RNA id: XM_043241906.1


Basic Information

Item Value
RNA id XM_043241906.1
length 5329
RNA type mRNA
GC content 0.43
exon number 10
gene id nos1apa
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16687378 ~ 16764274 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATCAGCATGTGATGGGCATAAGATTAGATCTCAACTCGTACCGAGGTCTGCCACTAGGTGCCATTCTCCGCTCTCCTTGAACACCATTGTTGGGTGTTGAATGTGAAgcgaggttttttttctcctcctccaAACCTGCGATGAAGCCGTGTTCCAATGAAAGCAGGTGGAATTCCCCCTTTCAACCAATGGCGCTCTGCCCTCGCAACAATCCTTTCGAAAAGGATGTGTGGGCTCGGTTATGGCGCTGGCGTGAAGTTGTTGGAAACGGACAAGCCCAGGAAGCAGGATTTTGGCACTACTACACCAGCTAAAGCTTAGGGCTGCCCGCTTGAATGGGAACAAGTGAGCGGACCGTTCATATTCGCTCAAACGTACACCTTGGAAGCCACTTCGGCGACGCCGGATTGAAAATAGTGATTTCAACAAAAGTTGCTCTGTCAAAAGCGAGCACGCATGAGAAATAAGAGTAACCTCGGGCTTAAAAAAAGGCATGGACCGCAGGAGTTAGACTGAGTTCCGACTCCCCTCgagctgtttgtgtttttaactgACGAGAAAGACTAAAAACAAGCACCATGCCTGCCAAAACAAAGTACAATTTAGTCGATGATGGACACGATTTGCGGATTCCTTTACATAACGAGGAAGCGTTCCAACATGGGATTAATTTCGAAGCAAAGTATATCGGTAGTCTGGATGTGGCTCGACCCAACAGCCGTGTGGAGATTGTTGCGGCCATGAGGCGCATAAGGTATGAATTTAAAGTGAAGAATatcaaaaagaagaaagtcaacaTAATTGTGTCCGTGGACGGGGTAAAAGTAGCGCTgcggaaaaagaaaaagAAAAAAGAATGGACCTGGGATGAAAGCAAGATGATGGTGATGCAAGACCCAATATACAGgataTTCTACGTATCGCACGACTCTCAAGATCTGAAGATCTTCAGTTACATAGCAAGAGATGGACAGAGCAACGTGTTTCGATGTAACGTCttcaaatcaaagaaaaagAGCCAAGCCATGCGGATAGTGCGGACAGTGGGTCAGGCTTTTGAGGTCTGTCATAAACTTAGCCTGCAGCACACCCAGCAAAACGCAGATGGCCAGGAAGACGGCGAAGCTGACAAGACGTGCACAGATTCTGGAGTAACAGGGCGGGAGCTCACAGGGGCCGAAAAGCCGGCTGCGGATGAGACAGACATTGATGCAGAGGAGCTTCCCCTCCCCGACAGCACAATGGACGAGTTCAGTCGTGGAGTCACTGACCTGGATGCGGCCAAGAAAGAGGAAGATGTCACCAAGGACAAAAAGCCCTCCGAAGAGCCCAACATCCTGCTGGCTTCCCCCAAGTTGCTGCTTCCTTCAGGCAGTCAGCTGCCAGCCAGCACTCCCCTGTCTGTGCACCACCAGCTCCAGCTGCTCCAGCAGCAGCTCacccaacagcagcagcagacaCAGGTGGCCGTGGCCCAGGTTCATCTGCTGAAGGATCAGCTCTCTGCGGAAGCTGCGGCGAGGATCGAGGCCCAGGCTCGAGTTCACCAGCTGCTGCTGCAGAATAAGGACCTACTAcagcatatttctctcctggtCAAACAGGTTCAGGAGCTGGAGTTCAAGCTGGCTGGGAATGGCTCTATGGGATCCCAAGACAGTCTCCTGGAAATCACCTTCCGTGCCAATGTGCCCCCAGTCCTATGTGACCCCACCACCCCCAGACCAGAGGACGCCATTCTTCCTCCACTCAATGATGGGACACAGCTATCCCTGCCTCTGGGCAGTCCTATAGGTAGGGACCAGTGCTTGATCAAGTTTGAGTGTTTCCGCTTTCTTCCGGGACCACCCCAACAGGAGGAAAGTCCTGACACGCCATCCCAAGGCATCTCGCCTTCATCACGGGACGAGCTTCTGGGTAGCCTCGAGCTGCTAAAATTCCGTGAGTCAGGTATCGCATCAGAGTACGAGTCCAACACAGATGAGAGTGATGAAAGCTGGGGACAGCAAGACGAGAGCACTCTTCGTCTGCTCAATGTGCTCAACAAACATGGCCCCTCTGACTGCTTGGAGGACGAAATTGctgtttaatgtgatttttgcGCACTGCTTGATGCTTTGCTTAGAAGGTTCAAGTCAATCAATGTCAATATTGTCAAAACATCTACTGCTGTTTGTACTACAGATGGAGAGACCGGGAGACCAAGGTGACATTAACGATGGCCGTATCGTTTGTCACATTTTATGTCATATATTGAAAATCAAAGAGTCCCAAGGCATAGTAAATGCTCTTgtcttcattttaaagtttaggGACACTCATCAGATGCCAGAATCTTGTATCTCTACTTGAACGTTCACACACTCAGCAATGGAGGTCGCCAAGTGGATATATTCTTGGTCATAATGACCATCCCTACTTCCAagcactccacacacacacacacacacacacacacacacactatattgccaaaagtattggaTTACTTTtctagtaacactttacaagttcagtttgttaacattaattaagtGTCATGAATTGacagaattattttcatttcattttcaaattatttagtaaaaataaatcatacaaatcGTATGTATGGCTGGATGGATAGATTAAACTTATAGTGTAGTGGTATATACACTATAAGTACAGTATATCTTATATACCATTAGATATtttgtttatactgtatataattaaacacataaattatgaatattgaataaaaataacaattatttacaaatatagtaatgttttgttgtatttaaatagtttaacattgaaatgtaattataaattatattagtatgtttactatatatatttaaatagtttattttttaattgttttgaacTAATTGAACATTATTGTaaagttataatattttacattcttgCATGTCGACAgcaactgatttaaaaaaaaaaaaaaaaaaaaaaaagataaacgtAGAAAAGTTAAATCACAGTAGGAAGATTATTTGTTCACCAACATCTTCCCTCCTATTGGTAGCTGCCACATAActcatttgcataatataataatacatccCTGGACGCTCCCACTTTTTATTAACTCCCGCTATTGGCTTTGACGTCAGAAACCGCTGTATGTGTTAACGCTCTTTTAGAGTCTACAAGCGAGTGCTGGTTATTCTCAAAcaagtaattgttttttaactGCAAGAGATACATGTGAAACGTAGaacaaattttatatatcaaCCTGTGAAATTGTATCTATGACATCAGTTGTACAGTTGCGGGTTTGCTTCTGGGCGGTATTGGACATGTTTGCTCTGATTTGCTCAGCCAGTTAGATCACCTTTCATCTCAGAAATGCTCAGAATGAAGACAATTACCCAGCTACATCTGTTTTAGCATGCACGACAGAACAGACTCTTAATTGAATGACTGTGGACTGAGGACGCTAAGCTAATTATACCCTAAGGGTAACGAGGCGTCTAAACCGGTCAGATCTTTACCAACAGGAACCCCAATTAGAGTGTCAGAGTTTTCACAACCCACAtcctttattcattattttcatattcagaAAAGCTTGTCGTGTCTGACTGCTTCACATATTAACTTTTGTACACATTTAGCTTTTCTGCGTTTAGTTTTTCTGTGCTTCTAAAAAGTGATATTTCGGTGTCTTACCTGTATCTCTCTGATAAACTGCTGACTCTTTAACTTctctgtttatattttgcagtttttccctctcgctctctctgtttctctctgtgtgcCCAGTGTCATTTAGAGGCAGACAAGTGCACACAATTAGACTGGTAATAATAGAGTGGTAAGCGGTTCGTCCCACACATTAAGGACATCGAAAGCGCTTTCTGTTGTTGGTTTAGTCTTAAACgtctgtattttcattaatttatgcactgatatctttttttcttttctttccaccaagaaaacagaatttaccGTCTTTAAATCTCCTTCAGTCTTGTAACGCTCTTCCCACAGATTCTTCACTGTGTCTGTAATGAGGGCTCATGATCAGTCGTGTTGGTTCACAGCAGGTCTGGAGGCCAAGACCCAGCTGTGAGCTGTGAGCTGTGGTCTAAATCCTCCACAGGAAAACGTGTCATCGTCtgaacaaaaaaaccaaaaacaaaacaaaactgtattttcatttatttctcctCCTTCAAGGACACGGTATATTTGtattagtggtgtttgctaagGCACATGCATCACTGCTGCTgttgtgtaaaataatttttggagCAATAAAAGTGGGctcttttaattgaaaaaagcaATTAGCATAGAACCGCCCTAGCAACTGCGCAGCAATGGCATGGAATCCAATCAAAACACTCAATTTAGCAGAGAGTTGcttttatatgatatttatgCCTGAGGAAGCACggctaattattaaaaaatcatCATCATTGATCTTGTCCTTGAATACTGGCCACTgttagtttttgaaaaaaataaaaattcaataattatTCCACTGAAAACCTGCAGTAACCTACAAAGGGACAATTCATGGTTTATTATTCATGACACCAAAGGCTGTTTTCGAAGTATATGACTCATTTCaaagccattttaaatgagttGTGTCATTTTTAAGAGCTTTGCGGTGACACAGCGTGACTGTGTTCATTCAGTGTCATTCTCGGTGAATATTTGGTGACGCGCATCGAGTTGAATTAGCAGGTCAAGGAGTTTTATGAGCTAGTTTTTCAAATTGCCTATATGAACTGCCTTTACTTTAGTAGCAAGTGCACACTGGTTGAGTTACACAcgcatccatccatcatgaATACATCTGATTGACTTTCCTAGTTAAACTGTGGTTCAGTCGTTCTGCGATTCCAAGAATTGCCGGCATGCGAATTGAACCACTTCAGACACCATATGCACACACAGCTGcttcaaaaaatagaaataaccACTAAAACGTGTAGCGCTCACAAAACGAGCAAGTGCAGAGAACGCCATCTGAATCGCTGTGTAATTTAGAGGATGTTCTGGAGCGTCCCCGTCTCATCTTTACTCGCTCAGGGAAACGAGCTGCTGTCGGATTGATCCTTCTCCCTGCGGCGTAATTGAAATTGCATAACAATATCACATCTCATTTTAGTACAGCTGCTGCTTCTGAGAGAAGCTGTTGGAAACTCGGGTGCCTCTGAATTAGAGGCTCATGCCCGGGCCCACCTGCTCGCTCTGGAGGCTTTTGAGAACATTCATTCTTCTGAAGTTGCCAAGGTACTTTGACTCAAAGTGTTCAGCTCCAACAATTGCAGAGAccataaacctttt

