RNA id: XM_043242047.1


Basic Information

Item Value
RNA id XM_043242047.1
length 768
RNA type mRNA
GC content 0.41
exon number 4
gene id sumo2a
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10395173 ~ 10398631 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTTTAAATGTCGTCATGTCCGGCGGCATTACGCGCTCTGAGACAGAGGCAGTCATGGCAGACGAGAAGCCGAAGgaGGGTGTGAAAACGGAGAACGACCACATAAACCTGAAAGTAGCTGGGCAGGACGGCTCAGTGGTTCAGTTCAAAATCAAGAGGCACACACCCCTCAGCAAACTAATGAAAGCATATTGTGAGAGACAGGGGCTATCAATGCGGCAGATTCGGTTCCGGTTTGATGGGCAGCCAATTAATGAGACCGACACTCCATCTCAATTGGAAATGGAGGATGAGGATACCATTGATGTATTTCAGCAACAGACAGGGGGCCTGATGTAAATAACAACTACCTCTCCCCAACATCATCACAGTCCTCCCTGTTtcctgtttcctttttttttgtttgttttttttaagtgtaatctGACCGCTCTCCTCATTACCAGAAGCTTGTCTACAATGGCCGTCAGCTCTCGCCAATCAGAAGAATGGTGTTGTAAACTTATTGATGCATTTCATCAGATGTGGACCTAAGAGAGTCAAGactaaaatgcttttatcagatcagatttttttttttttttggtagataGAATTTTGGTCCGTGTCAGTGCTAaagttctgttttgtttgctcCGAGCCATTgggctttttatatatattttatatgtcgACGTATTTCTCTTTTGTACTGTTTTATTCAGTAACTTGTGTTGTGAATTGAAATGTTGATACGATTTTGTGttggaataaaatgttttacaaaa

Function

GO:

id name namespace
GO:0016925 protein sumoylation biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12160 SUMO, SMT3; small ubiquitin-related modifier

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65484 lncRNA downstream 6731 10388044 ~ 10388442 (-) True G44213
TU65481 lncRNA downstream 18595 10376140 ~ 10376578 (-) True G44210
TU65480 lncRNA downstream 21605 10373170 ~ 10373568 (-) True G44209
TU65479 lncRNA downstream 22321 10372640 ~ 10372852 (-) True G44208
TU65477 lncRNA downstream 38859 10356014 ~ 10356314 (-) False LOC122347367
TU65642 lncRNA upstream 110057 10508688 ~ 10508796 (-) False usp43a
TU65650 lncRNA upstream 180358 10578989 ~ 10579846 (-) False ntn1a
TU65651 lncRNA upstream 182778 10581409 ~ 10582029 (-) True G44338
TU65652 lncRNA upstream 183402 10582033 ~ 10582284 (-) True G44339
TU65655 lncRNA upstream 247502 10646133 ~ 10653370 (-) True G44341
XM_043241196.1 mRNA downstream 957 10390047 ~ 10394216 (-) True jpt1a
XM_043242153.1 mRNA downstream 11090 10377331 ~ 10384083 (-) True zgc:174863
XM_043242568.1 mRNA downstream 36323 10355877 ~ 10358850 (-) True LOC122347367
XM_043241894.1 mRNA downstream 60132 10296004 ~ 10335041 (-) True sept9b
XM_043242050.1 mRNA upstream 714 10399345 ~ 10406457 (-) False gga3a
XM_043242048.1 mRNA upstream 714 10399345 ~ 10406457 (-) True gga3a
XM_043242052.1 mRNA upstream 714 10399345 ~ 10406452 (-) False gga3a
XM_043242051.1 mRNA upstream 714 10399345 ~ 10406452 (-) False gga3a
XM_043242053.1 mRNA upstream 714 10399345 ~ 10405628 (-) False gga3a
TU65385 other downstream 250026 10141611 ~ 10145147 (-) False cd7al
TU65247 other downstream 367538 10025578 ~ 10027635 (-) False c6h17orf67
TU65030 other downstream 1122868 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 1124251 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 1127849 9266002 ~ 9267324 (-) True G43896
TU65678 other upstream 311414 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 656404 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 656404 11055035 ~ 11069457 (-) False brdt
unassigned_transcript_1087 other upstream 1573849 11972480 ~ 11972551 (-) True trnag-ucc_1
unassigned_transcript_1088 other upstream 1574078 11972709 ~ 11972780 (-) True trnap-ugg_4

Expression Profile