RNA id: XM_043242019.1


Basic Information

Item Value
RNA id XM_043242019.1
length 1580
RNA type mRNA
GC content 0.43
exon number 7
gene id arl8ba
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 21153824 ~ 21161171 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAAGCGGGTCAGTTCCTCCCAAACACTACGTTACGATTCTAGTGGTGAAAAACATTGCAAACAACCATAACCTAAACAGACCTGTTTAATCCGGCATCAAAATGTTGGCCCTCATTAACCGCCTCTTGGACTGGTTTAAGTCTCTCTTCTGGAAGGAAGAAATGGAGTTAACCCTCGTCGGGCTGCAGTATTCGGGGAAAACGACGTTTGTTAACGTAATCGCGTCAGGCCAGTTCAGCGAAGACATGATTCCAACTGTCGGGTTCAACATGAGGAAGGTCACAAAAGGCAATGTCACCATCAAGATCTGGGATATAGGAGGTCAGCCGAGGTTCAGGAGCATGTGGGAGCGATACTGTCGTGGGGTGAACGCAATAGTgTACATGGTGGACGCAGCAGACCGGGAGAAGGTTGAAGCTTCCAGAAATGAGCTGCACAATCTTTTAGACAAGCCACAGTTACAAGGAATCCCTgtgttgGTGCTCGGGAATAAGAGAGATCTACCTAATGCTTTGGATGAGAAACAGctaattgaaaaaatGAACCTGGCTGCTATTCAAGATAGGGAGATCTGCTGCTACTCTATTTCCTGCAAAGAGAAAGATAACATTGACATTACACTTCAATGGCTAATCCAGCACTCAAAGTCAAGAAGAAGCTGAAAGTGTCTTCAGAAGGTCCAAGTTTATCCGCTGCCATGTTACTCTTACACCACATCTTGCTCACTTTGTGAAACTGTACAGTTCTCCATACCGCCCCCTCACACTACCCTGCTCGTCTGTTCCCATAATTCTTCACAAGCTCCTCCCAACTGCATCAGTCATGTCAAAGATACATCAGTCGCTAAAAGACGCTAGCCTGCAGAATGAGTTCCTCCACCTCTTACAGCCTGCTGTCAGATGAACATTATGGATTCATGGTTTTGCAAATCCCAGCAGCTCCGGTGATCTCCACTTGGGGTTTCCCcgaacaaatgtatttaaaaactgagAAGAGTTCAACTTTAATATCGTGTTCTGCCTTTTTCCTCCAGTCTGTCAGGTTATGCTCTTGAGAGCGTGTAATATTGTTGGGactgttgcttttattttttttcctttttctcttttcccccAAACTGTCTGTTGAGAAACCCGTAATCTTTAAATACGAGGAGCAGTCCAGTAAATAAACAGTTCAAATGATGATTCAGAGAGATTTTTACAGAAATGAGTGTAAGTATATTTGAGaggatgaatgttttgttgGTAAAGGTTTTCATTTAGCTCAATGATGTCTTTGCATCCAGTTCGTGAGCTGAGAGAGAGCGAGTAGGTGAAGTTAAAGTGCCTTGTGCAGTGTATCTGTCCCTCAAGATAAACAGTATACCGGGTGTGCCTGCCTGGAACTAGATTGGATAAAGACAGCTTACTTTGAACTGCAAGAACAGAAGGCACGCTTTTTAAGGTAGATTATTGTACTGTTGTCATTATCAACTAAATATTCGTGAAAAGAGGCAAATGTTGGAAACCCCACTATTATCAATGCACTTTTGTAAATATGATGAACCAATAAATAGATTGTCAACATATAGGAGGAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007059 chromosome segregation biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0005819 spindle cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07955 ARL8; ADP-ribosylation factor-like protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251191.1 lncRNA downstream 11058 21137473 ~ 21142766 (-) True LOC122347045
TU69697 lncRNA downstream 218170 20935422 ~ 20935654 (-) True G47004
TU69594 lncRNA downstream 446975 20612949 ~ 20706849 (-) False G46934
TU69607 lncRNA downstream 447781 20564351 ~ 20706043 (-) False G46934
TU69869 lncRNA upstream 167261 21328432 ~ 21329671 (-) True G47122
TU69891 lncRNA upstream 189100 21350271 ~ 21350507 (-) False mdfic2
TU70063 lncRNA upstream 441118 21602289 ~ 21663492 (-) True G47262
TU70090 lncRNA upstream 639107 21800278 ~ 21801032 (-) True G47283
TU70107 lncRNA upstream 843609 22004780 ~ 22004982 (-) True G47297
XM_043241993.1 mRNA downstream 667 21145665 ~ 21153157 (-) False edem1
XM_043241992.1 mRNA downstream 667 21145665 ~ 21153157 (-) True edem1
XM_043241999.1 mRNA downstream 197617 20949489 ~ 20956207 (-) True ip6k2a
XM_043241998.1 mRNA downstream 211925 20936075 ~ 20941899 (-) True sec61a1l
XM_043241556.1 mRNA downstream 218631 20932061 ~ 20935193 (-) True emc3
XM_043242014.1 mRNA upstream 461 21161632 ~ 21164185 (-) False tnfrsf18
XM_043242013.1 mRNA upstream 461 21161632 ~ 21164185 (-) True tnfrsf18
XM_043242017.1 mRNA upstream 8916 21170087 ~ 21176003 (-) False si:ch73-361p23.3
XM_043242016.1 mRNA upstream 8916 21170087 ~ 21176003 (-) False si:ch73-361p23.3
XM_043242015.1 mRNA upstream 8916 21170087 ~ 21176003 (-) True si:ch73-361p23.3
TU69571 other downstream 621990 20529179 ~ 20531834 (-) True G46926
TU69405 other downstream 987545 20161440 ~ 20166279 (-) True G46840
XR_006251194.1 other downstream 1051366 20096389 ~ 20102458 (-) False srsf3a
TU69304 other downstream 1306426 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 1487318 19666434 ~ 19666506 (-) True trnaf-gaa
XR_006251209.1 other upstream 1578801 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 1578801 22739972 ~ 22750947 (-) False tardbpb
XR_006251208.1 other upstream 1578801 22739972 ~ 22750947 (-) False tardbpb
XR_006251206.1 other upstream 1578801 22739972 ~ 22750947 (-) False tardbpb
XR_006251205.1 other upstream 1583091 22744262 ~ 22750947 (-) True tardbpb

Expression Profile