Function

GO: NA

KEGG:

id description
K16513 NOS1AP, CAPON; carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67746 lncRNA downstream 364573 16320413 ~ 16322805 (-) True G45770
TU67717 lncRNA downstream 416270 16270902 ~ 16271108 (-) True G45753
TU67716 lncRNA downstream 417986 16268915 ~ 16269392 (-) True G45752
TU67715 lncRNA downstream 419836 16267183 ~ 16267542 (-) True G45751
TU67666 lncRNA downstream 568792 16058245 ~ 16118586 (-) False G45709
TU67946 lncRNA upstream 423182 17187456 ~ 17187794 (-) True G45897
TU67960 lncRNA upstream 479406 17243680 ~ 17246369 (-) False LOC122347244
TU67974 lncRNA upstream 648764 17413038 ~ 17414139 (-) False brinp3a.2
TU67995 lncRNA upstream 750364 17514638 ~ 17518605 (-) True G45930
TU68086 lncRNA upstream 1043347 17807621 ~ 17808115 (-) True G45993
XM_043241907.1 mRNA downstream 3945 16676285 ~ 16683433 (-) True LOC122346973
XM_043242411.1 mRNA downstream 27645 16649465 ~ 16659733 (-) False uap1
XM_043242410.1 mRNA downstream 27645 16649465 ~ 16659733 (-) False uap1
XM_043242409.1 mRNA downstream 27645 16649465 ~ 16659733 (-) True uap1
XM_043242695.1 mRNA downstream 39763 16618572 ~ 16647615 (-) False ddr2a
XM_043242107.1 mRNA upstream 24403 16788677 ~ 16796152 (-) True rgs5a
XM_043241263.1 mRNA upstream 43337 16807611 ~ 16809797 (-) True rgs16
XM_043240975.1 mRNA upstream 53104 16817378 ~ 16830261 (-) False rgs8
XM_043240971.1 mRNA upstream 134411 16898685 ~ 16926368 (-) False brinp3a.1
XM_043240970.1 mRNA upstream 134411 16898685 ~ 16926368 (-) True brinp3a.1
TU67772 other downstream 323358 16361200 ~ 16364020 (-) False fam183a
TU67689 other downstream 626912 16059893 ~ 16060466 (-) True G45731
TU67688 other downstream 627611 16058968 ~ 16059767 (-) True G45730
TU67521 other downstream 1081908 15603910 ~ 15605470 (-) True G45606
TU67455 other downstream 1356561 15328967 ~ 15330817 (-) False LOC122347580
TU67937 other upstream 52366 16816640 ~ 16830208 (-) True rgs8
TU67944 other upstream 422415 17186689 ~ 17187318 (-) True G45895
TU67962 other upstream 543541 17307815 ~ 17308478 (-) True G45910
XR_006251188.1 other upstream 979441 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other upstream 979441 17743715 ~ 17774107 (-) True opa1

Expression Profile