RNA id: XM_043241953.1


Basic Information

Item Value
RNA id XM_043241953.1
length 2202
RNA type mRNA
GC content 0.38
exon number 10
gene id nit2
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18079634 ~ 18083673 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgaatgtattttagtgGGCGGAGATTGTCCTACATTACTATCACTGTAACACTACTGTGCGTATTCCAAGCAGTATATCAATGTCTGGTATCTTTAAAGCAATGTCGAAGTTTCGTCTGGCTGTGGTGCAGTTACATGTGTCAAAGATTAAGGCGGACAACTTGGGAAGGGCAAAAAAACTTGTGAAGGAGGCTGCAGAACAAGGAGCAAAAGTTGTAGTCTTACCTGAGTGCTTCAACTCTCCTTATGGAACTGGGTTCTTTGCCGAGTATGCTGAGAAGATCCCAGGAGAATCCACACAGGTGTTGTCGGAGGCAGCCAAGGACTGTGGGGTCTATTTAGTTGGCGGTTCCATTCCTGAGAAGGATGGAGAAAAGCTCTTTAACACCTGCTTAGTTTTCGGACCTGATGGAAAGCTGCTTGTCAAACACAGGAAAATTCATCTTTTTGATATTGATGTACCCGGGAAAATACGGTTTCAGGAGTCTGAAACACTAAGTCCTGGAAACAGTTTATCCATGTTTGAAACACCGTTTTGTAAAGTAGGTGTGGGAATATGTTATGACATCAGGTTTGCAGAGCTGGCACAGATCTATGCTAAGAAAGGTTGCCAGCTTTTGGTATATCCTGGTGCCTTTAATATGACCACAGGTCCAGCTCATTGGGAGCTTCTGCAAAGGGGGAGGGCAGTAGATAATCAGGTATATGTGGCCACTGCTTCACCAGCAAGAGACGAGAGCGCCAGCTACGTGGCCTGGGGTCACAGCACTGTGGTTAACCCTTGGGGGGAGGTAATTGCTAAAGCTGAATCAGAGGAATCCGTTTTATATGCTGAAATAgACCTGCAGTATTTGGCTGATGTGCGCCAACAGATCCCAATCACCACACAGCGACGGAACGATCTATACAGTGTTAACAGCGTTCAGGAGGGCTGAACTTTCATTCACACAAAGCACTGCAGTGGACATTAAGTCTTGATTAAAGACTGACTGAGTCAACACTTTGTGTTAGACCAGTCAGTGTAAAGTGGGGCATCTCACAAAGAGGTTTTAATCACTGTGAATAAGTGCCTCGCGATTTGTGTTCTTTTGATGATTCTGTCACAGTGCAAATGATGTTTGGAATAGATAAAACAAGTGTTGAGAACAATGGACAGTTACGCCTGGGCAGGTGAAGTTCTCCATCAGCTTgagaaaaaacattaagcatGATAACaggatattaatatttaaagtgattcccaaatcaaaattattttcattgcaaTTGCATTAATTCCAATAgagattaaaatattatatgaaaaacatttactccattttctttttttctctccaccgATTAAGTCATTTCAAATACATAAGACAGTTCCCAGCAGAAACCAATTGCAGAACACcagagcttgtgtgtgtgtgtgtgtgtgtgtagatatacgtgctgtcaaatgattagaataaaggtttttgtttacatgtattacatgtatatacatttatagagttacaatttctattatttataaatgcatgtgtttgaatttatatatatatatatatacagaatcatgattaatcgtttgacagcactaatatatatatgaaacttTTAGGATTAATTAGGAAGTAATGTGGATTACCATAGAGCAAAGACATTTTGTGTCccttagattttttatttacaatgacTTTGATACAATTAAACTATTACACAGCGAATATAAAACACAAGTTGGTTTATATAAGAAAATGTGTGTCTTTTTGCCACATTCAGTGCTgttgaatatatttgaatttctcAACAGCACGTCTTAACTGATAGCAGACAGTATGACTAACAGTAACTCATCTGCGTTTGTGCTCCAGCCTGTCTAACTACTTCAGGTTGGACAGGTGAAGTTCTGGCAGTTGTTTTGAGCTCTTTCTCAATGACATAGCATGTTGGGGATATTTACTGTGGTCTAAAAATGTAGACGTTTAAAATGGTACAGCAAGAGTGTCAAAATACAGTTTATCTCTGTATTTTGAATATAGATATGTTCATACTCTTTGAGCTGCTTTATTCTATTGTGCTGAGTTGCAAGTCTTTTGTTTAGCCGACTGTATGGGaaaaaagaagtcttttatCTTTGTGTTTGTCTATTATCTTAAGCCGATTCATAATCTAAAATTAAACTTTGAATCACTTCCAGTCAATCACAATTAA

