RNA id: XM_043242163.1


Basic Information

Item Value
RNA id XM_043242163.1
length 992
RNA type mRNA
GC content 0.44
exon number 6
gene id myl6
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19547029 ~ 19551857 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCGCCCGCACAATTCGATTGGCCGATTCGGCTTGAATAGAGTTGACATGACGTCATCGTGAATCTAGCGGTGTAGCGGAGAGTGTTCGCCCATACTGTACTTCACGCAGCGCTCGCGCCGAAGCCCCATCCTCAAACACTGCAGTCATGTCTGACTTCACTGAGGATCAGATTTGTGAGTTTAAGGAGGCCTTCCTTCTGTTTGACCGAACGGGAGATGGGAAGATCATGTACAATCAGTGTGGGGATGTGATGCGTGCTCTGGGGCAAAACCCTGTCAATGCTGAGGTCCTCAAAGTCCTGGGCAACCCCAGTAATGAAGATATGAACATGAAAATGCTGGACTTCGAGCAGTTTCTGCCCATGCTGCAGGCCATCGCTAAGAACAAGGATCAGGGATCCTTTGAGGACTTCGTGGAGGGGCTGCGGGTGTTTGACAAAGAGGGAAATGGAACAGTGATGGGCGCTGAGCTTCGACATGTCCTCACTACACTGGGTGAGAAGATGACAGAGGAAGAAGTGGAGACACTTTTGGCGGGACATGAGGACGCTAATGGCTGCATCAATTATGAAGAACTCGTAAGGATGGTCATGAGCGGTTGAAGAATTCAAACacgtttcttttatttttgtccgTCAGGCCCCCTCATTTATGTGATTCTTCATTTCCATAttagctttttacattttttttttccttaagtGCCTTTTATCATGTTTCTGGAGAATTATGGCTCAATTCATTCCAAAAACTTCCACTGGTGTTCATAGGTTTGCTTGAATACCTTTCAGCCATTGCATTCATTCCATCAGTTATTGTATTCGGCCCCTATTCGTCCTAAACTGTGAGGGGCATTTTGATTGGCTCtcactgtagttttttttttatttattttttttattaaccattGACTAAATGTTTGTTAGTCATTTGACATCACTCTTTATTGTCTGCTGAgcatcataataaatattcagaatGATCTTTTGA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68953 lncRNA downstream 149299 19393477 ~ 19397730 (-) True G46540
TU68955 lncRNA downstream 149299 19393477 ~ 19397730 (-) False G46540
TU68954 lncRNA downstream 149624 19393477 ~ 19397405 (-) False G46540
TU68898 lncRNA downstream 304218 19212639 ~ 19242811 (-) True G46509
XR_006251202.1 lncRNA downstream 395335 19149746 ~ 19151694 (-) True LOC122347223
XR_006251216.1 lncRNA upstream 54506 19606362 ~ 19607056 (-) True LOC122347383
TU69118 lncRNA upstream 239786 19791642 ~ 19792328 (-) True G46658
TU69107 lncRNA upstream 249387 19801243 ~ 19802266 (-) True G46647
TU69142 lncRNA upstream 282214 19834070 ~ 19838047 (-) True G46673
TU69300 lncRNA upstream 289623 19841479 ~ 19842967 (-) False tomm6
XM_043242213.1 mRNA downstream 45944 19486992 ~ 19501085 (-) True pfkmb
XM_043242212.1 mRNA downstream 48768 19486992 ~ 19498261 (-) False pfkmb
XM_043242214.1 mRNA downstream 60182 19477718 ~ 19486847 (-) True itgb7
XM_043242838.1 mRNA downstream 69473 19465314 ~ 19477556 (-) False espl1
XM_043242837.1 mRNA downstream 69473 19465314 ~ 19477556 (-) True espl1
XM_043242162.1 mRNA upstream 1461 19553317 ~ 19555942 (-) True tsfm
XM_043242483.1 mRNA upstream 8706 19560562 ~ 19568042 (-) True sumf1
XM_043242557.1 mRNA upstream 57944 19609800 ~ 19612454 (-) True si:dkey-197j19.5
XM_043242485.1 mRNA upstream 61248 19613104 ~ 19619818 (-) True uroc1
XM_043241808.1 mRNA upstream 68301 19620157 ~ 19621083 (-) True chchd4b
XR_006251201.1 other downstream 397299 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 490898 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 829541 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 901895 18644306 ~ 18645134 (-) True G46420
XR_006251187.1 other downstream 1772922 17743715 ~ 17774107 (-) True opa1
TU68985 other upstream 1463 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 1463 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 114578 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 291188 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 544533 20096389 ~ 20102458 (-) False srsf3a

Expression Profile