RNA id: XM_043242114.1


Basic Information

Item Value
RNA id XM_043242114.1
length 2196
RNA type mRNA
GC content 0.44
exon number 13
gene id efcab7
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14770982 ~ 14780729 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGTTTACACACAGAAGCCATGGCAATCAGACTCGATGGAGAGCGACACTACCAACCATAAAATAGCCCACGGACTCGCCTCTCTAGCTCTCTGCTCTTGATATTTGCTCTTGATAAACATGCTTTGATATTTCGCTTGCATATTTCATGTCTTTTCATAATGCAGCGCTCAGAGGAAGAGAGGTTTTACGTGAAGTGCAGGGCTGCTTATCTGTCTGTGTTCAGATCCAGCTTGGTTAATATGACTTCAAAAGATCAGCTGTGCACCGTACTTCAGCAATCGGGAACAAATCCATCACAGAAAGCTTTAGACAAATATTGGCCCCCAGGAACCAAGAAGTTGAATTTTGATGACTTTTGTGAAATACTTAAGAAGGAAAAGCCAGCAGAACCAGACCAGCTTATGAGAATTTTCAAGAAATTTGATGTAAATTGTGATGGATATATCTCACACGAAGAGCTCAGCAGAATCCTTACTTCATCAGGTGAAAAAATGTCACCTAAGGAAGTGGATGAAATCTTTTCCTTAGCGGATGTCAACAAAGATGGGAAATTAGACTATGCAGAGTTCTGCAGGCTTCTTGAGTCTACAGCAGAGAAGTGTCAGACCGCAGCACTGAAGAAGCTTGAGGCCGATGCCAAACTGAAGAGGCAGAACTTTGGCAACCAGTTGGACAACTCTCCACAGAGCTCAGAGTCCCAACCTGAGCTTCCAGCTTCAGAGACACAGCCCAGAACAGAGCTAGAAACCACACAGAGGAAAGATAGTCGCTCATCATCCAGACCATCCTCGGCTCGTAGTCGTCGGTCATCTTTATCCACAGTCATCACCATGGGCGCTTGCAGCACTAAGAGTAGCAGGCTGGTGGAGCCCACATCTCTACAGGAGTGGCATCGGACTCTCATGAGAGGTTGTTTTTATCTGGAAGAAGATGGAACGATTGTTTCTCTTCAGTATCGCCTGGTTATACCGGAGACTACCAGCGTGTGTCTGGCCATACGACCCCTCAACCTTAGCCCTGAGAAGCCTTCGCCGTGGATGTGTGTGGACACAGCTGTCTATGTGGTGACGGGGAATGAGACCAAAGAAGATTCAAATTTGGTTTGCTTCACTGATTTAAGGGATAAGGAGAGATTTCTGTGGAGAGGAGAGCTCAGTGCCGGCTCATATCTGCTCTTGCCCTTCACCACTGGCTGCAGACtgatgaagaggatgaggaagacTTCCACTAAAGCTGCTCAGCTAGTCAACCGCACCCAGTCTGGAGAGCTGGAGCTAACCAAAGAGTTCAAGGCGGCATTGTCTGACATCTTTGAAGTGATTGATTTGGACGGCAGCGGTCTGCTGAGTCTAGAGGAGTACAACTTCTTTGAACAGAGAACCAGTGGAGAGAAATGCGATGAGGACTCCTGGGCCATCTGCAAAGAGAACTTcgaaacaaagaaaaatgagTTAACCAGACAAGGTTTCCTGGAGCTCAACCTGATGGAAGCAAATGATCGTGAGGGAGATCCCAGGGATTTGTGGCTCACCCTGGAAGCCATGGGATACAACCACAGTTTGGAGATGGTGGAGGCCTGTCCGTTTGTCATTGAAGTCTACTGTGAAGATGTCGAGGCAACTCTTCAGGCAGTTCATTTGGATTCTGGGATCAAGATGTTGAATTCAGCTGTACAGAGGTCCATCACGTCAAAAGCAGAAGCCAGATCTCTTAAAGGTCATGAGAATGTCTTGATTTATACATACAAAGGAGAAAGCAGGATTTCATCAGTCATTGCCAATAAGTCCAATCAGAAGGTGACGGTGCACATCAACAGTGAACAAAGCAAGAACTGTGTGAGCAGCAGGGGCATGAGTGTGTTTGCTGTGGAGGTTCCAGCGAGGACTAAGATGGTATGTCAGCACGTCATGGCTTTAAATGATCAACAGGAGTGGACTTACAACTGTGTTGAGACCATCATACCAAGTTTGTAATTGCCTCCGTAACAGAAGGAACTTATTATAAGACAACAAATAATGTAGctcttgtaaaataaatatgttttgtttagctACAATGACCATTGTAAAGATGTTTTATAAAAGCTTTCAAAAGGtatcatgtttgttttgctgtttctgTAAGCATTATTGTATGTTATTAGTTACATGcatgatattgatgttttttttaaataaagcaattgttttcatt

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23852 EFCAB7; EF-hand calcium-binding domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251130.1 lncRNA downstream 114951 14651716 ~ 14656031 (-) False LOC122346442
XR_006251129.1 lncRNA downstream 114951 14651716 ~ 14656031 (-) True LOC122346442
TU67022 lncRNA downstream 276960 14493121 ~ 14494022 (-) True G45277
TU67012 lncRNA downstream 491956 14263867 ~ 14279026 (-) False LOC122346673
TU67118 lncRNA upstream 124773 14905502 ~ 14905708 (-) True G45355
TU67394 lncRNA upstream 321961 15102690 ~ 15154616 (-) True G45532
TU67412 lncRNA upstream 404423 15185152 ~ 15239640 (-) False G45543
TU67413 lncRNA upstream 404423 15185152 ~ 15213632 (-) True G45543
TU67416 lncRNA upstream 404423 15185152 ~ 15221025 (-) False G45543
XM_043242115.1 mRNA downstream 1085 14762711 ~ 14769897 (-) True pgm1
XM_043242953.1 mRNA downstream 13030 14657884 ~ 14757952 (-) True ror1
XM_043242954.1 mRNA downstream 78751 14657884 ~ 14692231 (-) False ror1
XM_043242887.1 mRNA downstream 127994 14587270 ~ 14642988 (-) True cachd1
XM_043240967.1 mRNA downstream 187981 14523682 ~ 14583001 (-) False raver2
XM_043242738.1 mRNA upstream 8947 14789676 ~ 14801854 (-) True alg6
XM_043242739.1 mRNA upstream 8947 14789676 ~ 14801823 (-) False alg6
XM_043242976.1 mRNA upstream 24575 14805304 ~ 14812624 (-) True foxd3
XM_043242692.1 mRNA upstream 126638 14907367 ~ 14914995 (-) True atg4c
XM_043241194.1 mRNA upstream 143410 14924139 ~ 14929125 (-) True angptl3
TU66983 other downstream 577816 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 1089708 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 1303043 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 1303417 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 1303756 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67455 other upstream 548238 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 823181 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1278239 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1279164 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 1580471 16361200 ~ 16364020 (-) False fam183a

Expression Profile