAAGAAAgatgataaaaagaaagatgctCCTCCTCCGCCGAAAGAAGTGTGGATCATGGACCCAGCCTCAGACAAGTATTACAGATGGCTTTCAGTCATAGCAGCCCCAGTGTTTTACAACCTGATGATGCTGGTCACAAGGGCCTGTTTCAACGAGCTTCAGAATTCTTACACGATGCTTTGGATCATCATGGACTATACCTCAGATGTAATCTATTATGCAGACACATTTGTCAGATCAAGAACAGgcttctTGGAGCAGGGTCTCCTTGTCAAAGACTCTAAGAAGTTGATGAATCATTACAGGACGATCCCACAGTTTAAATATGACATGTTTTCAATGATCCCGACGGATATAATAATGCTGAAAGTGGGCTTCAACAATCCCGAACTTCGCTTCAACCGCCTTTTCAAAATGGCACGCCTCTTTGAGTTCTTCGACCGCACGGAAACCCGAACAAACTACCCGAACATTTTCCGCATCAGCAACCTCGTACTTTACATCCTGATTATTATTCACTGGAACGCTTGCATTTTCTTTGCCATTTCCAAAACGATTGGCTTTGGGACTGACACGTGGGTATATCCAAACATCAGCCATCCAGAATACGGCCGCTTGGCTAGAAAATACATCTACTGTCTGTACTGGTCCACTCTTACTCTCACCACCATCGGAGAAACACCACCTCCTGTTAGAGACATTGAATACTTGTTTGTCGTCATGGACTTTCTCATCGGAGTGTTGATTTTCGCTACCATCGTCGGTAACGTCGGTGCCATGATCTCCAACATGAACGCTTCTCGTGCTGAATTTCAGGCCAAGATTGACTCCATCAAGCAGTACATGCAGTTCCGTAAAGTCAGCAAAGACCTGGAGGCCAGGGTCATCAAGTGGTTCGACTACCTTTGGACGGAGAAAAAGACTTGCGATGAGAAGGAAGTCCTGAAGAACCTTCCAGACAAACTCAAAGCTGAAATAGCCATTAATGTCCATTTAGATACACTGAAGAAGGTGCGAATCTTCCAGGATTGTGAAGCTGGACTTCTTATCGAGTTGGTGTTGAAGCTGCAGCCTCAGGTGTTCAGTCCTGGagattatatatgtaaaaaaggGGACATTGGTCGAGAAATGTACATTATCAAAGAAGGAAAGCTTGCCGTGGTGGCCGATGACGGCATCACGCAGTTTGTGGTGCTCAGTGACGGCGCTTACTTCGGAGAGATCAGTATCCTCGGAATCAAAGGCAGTAAAGCCGGAAACAGAAGAACGGCAAACATTCGTAGCGTCGGCTATTCGGACCTCTTCGCGCTGTCTAAAGATGACCTCGTGGAAGCGCTTACCGAATACCCAGATGCCAAAAAAGCCCTGGAGGAGAAAGGAAAGGCCATCTTAAGAAAGGACAACCTTCTTGACGAGGCGATTGCGGGCGCCGGTGCCGATCCCAAAGATCTGGAAGAGAAGATTCACCGCCTCGAGAGCAACCTTGAAGTCATGATGGGCAAGTTCGCCAAGCTTATGGCAGAATACACATCCTACCAGAGCAAGATGAAACAGAGGATCACCAACATGGAGGGCAAAGTGAAAACACTTCGGGTGGAAGATCTATCTGAGGTTGTTGAggacaaaaaagaagaagagaagaagaccAAATAGGCAACAGCATAGACATCGGGGTTAATGGGGTTTCCTATCCATGGACATATTTCTTAACATAgtacattacttttaaaatgtttatacttatttataagTTTTACATGACAATGTTGTACTaattgccatatatatatatgtgttgaAATGTAATGCtgatgtatttattcaatatgtGCAGTAAGAACAGATCAGATGACAGACAGGGAAGAGAGATACACTACCGTTCGAAAGTTTGGggttttaaaatgattgcatatttttaaaacaatgtttattatgCTCACTCAGGCCGTATTTATATTTACGGGAAAAATATTAATACcctgaaatattatcacaattgaaaatattttcttaagaTTTTTCTGTATGAActtaatgcaaaatgtaatttatgctgACAGGGGTGCGCAAGAAGCATTTCACATCATGATCAGCGCTGATGCATAAACACTAtacaaatgtctttacatttattaactCATTAAAACTGCTTGGCATTATATCTTTGGCTACTTTGTAACATTAGTGTTTCTTTGTGGTTTCTGTCAAAAACGTGGCCAAAAAGGCACTTTGTAATGGATGAGGTCTACATTTATAGGTCAGACTCTTTAATTTTTGATTTGGTGCaagtatgaaaaaatatattttaaatgagcatttAATTACTCTGACAATGATGTTCTGATTCTGCGcattaaacaattatattaatattaacgaTTACATAAATTTCATAATATGGCTAATAGCAATGTTTGAAAAACAAGTCAACATGGACAAAGCTAAAATCATCCCCAACACAAGCcaaaacattttagtatttattatccAAGAGTAcccaaaatgtgttctttaatAAATGTTCTAACAACTGTTGTTTGCTTgtcaatgcatttcttttaaaagtaatattattcaGTGGACTACAAAAGCTGGACTGGAAGTTCTCAAAATACCAGGCATGtattgtgtgtgcatgtcattTTAGGGACCACAAACTGTACTCATAGAGAAAATCTGATATAGAAAAGGTGAAACAGTGCATGTCCAAATGTAGTGCTGACAAAGGATTAATCGCGATTAgaagcatccaaaataaaagtttgtttatatatgcatgtatactgtgcatatttatgcataaatatgaacatagacttgtaaacagatttttatttccttgtaaaatatatatattttttaaataaacatgcatgtgtttttatatatagataataaaatgaacagaatacacaccacacatacattatgcaaacaaaagctTATTTTGGATTAATAGAATGCagttaatcgtttgacagcaactataataataattgcatataattattttttttattaactgaccCGTTTGATGCTAGACACCAGGCAACTTAATCCTAAAGTgactaaaatctttttttattaaaagctaaaCTATGTTTATAAAAGAGCTAAAGTATTTAGGC

