RNA id: XM_043241999.1


Basic Information

Item Value
RNA id XM_043241999.1
length 2472
RNA type mRNA
GC content 0.50
exon number 5
gene id ip6k2a
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20949489 ~ 20956207 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCGGCGAGAGCTTACGGTGTCAGTAGAAGAGCTTCCGAGAAAGCGGTCGACACGCGGGCCTTTAAAGCTGCTCTTTCTCGATTAAAATCCCCTGAATTTCGCCCTTAGAACAGCGAGGAGAAAATACGAACTAGATTATTCGTGTCGTAAAAGAAAGGATTGAATCAAAACACAGGGCTGTGTTCTTTCTTCTGTCGTGTCGCCTTTCTTCCTCCTTcctgtttcttttgtttatgtCCTGCAGTGTTCTGCTGCACGGCGGAGAATACACCGTTGACCGCGAATAAACGATAGAGCGAATCGAGATAAacgaaagacagaaaaaaaactattacggCCGTTTCGTCCCTTTTCATCCGTCTACACGTCTGTGGTGTCCAGCTGGACCAGGAGCGAGAGTCTAATGCCCCCGGAGGATGAGCCCAGCCATCGAGGGGATGCAGACAGAGCCGCAGGGGTTTTTGGGGAAAGGGGTGCTCCTTGAGCCCTTTGTGCACCAGGTAGGGGGACACTCGTGTGTGCTCCGCTTTGGGGAGCAGACGATATGCAAGCCCCTCATCCCCCGGGAGCACCAGTTTTACAAGAGCCTCCCTGCGGCTATGCGGAAGTTCACACCGCAATATAGAGGTGTGGTGTCGGTGAGTTtcgaggaggatgaggaaggaAATCTGTGTCTTATTATGTACCCTCTGCACAGTGAGCTTGGGGACTTGGAAAATGTGGACCCCTCGGCAGATCTGGAacccaacaacaaaataaaatgggtCAGTAAGATGCTGCTGGACAATGAGGGCTACAGCAAGGACCGGTCCAGACACTCTCGGAAGGACAAGGACAAGAGTGTCAAACGTGAGGAAGAGCTGGAGTGGCTCAAGCAGGCCGAGGTGTTCTACTACAGCCTGGAGAGGAGCAATGCTGCTGGCCCTCAGCTCAAGCACAACCCCTGGAGCCTCAAGTGCCACCAACAACACCTGCAGAGAATGAAGGAGAACGCGAAACACCGCAACCAATACAAATTCATCCTGTTGGAGAACCTGACGTGGCGCTACACAGTCCCATGCGTGCTTGATCTGAAGATGGGCACAAGGCAGCATGGCGACGACGCCTCTGAAGAGAAGAAGGCCGTCCAGATCCGCAAGTGTCAGCAAAGTACATCCGCCAGCATCGGAGTGCGCCTCTGCGGCATGCAGGTCTACCATTCAGACACAGGGCAGCTCATGTTCATGAACAAGTACCACGGCCGTAAGCTGACCTTGTCTGGCTTCAAAGAGGCCATCTTTCAGTTCTTCCACGACGGGAGGCGCCTGAGACGCGAGCTCCTGTCTCCGGTGCTGCGGAGGCTCCGAGACATGCAGGCGGCCCTGGAGGCCTGCGAAAGCTACCGCTTTTACTCCAGTTCGCTCTTGATAATATACGACGGAGACCCTCCCCGACCTCGCCACTCCGCAGAGGATGGGCTTTCggaagaggaagaggacgaggaggaggaggaggatgaggaagaagaggaggaggaggaggaagaagaagaggagggtGGTGCTTTTGGATTCCCTCATGGTGCAGGTGCGGCCAGCAGCGGTAGCAACAGCGGTGCTTGTGGCGGCTCCGGCGGCTCTGCTGTGGTGCGACGCATGGCCAGACCAGACGGCCCGGTGGTGGACGTTCGCATGATTGACTTTGCTCACACCACGTGTCGGCACTACGGCGAGGACAGTGTAGTCCACGAAGGCCAGGATAGCGGTTACATCTTCGGATTGGAGAACCTCATCACCATCATCTCGCAACTAGAAGACCACAGCACAGATTAAACCCCAGCTTTGATTAAACCAGCATGGCGTTGAAACGggaaaatgtttctttctctttcttctctttttcttttgagacgTTCAGCTCTCAAAGCTCCACCTGTTcggttgtttgtttgttttttttttgtgttgtagaGGATTAAAAAGGGTCAAGAAGCTAACGTCAAGTCGTGCTCCCTCTGTGTTCAGTAGCTTTACTCACTTCCCCTGATGTACTGTTACAGTGTTGCTGCCGTTTCCCGTTTTGTTCTATTTATTGAGGAATGGTTATTTACCGAAAAGGACCTAACTCATTCCTTGACAAGGTTCTGGAACTTTGAGTAGCTTGAGAGCACTTCTTGTTGGATGGTGGTGAAAAGAAAGACTGTTAACGCTCTACAGCACCCTCCCCTTGCACCTTTACCCATCGTCCAGAGACAACTATATTCAGATAGTTAGTTGACATACAGAGACTAtaataaagctttatttatttgtcatatttcctaaataaactaaaaagaaaaaaagtgaatggaGCTTCGAAAACTACATTCCATGTTATTAATGTTacaataatgatattaataaatattattatttgacatGTTCAGATACCTCTATCTTATATCTGTTGTACACGGTATGTTGGaggaaaaataaagagtttgtGTTAAA

