RNA id: XM_043242051.1


Basic Information

Item Value
RNA id XM_043242051.1
length 3306
RNA type mRNA
GC content 0.44
exon number 17
gene id gga3a
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10399345 ~ 10406457 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGGGAACACCACACGAGTTCCTTCCTTTGGGAACACCACACGCCACTGATTATCACACAGAAGCACGAGAACGTCACATGACGGGAATGTGTAGCTCGCTTCAGTCAGCTGCGCTGCTGTGTGATCATGGCGGATCCGGAAGGAGAGTCACTCGAGTCCTGGCTGAACAAAGCCACCAATCCTTCTAACAGACAGGAGGAATGGGAGTACATCATTGGGTTCTGTGACCAAATCAATAAAGAACTTGAGGGCCCACAGATCTCGGTCAGATTATTAGCACATAAGATCCAGTCACCACAGGACTGGGAATCTTTACAGGCACTAACTGTTTTAGAAGCTTGCATGAAGAACTGTGGGCGAAGATTTCATAATGAAGTTGGGAAATTtcgatttttaaatgaactcatCAAAATAGTTTCACCAAagTATCTGGGAGAGCGAGTATCTGAACGAGTGAAGACTAAAGTAATAGAGTTGCTTTACAGCTGGTCAGTTGCTTTACCAGACGAGGCAAAGATTATAGAGGCCTATCAAATGCTAAAGAAGCAAGGCATTGTAGCAGAGGACCCAGAGGTTCCTGTGGACAAGACCCTGGTTCCCTCGCCAAAGCTGAAGAATCCAGTGTTTGACAATGAGGAAAAGAGTAAGCGTCTTGCAGAACttcttaaaagtaaaaagcCAGAGGATCTTCAAGAAGCCAACCGCATTATCAAGAACATGGTCAAAGAGGATGAGGCTCTCCAGCAGAAAGTCTCCCATCGTGCCGGCACCCTAGAGGAAGTAAACAACAGTGTGAAGCTCCTTAATGAGATGCTAAGTCACTTTAAAAAAGAGGAGTCAACACAGGAAGACAAAGAACTACTAAAAGATCTGTATAATGACTGTGACAAACTTAGAACTGCTGTCTTCAGACTCGCCACCGAGACGGACGATGACGACTGTGCCTTAGGTGATATTTTGCACGCTAGTGATGATCTCTCGCGAGTCATCAACTCTTATAAAAAGATTGTTGAAGGACAGACCGTTGTGATTGACATACCAGGATCGACGGCTTCTGAACGCACCACTGACAGAACCTCTTCTGAAATTCTGATTGATTTGGCTGATTTGGACTCTGGAACCCCTTCAccgcttaaaaatgttttgccttCTCCGAAGCACTCCGATTCTCTAGCAGCCGACCTCCTCACACTGACTCCTTCAGTTGGAGCTCAGCCTTCCTCTTCCAACACATCCTCTGGATCATCAAGTTTCCAAACCAGTCCTCCATCAAGCCAGCTTCCCAGCAGCTTCTCTCTTCTAGATGACGAACTTGGTTCATTAGgCCTTACTAATCTGGACTCAAACTTAAGCAAGTCAGCAGAAAAGAATATAAAAGAAGCCCAAAGCAATCAATGGATTTCTTCACAAACTACCAAACCAGCGATTGACCTCCTCTGCAGCTCTTCTCCATTAACTCCTCCCGTCTCCACAGCGCCACCTGCCTCTGAAGCTACCTCAGTCTTTGAAAACTCCTTCCAACAAAGCTGCAGAGATTTTGCTATGCTGGACCTGGACAAGACCAATAGCAGCCAGTCCGATTATTCAAGCTTGGAAGACAGAGAAGTTAGAGCTGGAGAAGAGAGCGTCCATCCTGCATTAGCCACGTTCAGTTTGCCCGCTGGAATAACACCAGTGCCTTCTGCTTTAACCTCTGCCAAACCTCAGAGCTTTGCGCCGGACAGCCCTCTCTTCAGATCCCTCTCTCCAACATTACCCACCAGTCATTCCCCCTCAGGCTCGGATGTCTCCCTGACCGGTGTCTTTGTCCCACTGGAGGCCATTAAACCAAGTAAGGAGTGTCCAGTGACGGCCTGTGATAAGGATGGTGTTCGTGTGCTGCTGCACTTTGCCACCGACCACCCGCCTGCTCGCCCTGATGTTCTGGTGGTCGTGGTGTCCATGCTGAACACGGCACCACTGTTGGTGAAGAACGTAGTGCTTCAGGTTGCCGTGCCAAAGTCTATGAAAGTGAAGCTGCAGCCCCCTTCTGGGACAGAAATGACCCCGTTTAACCCCTTCATGCCCCCCAGTTCCATAACTCAGATCATGTTGCTGGCTAACCCACAGAAGGAGAAAGTGAGAATGAGGTACAAGCTGACCTTCGTCCTTGGAGATCGACAGGTCACAGAGTCTGGAGAGATGGACAAGTTCCCTCCAGTGGAAAAATGGGGTCATTTGTAGCCGTGTAAGCATTACTACTTGTGAAGACAAATGATAAtctcaagtgtgtgtgtaagtgcatGGATGAGCTATCAGCAATGAgtgatataatgatataatgtcCAGGACGTTACCTTTGACACACTGGGTGTTAGACTTGTGAATCCCAATCTCTGAGTAATCCCACAAATGTCTTGATGTATTGGTCTTGGTCATTAGGTACTGTtgtcattaatataaatacGTTGCCTATGAGCATAATGGGTCATTTTATTGTTAGCCACAACTAAACTATCCAACTCATACCTCACCCTAAAAGCAGTGGAAGGGTAATGTGATAGCACTGGACATGTTACATCTCTTCTTTCTATGTGCTTTCCTTGATGTGATGCATTAGTTGTGCTTTGtgagttttattaatgtttttccagaattttacatatttattttattactatccAGACTTGTGGTGTTTGACACGGCTAGTTTAAGGCCAAATTCAATTAGTTTTACATCAGATAACAGCCCCACAAAGATGTGTGTGAAAGATGGCGCAAAGCATACTTCGACTTCTGTGTTTTTGGATGAATGCAATGTATCGTTTCGCTTTATTTGCTTTAACGCAGTCGGAAGGAATCACTTATATAACGTTTTCTGATTTCTGATGTACATAATTGGAGAGGaagttgttttgatgttttggaAACTTTACATTTTGGGGTTATTAAAGATGccattatttatattctaaacaTTGACTGTTAAAATTGAAGTGTATTGTTACAGAAGGAAGGAAcgattttttctttctttaggtcagccttttttgctttgctttttgttttacagcagTTGCCTCAGTATTGTTTTGCTTtactggatgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagttgaggaaattcatattaatagaatttactttatttcaaagAAGAGCTTCATGAATCTTCCAATGATGCGGTTGTTTTTAGATTAAAGTAAAATTTGCAATTCAACACAATGTATACAgttttaaagacaaataaatatattgttttgaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0005802 trans-Golgi network cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65484 lncRNA downstream 10903 10388044 ~ 10388442 (-) True G44213
TU65481 lncRNA downstream 22767 10376140 ~ 10376578 (-) True G44210
TU65480 lncRNA downstream 25777 10373170 ~ 10373568 (-) True G44209
TU65479 lncRNA downstream 26493 10372640 ~ 10372852 (-) True G44208
TU65477 lncRNA downstream 43031 10356014 ~ 10356314 (-) False LOC122347367
TU65642 lncRNA upstream 102236 10508688 ~ 10508796 (-) False usp43a
TU65650 lncRNA upstream 172537 10578989 ~ 10579846 (-) False ntn1a
TU65651 lncRNA upstream 174957 10581409 ~ 10582029 (-) True G44338
TU65652 lncRNA upstream 175581 10582033 ~ 10582284 (-) True G44339
TU65655 lncRNA upstream 239681 10646133 ~ 10653370 (-) True G44341
XM_043242047.1 mRNA downstream 714 10395173 ~ 10398631 (-) True sumo2a
XM_043241196.1 mRNA downstream 5129 10390047 ~ 10394216 (-) True jpt1a
XM_043242153.1 mRNA downstream 15262 10377331 ~ 10384083 (-) True zgc:174863
XM_043242568.1 mRNA downstream 40495 10355877 ~ 10358850 (-) True LOC122347367
XM_043241897.1 mRNA downstream 91664 10296004 ~ 10307681 (-) False sept9b
XM_043242109.1 mRNA upstream 2456 10408908 ~ 10411264 (-) True mif4gda
XM_043242113.1 mRNA upstream 5249 10411701 ~ 10427410 (-) True grb2a
XM_043242111.1 mRNA upstream 5249 10411701 ~ 10427396 (-) False grb2a
XM_043242112.1 mRNA upstream 5249 10411701 ~ 10426992 (-) False grb2a
XM_043241622.1 mRNA upstream 27752 10434204 ~ 10509003 (-) False usp43a
TU65385 other downstream 254198 10141611 ~ 10145147 (-) False cd7al
TU65247 other downstream 371710 10025578 ~ 10027635 (-) False c6h17orf67
TU65030 other downstream 1127040 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 1128423 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 1132021 9266002 ~ 9267324 (-) True G43896
TU65678 other upstream 303593 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 648583 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 648583 11055035 ~ 11069457 (-) False brdt
unassigned_transcript_1087 other upstream 1566028 11972480 ~ 11972551 (-) True trnag-ucc_1
unassigned_transcript_1088 other upstream 1566257 11972709 ~ 11972780 (-) True trnap-ugg_4

Expression Profile