RNA id: XM_043242170.1


Basic Information

Item Value
RNA id XM_043242170.1
length 7441
RNA type mRNA
GC content 0.39
exon number 11
gene id rab44
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20084841 ~ 20095517 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAAAGGAAGCTAGATGAGCTCAGCCTCCTTCAAAAGAGAAACAGGCACCTAAAGTGTTCAGCTTTGTGCTCTGCTAAACACCCAAGACTGCGCAGTGGAAGGATCACTGAAAGGGGCACCGGAAGCCATGTCAGGCAGAAAATCCAAGAAGAACCAGAGGCTTGGTTCATCACGACGAGGTCCTAAAGGTCTTAACAGAAATATCGagaaagatgatgatgatgggtTTCAGCAAATTGCAGAGTCTGAGGATGGCCGTGATGAATTTCACACCACCAGTGCAACACAGTTTGATCATTTGCCAAGCTCAAGCACTGAACAACAGCCATCTGAGTTAGAAGGTCTTCCACATGCTAGGGGTCACAAGGATTCACTCACAGAGACTGAACTGCCAGAACGGAAAAGAAAAATCGGTTCAACTCGCAAGAGTACTGCTAGGTTTAAAGGTGATAAAAATCTTGATGATGTGAGGACCACTGAAGAGTTAGATGAAGAATACAAAACTCAACCAAACACACTGACCACTGAGAAACCAGATGCTTCTCTAACAGAAGAAGAACAGTCAAGTTTTCCTTCTGATGTATCCCATCAGACCAAAGGTTCTGGATTTGGAAAGATGTCTGGAACAACTCTTATGTTTGCAGTtccagaaaataaagaaatactcCCTCATTCCCATGAGTTAGTAAATGATATGCTTATAGATGAAGCAGTGGGGCCATCTGCCCATTCTATTGCTGTCACAGTAGCTGAGTGTGATTTGTTGCAGAAAGATTCAGTCATGTTTAATAAACCCAAAATACTTAGTGACCAAGAAGCCCAAATAGCCAGTACCTCTGGACAAAAAAGAAGGATGGGCTCAACCCACAAACCTCTTGGAGGGCAAAACAGTGAAAACGTAGGTGTGCAAGAACATTCGCGAAACATGACAGAGAACGAAAGGAAAGCAGAAGTCATGGGCGAAgcaaagttaaaaatgtcagaAGATATGGTGCAAACATGGGATGATGTGGCAAGAGATGATCCATCATCCCACACAAAATCAGCTTTACTTTTTAGTCAGTCTCTATTGGCTGATGGAACTGAGGTCAAAGAATCTCATGTCTCAACTggaactgaaactgaaactatTAACCAGTTAGTTACTTTTCCTCTTGATGATTCAGAAAAGCCCCTACATGAAATATTTAGTCACCATGGGACTTCATTACTGAATGAGGCATTGGATTTCGAGATTGGTTCACACACTGAGGATTTAGATGGTCTAAACAAAGTTTTGAAAGAAGCAGGAAGTCATTCAAGTGATAACAGCCAACATGTGTCTGATACAAAAACAGATACTAACCCGTCTTATGACTTTAGAGATGTAAACACAGAAGCCAAGAAGGAGGTTCTAAAACAGAAAGAAGACACACAATTAGAGGAACTTTCATTGCGTGATCAAGAATCTTCATTAAGCCAACATGACATAGCCGCTCTAGATAATAGCTATGATTGTTCTATGGTTCAAACTATAGTGGGAGGATGTAGAAGTTTTGATATGCCTGTGTCTAATATTAGCCATACTGAACCCACAACTCCAAATTTACCACATAAGATGAAGGATGATGTTGAAGAAAGACAAGAGATtcatatagaaataaaacaagaaaataatgtttgtaaagTAACATGTGATACTCTGACTGATTTGGTGTCTGTTATGGAAGAAGATAAAGATCCCCATATTTTAGCaatgagagaaaatgagaatatGAGTGATGAAAGAGGATCTGAAACAGAATATGCTTTTGAAATGACAGACCAGGGTGATGTAAGAGATCACAATGTATCACAAATAATGGTGGATGTAAGAGGTAATGAAAAAGACATTGAAACAAGCACAGAGACCATTTGTATTTCACACCAATTGGATTTTACAACTGAAAAAGGGGAGTTATACAGAGGACAAGAGCATTTTTCATTGAATATATCTCTAACACACAGTACAACACAAGATAATGCTGGGAAGATGCTAGAAAATGAGGAAGTTAGAAAAGGCCAAAAAGAGACTGAAAATGCTGCAGTTAATGATGTGTCCTCAGAGTCAGAGGAAATGTTTAGTTGTAAAGACTTAGCAACGGATAGAGGATCTCACGTACACCAACAACTGTTGATGCAATCTCCTGATAAAGGTTATCACTTGCATGAAAATTTCAAAGACAGAGGTGAAAAGAAAGGAATACTTTTCAGTGTAGAATCAGAGAATGCAGCTTTTGATAGACACAATGTGAGAAGTGAAGGAACAGACAGAATTAAGGAGATGGATGCAGCACCAGATGTGGAAGATGCAGACCTACATTTAGAAATTGAGgcacagaacaaaacatttgattcaACAAACAGTGAAGCAGATGGAACAGAAAGGAATGTCAGTGGTGCTAGTGTTTTAGTCAGAGagaataaagttattaaaaatacagtagagAGTACGAGTCATTCGTCAGATTTTCCTGATTCTCACATGGAAGCACTGAAAGTGTCTGAAAATTGTGAGAAGGAAGTTTCaggagaaacaaacacaattcaCAAGCAAAGTGACATTAGCATCATTCCTGAAGATTCTCAAAGAGAAAAGACACAATCAAAGTCAAGTCCAGTTATTCAGAAGAGAAAAATGGGTTCAACTCGTAGACCTCTCAGAGGGAATGCAGGACAAAGAAAAGGCCATGATGAAAAAGAAATCTTCAGTTTGGAGGATGAACCCAGTCCAGAAGAATCCACATATACTGCAGTGAGTATCTGTGACATTTCAGAATCACAAACCGTCACAGAAATTCATGCTGGGTCCCATGAAAATACTGGACATGCTGAAATAATACCAGCAGAGGGAGACACAGAATCACactcagaaaacaaaatgtttgacTCAACAGCAGTGTTAGTTACTGGAGATGATGTTACAGCGCACAGTCATATGACTACTGAATCAGATTTTCATCAAACTTCTGATGCAAACATGGAAACGCTGAAGGTATCTGAAAATCCTGAAGATTTAAGTGATGCACTCAGGAATTCACAATCAGAAAATCaaccagaaaacaaaatgattgaGGTAACATCTGAAGCAGAAAAATCAGAAGATACCACCTGTGAAGCTAATGTTTCAGTCAAAGAAGATGAAGTTATTGGAGATGCAGATACAGTGAAGTTTAATATTACTAATGAGTCAAATTTGCTTCAAGATTACACGATAAACGACACAAAACTAGAAGCACTGGAATTGTCTAAAACAACTGAGAATATTTCTGCTGTGACGGATTCTGTCCTTGTGCACGATGATGGCACTGAAGGAtcaagagagacagacacacttCCTGAGCAAAGTCACATCAACATCATTCCTGATGATTCTCATGGAGAGGAGGCACATTCAGTATCAAGTCTAACTGTTCACAAGCGAAAAATGGGTTCAACACGTAGACCTCTAAGTGGGAACAAAggacaaagaaaagaaacaaaacatcatGATGAAAACGAGACACTTGACAGTGACGATATGATCAATGcagagaaacaaacaattaGTTTGGAGAATAAGTCCAGTCCATATGAATCTACCttacaaagcacaaaagatGTTACTAAAGTAGAGGAGATGGAAGTATTTGAGAAGAATGATGTTGGTCCTGTTGAAGAGTCTGAATCTGCTCTCCTGCAGTCTTCATGTACTTTAGATTTAGTGTCTGAAGAATCCACTGCAATAAGTATCTGTCACATCACAGAATCACAAACCCTCACAGATATTCATGTAGTGTCCCAAGAAAATGCTGGAGATGTTGAAAGAGTGGCAgcagagaaagacaaagacttACAATTAGAAATTGAGGCACAGAACAAAACACCTGACTCAACAACCGGTGAAGCAGAAGAAACACAAAAGAGTATACATGATGCTACTGTTTTAGTCAGAGAAGTAGAAGTTATTGGAGATACAGATACAGTGGAGAGCAATATGACTATAGAGTTAGATTTCATTCAAAGATCTCCTGATGCTCACATGGAAGCACTGAAAGTGTCTGAAAATTGTGAGAAGGATGTTTCaggagaaacaaacacaattcaCATGCAAAGTGACATCAGCATCATTCCTGCAGATTCTCACAGAGAAGAGACACACTCAAAGTCAAGTCCACCTCACACACAAACTGGTCCATCACAGAATGATACTGGCTCACATTTATTCCCAGAGTTCCCAGAAAGTATTGCAGATTTTGTGAGAGACAGTAATAGTTTTCCTGATGTGGTCATGTCTGATGCCCTACTTATGAAGGAAACCCAAATTTATGTGTCATCTAATGATGTTCCTCCAACAGAGGTGGTTGAAATGAATCCAGTCTCCAAAATGTCTatgcagaagagaaaaattGGGTCAACTCGTAAGAGAGTGAAGAGAATGGTAAATGACaaggaggatgaagatgacaAAGTGGGAGCATctgaaaatataacaaatgatGATGAGGCAACAAAGTCAGAAGAGAAATTAACACCCAATGAAGCCATTACAGGATCCTCTGTACATCAGCAACTGTTCAGCTCACCTGATGATAAAGAAGGCCATGACATTCAAGATATTCTTTGTAAATCAGATGTACAGGCAgacaaatatgaacaaaatgattcaaactCTACCACAAATCTAAAGCTATTGATAGAATCTGAATGTTCTTCAAATGTTGCTGCTGAAATGGTTTCAGACATTCCAAAGGGAGAAGCATACTTAAAGCTTAAACAAAATGTCACTCCTAAAGAGTCTCATAGAGAAGATCAACCAAATTTAAATCCAGttgttcaaaaaagaaaaatgggcTCAACGCGTAAGACGCTCAGAGGACACAAAGGgcaggagagaaaaacagaatccaaaaatatgaatgaaaatagTGAAGGAATAACACAGGAACAGAATACAGAACCACATTTAGAAACCAGTGCAAGAAAAACTGAACTTGATGAAGAGGTTGAACAAAATTTCCCAGATGATTTTTCTCATCCAGTTGCTTCTTCAGACATTTTCCTTGAACCAGAAAATTTTGTGAAGGAAGTTTCTCAGAATATCCATGACCTATCTGAGGTGAATGAGGAAAAGGGGATGAACATTACTGGAAATGACAGTAATTGTCGGAGTGAGCCAATTAATCTCAATGAGGGGACACAACACAAATTTGTCTTGACAGTTAGTCACAAAGATAATCAGATCGTGTCAGAGGCTgaacaaactgaaaacacacatgaGGTTATTCCCACGCAAAAACTAAAAGCCACTCAGGATGATGTTGTTCATGAAAACAACTCTCAAAAATTACCTGCCACCCAAGAAAAGAGGCGAAAGATGGGCTCAACCCGGAGAAATCCTCGAGCAATGCAAGGGAGAAATATGGCAGATAATGAAGAAATACTTGGTTTGGCAGAGGATGATTTGAAAGAAGCATTAAGCATAGGTCAGGCCGAGGAAGTGTCTTCAGTCAGCACCACAGATGTTCAATCAGAAATGCTTGTTGGTGCAACTGATTTAAAAGTTGAAAATGTTCACAGTTCTAGACCAACAGTGCCCGAAACATCTGAAAATACACTTCTCAGTGAGATAGAGAGAGCATTAAATAAGGCTTCTCAAAGTCCATTGAGTTGTGATTGGGAATTAATTGCCAAAGAGCAAAACCCAGATGACTTAGCCAATGCTCCTGATCACAATATGCCAGAAAACTCAGAAATCAGATCTCTGCAGCCAGTTCCATCAGCTCACAGTGAACCAATCTCACCAGGAGGACGAAGAAGAAAAATGGGTTCAACTCGCAAAAATCCAAGACAGCAGCTCAAAGCAGAAAGGGAGGATGAAGACAAAGAGGATGAGGAAATACATGAGAACTCAAAGGAAAATAAGCAAGAAAAGAAGGACCTTGAAAGAGTTGAGGTGTCTGTGATGCATAATATCactgaaaacaaactgaataaagaGTATCTTGATGTGTCTAGTGCACATGCAAGTAGCAATCAGCTACAAGAGGGCACTAACCCTGTTAGCCAAGAAAAGACGTCTCCATCAACTAAAAGGAAGTTTGGGTCCAGACGTGCTAATAAGGGCAAACAAGGCCTTAGTAGGTTGGCTGATTCAGACTTTGACAATGAATTAGAAGATGGAGATCAACAACCAGACAGCTTTGAGGTCAAGGACAAGCTGAACAGTGCTGACTTAGCGGCTTGTGATCCATGCATCAGCCTACAACCAGAGAATCAACCAGCTTCTGAGCAGAGGAACATGGAAGCCATAAATGAAGAAGCTGCTCCAAAAGACACTGGTGCTGGGCTCGTTTCTTTCGAACAAATCATAAAACATGATAGCAGCACTAAAGCAAAACAggcagtacatttaaaaaacaggaTTTCAGATACTGAAGTAGTTCAGTTTAATGTTGTCATGGTGGGAAACAGCTGTGTGGGAAAGACTTCCTTCATAAGACGCTTCCATGAAGGCCAGTTTACCGAGGATTACCGATCCACTATTGGTGTTGACACCTGTGTACAGACTGTTGCGCTGCCTGACAAAACTGTTAAACTGCATATATGGGACACAGCAGGTCAAGAGAGgtTTCACAGCATCACCACACAAATGTTCCACAAGGCTGATGGGCTTCTGCTCATGTATGAAATCACATGTTCAAAGAGTTTTATTTCTGTACGAGATTGGATCTCTCAAGCTCGGGAAAGGGCCcctgatgatgtcatcatgATGTTGCTTGGAAACAAAAATGATTCTGTAAAGCGTGAAGTTCAGATTCAGGAAGGGGCGGATCTGGCCAGAGAGTATAACATACATTTCATGGAATGCAGTGCTGCAACTGGGGCGAATGTGTCAGAATCCATGATGGGTCTCGCAGAGATGTTAGTGCAGCGCAAGTCACAGAAGGAGAAACACACAACACTGAGAAGAGATCCACCACAGAAGAAATCTGGTTGCTGTTGaaaacacactcccacacacacaacatgcacAACCATTCCAACTGTTGGGTTagtaagatatattttttttacaagaattaatattattattcagcaagtatgcattaaattaattaaaaattcacagtaaagaccatgtacagagaaaaaactgttataaataaataattttctttaattatcTGTTTATCaaggaatcctgaaaaaaataaattttaaatggttttcatACATTAAGCTTTCCTCTTACAGGAACTTCATGTAAAAAgtacctttttatttcataattttaccAACCCTAAATActttgtaaaaagtaaaagaaaaacaatttacTGCTTTCATATTGTTGCTTTAGAAGAATGgcgtttttgtattttatggaTATGTACGAAGTACAATAATGGtttcaaacataataataaaatgatacattta

