RNA id: XR_006251188.1


Basic Information

Item Value
RNA id XR_006251188.1
length 4701
RNA type transcript
GC content 0.45
exon number 31
gene id opa1
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 17743715 ~ 17774107 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGTGGACCAGGAACTACTTTCCACTCGAGCAGCGCTTGACACTGGTGATCGCCTGCTTGTATGCCCTTGTTAGCCACGCAGCTAACCTAAGTACCCTATTTGGAAAGATgcattgaattttatttcagaaagcaATCTGATAGACACGTATATTTGCCATTAGTTGCTAATAGCAGGATGTTACGAGCCGGAAGTGTAGTTACCTGCATTGCCTGCAAGAATCTGCTTCCCTCCAGAATGGGGGTGAAGTTCAGAGTTCCTCTGCAGAAACTGCACCCGCTCTCCCGTGCCATCCATCACCGCTACTCAGCTAACAGCAATCCTCAAAGACCACCTCACTGCTCAGCTGCCCGCCATTACACGTCTCTTTCCAGGCTCCCTATGCGTCCTCCCAAATCCCGATCAGGAGGCCACGGCTATCAACAGCACCGGTCCTTCTGGGTAGCCCGTCTTGCTGCCAGACTGCTGAAACTGAGGTACATCTTGCTGGGCTCAGCAGTTGGAGGTGGATATACAGCAAAAAAGACTTACGATGAATGGAAGGATATGCTTCCTGATATGAGCCAATACACATGGATTGTGCCAGACTTTGTTTGGGAGCTGAGTGAAAACATTGACTTAGACAAGCTAGCCAGCGCTTTGCCTGAATTAGAAGAGATAGCCAAACTACTACCTGATATGGAAAAGATCGGAGAGAACTTCACCTTCCTGAAGAGCCTCCTCTCTAGTGGTTTGGGTAGTGAAGTCAATGGAGCTTCTGGTCTGCGTCTGTTATTAGaaacCACAGGTGAATCAACCCTGAGAGCAACAGATGTCCCACCAACATCTGCAGCCATGTCTGACAGCAGTGATAAACAGTTTAAGAAGCAGGGGCTGCTCAGCGAGCTCATTCTCATTCAGCAGCAGATCCAGCAACATGAGGAGGAGATGCGGCGGGCGGCAGCCAATAATGCTCCGCCTCCGCCGCGTGAACCCAGTCCCAGCCCGGCCCCGAACCCCAGCCCCTCGCAGTCCAAACGCAAGTCATCTGACAAAGAAAAAGTTGACCAGCTTCAGGAGGAACTTCTTCGAACACAGTTAAAGTACCAACGGATGCTGGAGCGTTTGGAGAAGGAGAATAAGGAACTGAGGAAAGTGGTGCTGCAGAAAGATGACAAGGGCATTCACCAAAGAAAAGTCAAGAAGTCCTTGATTGATATGTACTCTGAGGTCCTGGACATTCTGTCAGATTATGACTCTAACTACAATACTCAAGATCATCTACCAAGGGTGGTGGTAGTTGGAGACCAGAGTGCTGGGAAGACCAGTGTGTTGGAGATGATCGCTCAAGCTAGGATCTTCCCCAGAGGCTCTGGAGAAATGATGACCAGATCTCCTGTCAAGGTGACGTTGAGTGAAGGCCCTCACCATGTAGCAATGTTTAAAGACAGCTCTCGTGAATTCGACCTTGGGAAAGAGGAGGATCTCGCAGCATTGAGGCACGAGATCGAAATCAGGATGAGGAAGAGTGTGAAGGAAGGGCAGACAGTCAGTCCTGAGaCCATCTCTTTAAGCGTAAAGGGTCCAGGAATCCAGAGAATGGTGCTTGTTGACTTGCCTGGTGTCATCAGTACTGTGACAACCGGCATGGCTGCTGACACAAAAGAAACCATTTTTAGCATTAGTAAAGCCTACATGCAGAATCCAAATGCCATCATCCTCTGCATTCAGGatGGTTCAGTAGACGCAGAGCGTAGTATAGTCACTGATCTTGTCAGTCAGATGGACCCTCAGGGCAGAAGGACCATCTTTGTTCTTACCAAGGTTGACCTGGCAGAAAAGAACCTAGCTAGTCCAAGCAGAATCCAGCAAATAGTTGAAGGCAAGTTATTCCCAATGAAGGCTTTGGGATACTTTGCTGTAGTAACTGGCAGAGGCAGTTCTAATGAAAGCATAGACTCCATCAAAGACTACGAGGAGGACTTCTTTCAGAGCTCAAGACTGCTGAAGGATGGCATGTTGAAAGCTCATCAGGTGACCACAAAGAACCTGAGTCTTGCTGTGTCAGACTGCTTCTGGAAGATGGTCAGGGAGTCGGTAGAACAACAAGCAGATGCCTTCAAAGCATCCCGATTTAATCTGGAGACTGAGTGGAAAAACAACTATCCTCGCTTACGAGAGCTGGACAGGAACGAGCTGTATGAGAAGGCCAAAAATGAGATCTTGGATGAGGTGATCAGCTTGAGTCAAGTTACACCAAAACACTGGGAGTCCATCTTACAAAAGAAGCTTTGGGAAAGGGTCTCAACACACGTTATTGAGAACATATACCTGCCTGCCGCTCAGACCATGAACTCAGGCACTTTCAACACCACTGTAGACATCAAACTTAAGCAGTGGACCGATAAACAACTTCCTCATAAAGCACTGGAGGTTGCTTGGGAGACATTGCAGGAGGAATTTGCCCGCTTTATGGCAGAATACAAAGGGAAAGACCAGGATGATATCTTTGATAAGCTAAAAGAAGCAGTCAAGGATGAAAGCATTAAACGACACAAGTGGAATGAAAGAGCCATGGACAGCTTgAGAGTGATTCAGCACAATGCTCTGGAGGATCGCTCTATCACAGACAAGCCCCAGTGGGATGCCGCTATTCAGTTCATGGAAGAAACGCTGCAGTCCCGCCTTAAAGACACTGACTCAGTAATAGGAGATATGGTGGGGCCAGACTGGAAGCAGAGGTGGTTGAGCTGGAAAAATCGAACACCAGAACAGCACATCCGTAATGAGACCAAAAACGAGCTGGAGCGTCTGTTGAAGTTGCATGAGGATCACACAGCCTACCTGGCCAATGACGAGGTCACTACAGTGCGCAAAAACCTGGAGGCCCGAGGAGTGGAAGTGGACCCCGTTTTGATCAAGGACACGTGGCACCAACTCTATCGGCGTCATTTCCTGCAGAAGGCGTTACTACATTGTAATCTCTGCCGGAGAGGTTTCTACTACTACCAGAGGCACTTTGTAGATTCTGAGCTTGAGTGCAATGATGTGGTTCTGTTCTGGAGGATCCAGAGGATGTTGGCCATCACAGCCAATACTCTTAGACAACAGCTCACTAATACAGAAGTGCGACGCTTGGAGAAGAACGTTAAAGAAGTATTAGAGGACTTTGGAGAGGATACTGAGAAGAAAGTCCAGCTGATCACAGGCAGGAGGGTTCAGTTGGCAGAAGACCTCAGTAAAAAAAGTACGTGAAATTCAGGAGAAACTTGAAGCTTTTATTGAAGCTCTTCACAAAGAGAAATAGAGCAgatcatCTTGTTTCTGGACAGTCATGCCCTTACAGAAGAAAATGCACTGATTAAATACAACATCATTTTTGCTCTTTGCCCTTTGTAAACTTTCTACCCAGCTCATCGTCTtctctgtttttaatgtatCCTCCTTCAGCTTCCAGTCTTCTCGAACACgcttctctctcacactctcccCCCCTGAAAATCAGTGAAAGTAAGCAAAGTGAGCTGGAGCCCCTTTACGTTTGCTGCATATTTAATCACTGTTGGAGAACAAGCACTTACTCAAGTAAAGAATGGTACATGTCAGTGCCATGCATTCTTTCTTTCGTCCTCCAGCGCTTAAAAGCCACCAATGTGTTCCCCAGACATGTTCTACGAGGAATCAGTCAGACAGACATGCGCACACATCTTCTCTCAATCCCACGTTCCCAATAAAATACTTTGTCCGGGTCTCTCTTTGCCCTGACTTTCTTTATTAGTTAAGGTGATGTTTATGGTAAAGCCAAATGGTGAAATGCATCTGGCATTGCTATAAATAGAGAAAGTATTCAAAAAATGTCTTATCACCAGTTGCCGCCTTCATTCATGTTTTGGAACTGTTATTTCACAATGTTTATTGAAcatctgtctcttttttttgacGCATTCACAGCCACAGTAACAATATACCAGTAGACCACCGTCtaaatcttttgtaattattttgtagaTTCTGTTATTGATATATGCAGTTGTTTGTACAGTAGATCTAATCTGCACCTCATTTGCTTATAGTCATCTTTAGCTTAGTTTAATATATTGAAGAAAGAGCTAGGAGACGTGGTCCTGAAGATGCAGAACATTTCTTTATAAGGAGACCAGATCACACCATCTGCTCACACAGGTGGATAAAAATGCATCGGCATATCCTGTTTGCTCCTTTGGCCCTAAACACCATTTCCTCTCACTTTGTTTTACGACTGTTTACTTTTGAGAGATTCAAATGGTTCTTCTTTTCGTCAGTCATCTTCAGCTTTAGTGCACTTTTAATTCTTTgcttgcacattttatatttcgaATTAATAGATTTGTTTTGTGGTCTCACTGGGTTTTATATAAAATCCACATTAATGTCCTGAGCATTTTGAGTGTAAGGGACACCACATTTTTGTTAATGGTTgcttataaatgtaaatgggtAAATTATACATGTGCTTGTATAGTATCTCTTGAGTAAGTTCATTGAAATCACTGATCTGTCGTCACAGTGGGAAAATATCTGAGTGTGGTGCTTGTAACAGAATATCTGTCGAATGATTTAGGAACGTTTCCTCCTTTTTTGTTGTAGATTGTAATGTTTGCATGTTGTACCCCATCAGATgtggtttatttattgaattggtgttaaaaaaaaaggagtaataaaagtgactttaaatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67995 lncRNA downstream 225110 17514638 ~ 17518605 (-) True G45930
