RNA id: XM_043242115.1


Basic Information

Item Value
RNA id XM_043242115.1
length 2706
RNA type mRNA
GC content 0.44
exon number 11
gene id pgm1
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14762711 ~ 14769897 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACGTGGTGAACGCACATCCCGCTGGGCACCCGGATAGTGACAGGCGCTGACCGCTGCTGCAACATGGTGAAAATTACAGCTATTAAGACGAAACCGTACACCGACCAAAAACCCGGAACCAGCGGTTTGAGAAAGAGGGTGACTGTATTCCAGCAGAACCAGCATTATGCGGAGAATTTCATCCAGAGTATCATTTCCACCATTGACCCTGCTCAGAGGCAGGAGAGCACCCTGGTAGTGGGAGGAGATGGACGCTTCTTCATGAAAGACGCTATTCAGCTGATCATCCAGATTTCTGCAGCTAATGGGATTGGCGGTCTGGTCATTGGTCAGAATGGGATTATGTCAACACCTGCTGTTTCCTGTGTGATCCGAAAAATCAAAGCCGTCGGGGGGATCATCCTGACAGCCAGTCACAACCCTGGCGGCCCCAATGGAGACTTTGGCATCAAGTTCAACATATCTAGTGGAGGTCCTGCACCAGAAGGCATCACAGACAAAATCTTTCAGATCAGCAAGAGCCTCCAGGAATATCACATCTGCCCTGAGCTCAAGGTGGACCTCTCAACCATTGGGAAGCAGACCTTTGAGGTTGACACGTTCAAGCCCTTTACTGTTGAAATTGTGGACTCGGTGGAATCCTATGCAGAGATGCTGAGAGATATCTTTGATTTTGCTGCTCTGAAAGAATTGCTCTCAGGACCTAATCATATCAATGTACGGCTCGATGCAATGCATGGAGTTGTGGGTCCCTATGTGAAGAAGATTGTGTGTGAAGAGCTTGGCTCGCCTGCTAACTCTGCTGTTAACTGTGTCCCCTCTGAGGACTTTGGAGGACACCATCCCGACCCTAACTTAACGTATGCTGCTGATCTGGTCAACACTATGAAGGGAGGTGAATATGACTTCGGAGCAGCTTTTGATGGTGATGGCGATCGTAACATGGTTTTGGGTAAACATGGATTCTTTGTAAACCCCTCCGACTCTGTGGCAGTCATCGGTGCCAACATTACATCCATCCCTTATTTCCAGAAGACTGGTGTAAAGGGTCTGGCTCGCAGTATGCCCACCAGCGGGGCTTTGGACAATGTAGCCAAAGCTTTAAAGATGCCGCTTTATGAGACTCCCACAGGCTGGAAATTCTTTGGAAACTTGATGGATGCTGGCAAGTTATCCCTCTGTGGTGAAGAAAGCTTTGGTACTGGTTCTGATCACATCCGGGAGAAGGATGGTCTGTGGGCAGTTCTCGCGTGGCTGTCGATCCTGGCCACTCGCAAACAGAGCGTAGAGGATATCATGAAGGACCACTGGCAGAAGTTTGGAAGGAACTTCTTCACAAGGTACGACTATGAAGAGGTGGACTCGGACGCTGCGAATAAGATGATTGATCACTTACAGACCACTATGTCTGATAAAGCCTTTGTAGGGCAGACGTTCTCCTCGGGGGATAAAACATATCAAGTGGAGAAAGCTGATAACTTTGAATACACAGACCCTGTCGATGGCAGTGTTTCTAAAGGACAGGGTTTGAGGATCATCTTCTCTGATGGCTCACGTATCATCTTCCGTCTCAGCGGGACAGGCAGTGCCGGGGCAACCATCAGACTTTACATTGACAGCTATGAAAAAGACCCTCAGAAAATTTATCAGGACCCACAGGTCATGCTGGCTCCTCTGGTGGACATTGCCTTGAGGATCTCTCAGCTTCAGGAAAAGACGGGCCGCGCCGCTCCAACTGTGATCACATAATTACTCTAGAGCCCATATTCACCTGATCCAGCCCAGACTAGCCCTCACTGGCAATGCCTTACTTTATCATTATTGTCATCGTATTGTTTGATACCCCAGTCATTATGTGTTCAATGTGTCTTCAAGAAGGTGTCACATTTCCAGTGTTCCACATGCACAATCAAAGATGTATATCCATtataaatagagagagagagagtataaaataaagtagagtaaaaaaaaaatgttcaagtCGTGCTTCTTTTCATGCGCTTTGGTTTGTCATTGGGTCTAAAGCGCTTAACTTTTATGTCTGCTAGATCTATCATATATGGAATCTAAAAATGACAgctatgttttattcatatgcGCAGTTTGTCTTTCATTTGAGGCTGAAAGTAGTAACTATTACGCCGCAGTGTGTTATTAGTGGATAAAGAATCCTAAATGCAGGAAACCTGCATTAAATATATCCTGCTTTTAAATTAACACCACAAATAGCATGCGTGTCTTTCAATGGGAGTTGACACTTAAAAAAggtcacacaaaaaaattacacagaTTGCACAGATTGGATTTTCATAAAACTTTGCATACGTTATAAGACTTTATGTCAGAGTTTGTTTACAATGGTCTACCAAACACAATATATGtcacaaatatgtaaattaaaatctgctgcttctttttttttaattaaggggtagttcaccaaaaaagtaaaaattttgtCATGTACTCACCCCAAGTTCTTCTGTTTGAGTGTCTTTATTTTGtaagaagatttttttaaagattgatTTTAATCATACAGTTGTCGGCAGCCATTAACTTCCACAGTATGGGAAAAATGTTCTGGAAGTCATTGGCTAACGTCTGGTTTGGTTATTAACATTCTTCAAAGTGTCTTTCATTgtgattaaatgtgattatgAATAATTTGCAGGAAACGTTATGATAAAACGAATAAGACT