Function

GO:

id name namespace
GO:0006807 nitrogen compound metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0050152 omega-amidase activity molecular_function

KEGG:

id description
K13566 NIT2, yafV; omega-amidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251165.1 lncRNA downstream 12685 18062781 ~ 18066949 (-) True LOC122346732
XR_006251164.1 lncRNA downstream 35004 18040364 ~ 18044630 (-) False LOC122346731
XR_006251163.1 lncRNA downstream 35004 18042647 ~ 18044630 (-) True LOC122346731
TU68093 lncRNA downstream 256899 17822536 ~ 17822735 (-) True G46000
TU68086 lncRNA downstream 271519 17807621 ~ 17808115 (-) True G45993
TU68243 lncRNA upstream 13395 18097068 ~ 18097490 (-) True G46074
TU68269 lncRNA upstream 33683 18117356 ~ 18117582 (-) True G46092
TU68349 lncRNA upstream 166261 18249934 ~ 18250635 (-) True G46140
TU68375 lncRNA upstream 249170 18332843 ~ 18333266 (-) True G46160
TU68387 lncRNA upstream 276006 18359679 ~ 18359981 (-) True G46172
XM_043241576.1 mRNA downstream 18749 18045653 ~ 18060885 (-) True LOC122346728
XM_043241577.1 mRNA downstream 39281 18028054 ~ 18040353 (-) True LOC122346729
XM_043241575.1 mRNA downstream 55592 18015238 ~ 18024042 (-) True LOC122346727
XM_043242965.1 mRNA downstream 82895 17993970 ~ 17996739 (-) True LOC122347583
XM_043241933.1 mRNA downstream 305529 17743715 ~ 17774105 (-) False opa1
XM_043241951.1 mRNA upstream 4387 18088060 ~ 18090531 (-) True si:dkey-66a8.7
XM_043241166.1 mRNA upstream 7442 18091115 ~ 18096535 (-) True plcxd1
XM_043242524.1 mRNA upstream 16191 18099864 ~ 18109115 (-) False jade3
XM_043242525.1 mRNA upstream 16191 18099864 ~ 18108841 (-) True jade3
XM_043242642.1 mRNA upstream 26973 18110646 ~ 18116377 (-) True rp2
XR_006251188.1 other downstream 305527 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other downstream 305527 17743715 ~ 17774107 (-) True opa1
TU67962 other downstream 771156 17307815 ~ 17308478 (-) True G45910
TU67944 other downstream 892316 17186689 ~ 17187318 (-) True G45895
TU67937 other downstream 1249426 16816640 ~ 16830208 (-) True rgs8
TU68751 other upstream 560633 18644306 ~ 18645134 (-) True G46420
TU68756 other upstream 630501 18714174 ~ 18717488 (-) True G46423
TU68851 other upstream 971473 19055146 ~ 19056131 (-) True G46478
XR_006251201.1 other upstream 1031388 19115061 ~ 19149730 (-) False vdrb
TU68985 other upstream 1469646 19553319 ~ 19555931 (-) False tsfm

Expression Profile