RNA id: XM_043242122.1



Basic Information


Item Value
RNA id XM_043242122.1
length 1000
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC122347094
representative True

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 7661464 ~ 7695119 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CAGCATCCACTGAGCAAGGTAACGTGTGTGCAAGCAAGAGCAGGGTAATTCTTGCTACCTGCTCTGCAGCTAAAGGGATCTGTCCTCCTGTCATCTGTCTGCTATTGGATTTACCTGGAGAACAAGCACAGGATAGAAAGGGTGATTTTAAGGAAGCAAAAGAGTGACAGAAGGAGGCAACCATGGCCCGGCTGAACTGGTGTCTGGCAGCAGTGATTAGCTGGGGGAAGTTCCTCTTCTCTTGTTTCTTTCCGTTGAGAGCAGCTAGGAGAGATAAGCCAGAAGATTTTGAAGCCGTTCATTCCCACACCTTCAAGGCTAAGACCTTTAAAAAGGCCAAGAGTTGTGCAGTATGCAAGCAGGCTTTGACGAAGGAAGGCCTGGTCTGCAAAGAGTGCAAGTTGTCCTGCCATAAGAAATGTGAGGTAGCCACAGCCTGTGAATCTACAGCTACTACAACGACGACAACTACTGCAACTAACTACAATCAGGGATCCACAAAGTCTCCCAATATAGACTCCAAACGAAGGCCATCCAGGACCCTAAGTTTGATGCAAAAAATGGAGGAAAATAATGAAGTGGACCTGGTCTACATCACAGAGCGCATCATTGCTCTGTCCTTCCCTGATGGAACAGAGGAGAGTAAATACAGTGTGCACCTGAGGGAAGTGACCAGCATGCTCCGTTCTAAACACCAGCAGCATTATCTACTGCTTAATCTTAGTGAACGGAGACATGACATCACCAAGCAGAACCCAAGGGTGCTGGATTTTGGTTGGCCCGATCATCATGCTCCTGCTCTAGACAAAATTTGCAGTATCTGTAAAGCCATGGACACCTGGCTTAATGCAGACCCTCACAATGTGGTGGTACTGCACAACAAGGTAATCATATCTGGCCTTGGGCACCCAATCTCCACCTCCTTCGCCTTGCATGACTGACCAGACTGACATGAtgtcactgtaaaaaaactaaatcagttGCTACCttaaaatttaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64459 lncRNA downstream 163050 7461191 ~ 7498435 (-) True G43478
TU64450 lncRNA downstream 231039 7429778 ~ 7430446 (-) True G43472
TU64427 lncRNA downstream 332477 7324770 ~ 7329008 (-) False nomo
TU64428 lncRNA downstream 338643 7321889 ~ 7322842 (-) False nomo
TU64182 lncRNA downstream 548735 7108176 ~ 7112750 (-) False agap1
TU64487 lncRNA upstream 41971 7737090 ~ 7770424 (-) False LOC122346476
TU64486 lncRNA upstream 70418 7765537 ~ 7770424 (-) True LOC122346476
TU64489 lncRNA upstream 72906 7768025 ~ 7770424 (-) False LOC122346476
TU64512 lncRNA upstream 103005 7798124 ~ 7799697 (-) True G43516
TU64529 lncRNA upstream 161346 7856465 ~ 7857596 (-) True G43528
XM_043241646.1 mRNA downstream 2285 7608473 ~ 7659200 (-) True tns1a
XM_043241072.1 mRNA downstream 273186 7385719 ~ 7388299 (-) True LOC122346455
XM_043241845.1 mRNA downstream 284748 7356348 ~ 7376737 (-) False col18a1b
XM_043241647.1 mRNA upstream 30284 7725403 ~ 7732324 (-) True LOC122346795
XM_043241119.1 mRNA upstream 70621 7765740 ~ 7770451 (-) False LOC122346476
XM_043242131.1 mRNA upstream 270629 7965748 ~ 7980089 (-) True LOC122347101
XM_043242552.1 mRNA upstream 318006 8013125 ~ 8015759 (-) True inha
XM_043242975.1 mRNA upstream 487896 8183015 ~ 8188384 (-) False cacng1a
TU64423 other downstream 75118 7579895 ~ 7586367 (-) True G43463
TU64425 other downstream 75118 7579895 ~ 7586367 (-) False G43463
TU64424 other downstream 78365 7579895 ~ 7583120 (-) False G43463
TU64411 other downstream 373558 7287290 ~ 7287927 (-) False LOC122346787
TU64107 other downstream 634058 7001115 ~ 7027427 (-) False trim63a
TU64510 other upstream 351983 8047102 ~ 8048008 (-) True G43514
TU64907 other upstream 1013587 8708706 ~ 8711960 (-) True G43801
TU64905 other upstream 1016902 8712021 ~ 8713858 (-) False G43801
TU65020 other upstream 1565497 9260616 ~ 9261245 (-) True G43890
TU65026 other upstream 1570883 9266002 ~ 9267324 (-) True G43896

Expression Profile