Function

GO:

id name namespace
GO:0007227 signal transduction downstream of smoothened biological_process
GO:0045880 positive regulation of smoothened signaling pathway biological_process
GO:0016310 phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0008440 inositol-1,4,5-trisphosphate 3-kinase activity molecular_function

KEGG:

id description
K07756 IP6K, IHPK; inositol-hexakisphosphate 5-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69697 lncRNA downstream 13835 20935422 ~ 20935654 (-) True G47004
TU69594 lncRNA downstream 242640 20612949 ~ 20706849 (-) False G46934
TU69600 lncRNA downstream 243446 20564351 ~ 20706043 (-) True G46934
XR_006251191.1 lncRNA upstream 181266 21137473 ~ 21142766 (-) True LOC122347045
TU69869 lncRNA upstream 372225 21328432 ~ 21329671 (-) True G47122
TU69891 lncRNA upstream 394064 21350271 ~ 21350507 (-) False mdfic2
TU70063 lncRNA upstream 646082 21602289 ~ 21663492 (-) True G47262
TU70090 lncRNA upstream 844071 21800278 ~ 21801032 (-) True G47283
XM_043241998.1 mRNA downstream 7590 20936075 ~ 20941899 (-) True sec61a1l
XM_043241556.1 mRNA downstream 14296 20932061 ~ 20935193 (-) True emc3
XM_043241555.1 mRNA downstream 14310 20932061 ~ 20935179 (-) False emc3
XM_043241554.1 mRNA downstream 18175 20918338 ~ 20931314 (-) True usp4
XM_043241017.1 mRNA downstream 34211 20900369 ~ 20915278 (-) False fancd2
XM_043241993.1 mRNA upstream 189458 21145665 ~ 21153157 (-) False edem1
XM_043241992.1 mRNA upstream 189458 21145665 ~ 21153157 (-) True edem1
XM_043242019.1 mRNA upstream 197617 21153824 ~ 21161171 (-) True arl8ba
XM_043242014.1 mRNA upstream 205425 21161632 ~ 21164185 (-) False tnfrsf18
XM_043242013.1 mRNA upstream 205425 21161632 ~ 21164185 (-) True tnfrsf18
TU69571 other downstream 417655 20529179 ~ 20531834 (-) True G46926
TU69405 other downstream 783210 20161440 ~ 20166279 (-) True G46840
XR_006251194.1 other downstream 847031 20096389 ~ 20102458 (-) False srsf3a
TU69304 other downstream 1102091 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 1282983 19666434 ~ 19666506 (-) True trnaf-gaa
XR_006251209.1 other upstream 1783765 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 1783765 22739972 ~ 22750947 (-) False tardbpb
XR_006251208.1 other upstream 1783765 22739972 ~ 22750947 (-) False tardbpb
XR_006251206.1 other upstream 1783765 22739972 ~ 22750947 (-) False tardbpb
XR_006251205.1 other upstream 1788055 22744262 ~ 22750947 (-) True tardbpb

Expression Profile