RNA id: XM_043242168.1


Basic Information

Item Value
RNA id XM_043242168.1
length 1674
RNA type mRNA
GC content 0.42
exon number 6
gene id tprg1
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13314057 ~ 13333574 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTAGCGAGGGAGTTGCTGCTGCTGCCTCACGGAGGTTTCGTTTTCTCTTCAACGCCCATCACGGAATATCACGGAAGTAGGAAATAGGTCCTGACGCGGACGCAAAGCGTAGTTAAAACACAGAACGTTGATTTAATTCTTGCAACCAGCGGTCGCCATGTCGGAGAAAGATGAGGAGACGTTCAAGTCTGTGGACTTGGAGCAGCAAACCGAAAAGTCTCCGGAACCAGACATCAAGCCTCAAGAATCTcaaagtgaaacaaaaacagataaacCCAGCACTCCTTCTACAGAAGCCAAGGCAGAAAGCACCCCCCCTGCAAAAACGTCAGCCGCCAAAGCTAAATGGGCAGCATCTGCGGAACAGTTTAAACTGAAGAGATTTTTTGTCCTCAGGccTGGAACACTGGACCACGGCATTGAGGATATTAAAACTCTGGTGAATCCTACAGAAGATGGTGCTGTCCAAAGTGTCTGGCTCATGGCTgaggttgaTCATTGGAACAACGAGAAAGAGCGCTTGGTGCTCATCACGGAGAACACCCTCCTCATCTTCAAATATGACTTTGTCATGCTAAACTGTGAGCAGATTCAAAAGATTCCACTCAACTATATCGACCGCATCTGCAGTGGTACCTTCTGCTTTCCACCACGTTCCCTCCTGACGAGAGAAGGTGAGGGTGTGCGGGTGTTTTGGGACAAACTCAGAGAACCGTCTTTCTCTTCCCGTTGGAATCCTTTTTCTGTTGACTATCCTTTCAGCACATTCACCTATCACCCTGTCAAGAGTGCCAATGAGCAGCTGGGCCGTCTGTGTGATATTCAAAACTTCAGAGAGCAGCTGACTTTGGCAGCACAGAAAGCCCACAGCAAGAATCCTATACCTGGGAAAGCCAACGGGGTTCTTGTGCTGAATCAACCCATCCTAATTGAAGCCTACGTGGGTCTGATGTCTGTTATAGGCAACCAAAACAAGCTGGGCTATTGCTTAGCAAGAGGCAATATTGGTTTCTGAGGGCACTTTGAATCCTTCCGATAATGGTTTACACTAAGAAATTCTCTTATACAAGCCGAGCATGTGTAATTTATACTTAAGATAATGAAGGATTTTTTTGAACCAAGATGAATGTATGatttatattcttaaaatacattCCATTTCCATCAAACCTTCATCTACTTATATTGCCCCAAGAACCTTAACAAAGTCTATCTGTCATTTCCTTTGGGTTGTGTCATAACATACAAAGCATGATGTTCCTCCTCCTACGACTTCCTGTGTAGaaatatttggttttttttggtttttctgttttagttatttCTCTGCAGTAACTTGATTCTTCACAATGTGCCTTTCCTTTCTGTATTTATGCTGATATTCTACCTCGTCACAAGGCTTTTTACAAGGCAATTGATGCATGAAGGTACACAAGTCATTTGTTTGATGGTATAGGGTTTATTATTACAGTAGAACAGAGTGCTGGATTTTCCCTTTTCTTGTAATTACTAGATTCACTCGGTTGTCTTGATTTGTTTCTACAGTAGAATGTCAAACACATTGtaaagtcttttttaaaaataaacggTAATACAGAAACGTAACGCATGTGCtgaatacagtaatacagtaacTACAATTAGGAGTAATAAAAAAACGGTGCTTTATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66449 lncRNA upstream 203 13313553 ~ 13313854 (+) True G44872
XR_006251172.1 lncRNA upstream 210491 13101279 ~ 13103566 (+) True LOC122346816
XR_006251171.1 lncRNA upstream 210491 13102272 ~ 13103566 (+) False LOC122346816
TU66120 lncRNA upstream 218147 13093856 ~ 13095910 (+) True G44640
TU66066 lncRNA upstream 229827 13083380 ~ 13084230 (+) True G44615
TU66450 lncRNA downstream 1615 13335189 ~ 13335542 (+) True G44873
TU66446 lncRNA downstream 3344 13336918 ~ 13338450 (+) True G44869
TU66451 lncRNA downstream 5460 13339034 ~ 13339305 (+) True G44874
TU66453 lncRNA downstream 8902 13342476 ~ 13342840 (+) True G44876
TU66456 lncRNA downstream 11690 13345264 ~ 13345944 (+) True G44879
XM_043241840.1 mRNA upstream 34877 13119195 ~ 13279180 (+) True LOC122346939
XM_043241841.1 mRNA upstream 34877 13127515 ~ 13279180 (+) False LOC122346939
XM_043241811.1 mRNA upstream 231938 13080565 ~ 13082119 (+) True smx5
XM_043241810.1 mRNA upstream 234011 13065838 ~ 13080046 (+) True inpp5d
XM_043241608.1 mRNA upstream 249628 13058859 ~ 13064429 (+) True gpr17
XM_043241158.1 mRNA downstream 16947 13350521 ~ 13385990 (+) True tp63
XM_043241155.1 mRNA downstream 16956 13350530 ~ 13389446 (+) False tp63
XM_043241153.1 mRNA downstream 16959 13350533 ~ 13389439 (+) False tp63
XM_043241150.1 mRNA downstream 18903 13352477 ~ 13389570 (+) False tp63
XM_043241145.1 mRNA downstream 18931 13352505 ~ 13390651 (+) False tp63
TU66125 other upstream 204691 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 231938 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 533137 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1221602 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 1303948 12002148 ~ 12010109 (+) False LOC122346564
TU66465 other downstream 60655 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 638599 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 747359 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 1902637 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 2025287 15358861 ~ 15459386 (+) True G45419

Expression Profile