Function

GO:

id name namespace
GO:0019388 galactose catabolic process biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0005992 trehalose biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0004614 phosphoglucomutase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01835 pgm; phosphoglucomutase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251130.1 lncRNA downstream 106680 14651716 ~ 14656031 (-) False LOC122346442
XR_006251129.1 lncRNA downstream 106680 14651716 ~ 14656031 (-) True LOC122346442
TU67022 lncRNA downstream 268689 14493121 ~ 14494022 (-) True G45277
TU67012 lncRNA downstream 483685 14263867 ~ 14279026 (-) False LOC122346673
TU67118 lncRNA upstream 135605 14905502 ~ 14905708 (-) True G45355
TU67394 lncRNA upstream 332793 15102690 ~ 15154616 (-) True G45532
TU67412 lncRNA upstream 415255 15185152 ~ 15239640 (-) False G45543
TU67413 lncRNA upstream 415255 15185152 ~ 15213632 (-) True G45543
TU67416 lncRNA upstream 415255 15185152 ~ 15221025 (-) False G45543
XM_043242953.1 mRNA downstream 4759 14657884 ~ 14757952 (-) True ror1
XM_043242954.1 mRNA downstream 70480 14657884 ~ 14692231 (-) False ror1
XM_043242887.1 mRNA downstream 119723 14587270 ~ 14642988 (-) True cachd1
XM_043240967.1 mRNA downstream 179710 14523682 ~ 14583001 (-) False raver2
XM_043240966.1 mRNA downstream 179714 14523682 ~ 14582997 (-) True raver2
XM_043242114.1 mRNA upstream 1085 14770982 ~ 14780729 (-) True efcab7
XM_043242738.1 mRNA upstream 19779 14789676 ~ 14801854 (-) True alg6
XM_043242739.1 mRNA upstream 19779 14789676 ~ 14801823 (-) False alg6
XM_043242976.1 mRNA upstream 35407 14805304 ~ 14812624 (-) True foxd3
XM_043242692.1 mRNA upstream 137470 14907367 ~ 14914995 (-) True atg4c
TU66983 other downstream 569545 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 1081437 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 1294772 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 1295146 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 1295485 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67455 other upstream 559070 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 834013 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1289071 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1289996 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 1591303 16361200 ~ 16364020 (-) False fam183a

Expression Profile