TU67974 lncRNA downstream 329576 17413038 ~ 17414139 (-) False brinp3a.2
TU67960 lncRNA downstream 497346 17243680 ~ 17246369 (-) False LOC122347244
TU67946 lncRNA downstream 555921 17187456 ~ 17187794 (-) True G45897
TU67746 lncRNA downstream 1420910 16320413 ~ 16322805 (-) True G45770
TU68086 lncRNA upstream 33514 17807621 ~ 17808115 (-) True G45993
TU68093 lncRNA upstream 48429 17822536 ~ 17822735 (-) True G46000
XR_006251164.1 lncRNA upstream 266257 18040364 ~ 18044630 (-) False LOC122346731
XR_006251163.1 lncRNA upstream 268540 18042647 ~ 18044630 (-) True LOC122346731
XR_006251165.1 lncRNA upstream 288674 18062781 ~ 18066949 (-) True LOC122346732
XM_043241041.1 mRNA downstream 73872 17668187 ~ 17669843 (-) True LOC122346430
XM_043241039.1 mRNA downstream 188476 17553503 ~ 17555239 (-) True LOC122346427
XM_043242382.1 mRNA downstream 329629 17382327 ~ 17414086 (-) True brinp3a.2
XM_043242414.1 mRNA downstream 497329 17235790 ~ 17246386 (-) True LOC122347244
XM_043242413.1 mRNA downstream 518805 17217987 ~ 17224910 (-) True LOC122347243
XM_043242965.1 mRNA upstream 219863 17993970 ~ 17996739 (-) True LOC122347583
XM_043241575.1 mRNA upstream 241131 18015238 ~ 18024042 (-) True LOC122346727
XM_043241577.1 mRNA upstream 253947 18028054 ~ 18040353 (-) True LOC122346729
XM_043241576.1 mRNA upstream 271546 18045653 ~ 18060885 (-) True LOC122346728
XM_043241953.1 mRNA upstream 305527 18079634 ~ 18083673 (-) True nit2
TU67962 other downstream 435237 17307815 ~ 17308478 (-) True G45910
TU67944 other downstream 556397 17186689 ~ 17187318 (-) True G45895
TU67937 other downstream 913507 16816640 ~ 16830208 (-) True rgs8
TU67772 other downstream 1379695 16361200 ~ 16364020 (-) False fam183a
TU67689 other downstream 1683249 16059893 ~ 16060466 (-) True G45731
TU68751 other upstream 870199 18644306 ~ 18645134 (-) True G46420
TU68756 other upstream 940067 18714174 ~ 18717488 (-) True G46423
TU68851 other upstream 1281039 19055146 ~ 19056131 (-) True G46478
XR_006251201.1 other upstream 1340954 19115061 ~ 19149730 (-) False vdrb
TU68985 other upstream 1779212 19553319 ~ 19555931 (-) False tsfm

Expression Profile