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69356 lncRNA downstream 84216 19998632 ~ 20000625 (-) True mustn1a
TU69340 lncRNA downstream 116381 19968246 ~ 19968460 (-) True G46803
TU69329 lncRNA downstream 128111 19899705 ~ 19956730 (-) False LOC122347177
TU69310 lncRNA downstream 204253 19880238 ~ 19880588 (-) False LOC122347207
TU69309 lncRNA downstream 206164 19877328 ~ 19878677 (-) True LOC122347207
TU69358 lncRNA upstream 5129 20100646 ~ 20102453 (-) False srsf3a
TU69397 lncRNA upstream 32431 20127948 ~ 20129839 (-) True G46836
TU69403 lncRNA upstream 54030 20149547 ~ 20152787 (-) True G46838
TU69407 lncRNA upstream 78021 20173538 ~ 20174291 (-) True G46842
XR_006251237.1 lncRNA upstream 144285 20239802 ~ 20240436 (-) True LOC122347561
XM_043241205.1 mRNA downstream 11344 20070910 ~ 20073497 (-) True trub2
XM_043241333.1 mRNA downstream 14634 20068870 ~ 20070207 (-) True hdhd3
XM_043242935.1 mRNA downstream 28086 20051004 ~ 20056755 (-) False slc2a11a
XM_043242934.1 mRNA downstream 28142 20051004 ~ 20056699 (-) True slc2a11a
XM_043241472.1 mRNA downstream 58970 20016546 ~ 20025871 (-) False sfi1
XM_043242173.1 mRNA upstream 507 20096024 ~ 20102459 (-) False srsf3a
XM_043242175.1 mRNA upstream 507 20096024 ~ 20099810 (-) True srsf3a
XM_043242174.1 mRNA upstream 507 20096024 ~ 20099794 (-) False srsf3a
XM_043241466.1 mRNA upstream 21358 20116875 ~ 20125261 (-) True slc6a22.1
XM_043242486.1 mRNA upstream 141757 20237274 ~ 20238660 (-) True LOC122347299
TU69304 other downstream 237443 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 418335 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 528910 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 528910 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 935111 19115061 ~ 19149730 (-) False vdrb
XR_006251194.1 other upstream 872 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 65923 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 433662 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2644455 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 2644455 22739972 ~ 22750947 (-) False tardbpb

Expression Profile