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007603 phototransduction, visible light biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005222 intracellular cAMP-activated cation channel activity molecular_function
GO:0005223 intracellular cGMP-activated cation channel activity molecular_function
GO:0030553 cGMP binding molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04950 CNGA3; cyclic nucleotide gated channel alpha 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68847 lncRNA downstream 22569 19044704 ~ 19048836 (-) True G46477
TU68845 lncRNA downstream 22659 19044628 ~ 19048746 (-) False G46477
TU68850 lncRNA downstream 22659 19044704 ~ 19048746 (-) False G46477
TU68844 lncRNA downstream 27536 19043616 ~ 19043869 (-) True G46476
TU68814 lncRNA downstream 99035 18970170 ~ 18972370 (-) True G46463
XR_006251202.1 lncRNA upstream 70855 19149746 ~ 19151694 (-) True LOC122347223
TU68898 lncRNA upstream 133748 19212639 ~ 19242811 (-) True G46509
TU68953 lncRNA upstream 314586 19393477 ~ 19397730 (-) True G46540
TU68954 lncRNA upstream 314586 19393477 ~ 19397405 (-) False G46540
TU68955 lncRNA upstream 314586 19393477 ~ 19397730 (-) False G46540
XM_043241306.1 mRNA downstream 82965 18986050 ~ 18988440 (-) True LOC122346582
XM_043242960.1 mRNA downstream 305922 18763245 ~ 18765483 (-) True LOC122347578
XM_043241381.1 mRNA downstream 327289 18743065 ~ 18744116 (-) True LOC122346645
XM_043242401.1 mRNA downstream 363809 18706623 ~ 18707596 (-) True LOC122347235
XM_043241259.1 mRNA downstream 365673 18702854 ~ 18705732 (-) True LOC122346546
XM_043242375.1 mRNA upstream 34787 19113678 ~ 19123976 (-) False hdac7b
XM_043242373.1 mRNA upstream 34787 19113678 ~ 19123976 (-) False hdac7b
XM_043242374.1 mRNA upstream 34787 19113678 ~ 19123970 (-) True hdac7b
XM_043242376.1 mRNA upstream 34789 19113680 ~ 19123976 (-) False hdac7b
XM_043242380.1 mRNA upstream 50321 19129212 ~ 19149731 (-) True vdrb
TU68851 other downstream 15274 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 353917 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 426271 18644306 ~ 18645134 (-) True G46420
XR_006251188.1 other downstream 1297298 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other downstream 1297298 17743715 ~ 17774107 (-) True opa1
XR_006251201.1 other upstream 36170 19115061 ~ 19149730 (-) False vdrb
TU68985 other upstream 474428 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 474428 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 587543 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 764153 19843044 ~ 19847398 (-) True tspo

Expression Profile