RNA id: XM_043242215.1


Basic Information

Item Value
RNA id XM_043242215.1
length 3857
RNA type mRNA
GC content 0.40
exon number 12
gene id tomm70a
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13407566 ~ 13416487 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTAAAGGAGGTGGTTCGTCGGTGCGTGCGCACGTTAGTTTGTGAGTTTGCGCGTTAGCTGGGTGCTGCTGCGTGGATGATGGCTGCGTCGAAGCCCGTAGAGCCTCAGTCTGGGAGTGGGCTCCCCCGTTGGCAGCTAGCGCTCCTTGTCGGGACTCCGATCGTCCTCGGTGTCGGAGCTGTGTACCTGTGGAACCGAAGTCGCGGCAAAGAAAAACAAGGGAAAAGGAATGGGGAGAGGAAAACCCCCGAAGGAAGCGCTAGCCCTGTTCAGGGCCAGCACGGTGCGACCAACCCAGAGCTGGAGAACATGAGTCCCCTTGACAGAGCACAGTCTGCTAAGAATAAGGGCAACAAATACTTTAAGGCTGGCAAATATGAGCATGCCATTCAGTGCTACACGGAAGCAATCAGCCTATGTCCCAAAGAACAGAAAGGAGATCTGTCCACCTTCTACCAGAATAGAGCTGCAGCCTATGAGCAACAGctgaaatggacAGAAGTGATACAGGATTGCTCTCAGGCAGTCGAGCTGAATCCCTGCTATGTAAAGGCCCTTTTTAGGCGTGCCAAAGCACTGGAAAAGCTGGGTAACAAGAAGGAGTGTTTAGAAGATGTGACGGCAGTATGTATTCTGGAGGTTTTCCAGAACCAACAGAGCATGCTACTCGCAGACAAGGTTCTGAAACAGCTGGGAAAAGAGAAGGCCAAAGAAAAATACAAGaaCCGGGAGCCCCTTATGCCATCTCCTCAGTTCATCAAGTCCTACTTCAGCTCCTTTACGGATGACATAATTTCACAGCCTTTacagaaaggagaaaagaaagatgaggATAAAGATAAAGAGGGTGAGGCCTCAGAGGTTACAGGAAGctcagGCTACCTAAAGGCTAAGCAGTATATGGAAGAGGAGAACTACGATAAAATCATCAGTGAGTGCACAAAGGAGATCGAGTCTGGAGGCAGGTACACAGCCGAAGCTCTTCTCCTGAGAGCCACCTTCTACCTACTGATAGGAAACGCTACTGCTGCACAGCCTGATCTCGACCGTGTCATCAACATGGATGATGCCAGTGTCAAGTTACGTGCTAACGCGCTCATTAAACGTGGAAGCATGTacatgcagcagcagcagccccAGCTTTCCACGCAAGACTTCAACATGGCTGCAGAGATCGACCCCCGTAATGCAGATGTCTACCATCACAGGGGACAGTTGAAGATTCTGCTGGATCAGGTAGAGGAGGCTGTGGGAGATTTTGATGAGTGTATAAAGCTTCGACCAGACTCTGCACTTGCCCAGGCCCAGAAGTGTTTTGCATTGtACCGACAGGCCTACACTGGAAACAACCCATCCCAGGTTCAGAAAGCCATGGATGGTTTTGAGGACGTCATTAGGAGGTTTCCAAAGTGTGCTGAGGGCTATGCTTTGTATGCACAGGCGCTAACAGACCAGCAGCAGTTCGGTAAGGCAGATGAAATGTATGACAAGTGTATTGAACTAGAGCCAGACAATGCCACAACATATGTCCACAAAGGTTTGTTGCAGCTTCAGTGGAAACAGGATCTGGAAATGGGCCTTGAACTCATTAGCAAAGCCATCGAAATTGACAATAAATGTGACTTTGCTTATGAAACCATGGGAACCATTGAAGTCCAAAGagGCAATCTGGACAAGGCTATAGACATGTTCAACAAGGCCATTAACTTGGCCAAGTCAGAGATGGAGATGGCCCATCTCTACTCCCTCTGTGATGCTGCTTATGCCCAGACAGAGGTGGCCAAGAAGTATGGGCTCAAGCCTCCCACTCTATAACTTTTGCCTCCTTTTGCCACTCTCTACTGCCGGGCCACAGTAACCATCCCattaccctttttttttctttttgtttttttgtacttcaTTATAAAGATGATAATTGTCAATGAAAAAGAAGGCCGGACAAGTTCTGCTACCACGTGTTTACACTAGTTGTTATGAGTACTGGAAGGTGGCACAGGAAATTGTGGAGGAGCGGCAAAAAGAATCAAGATAAAGCAGAAAGCAAGTGAAAAAGACTGATGGCTGCTTTGTTTGATATCAAATCATCAGTGGCATAGCTCAAATCCTCCCTCATTGAGTATGGCTTAGGCTATCTTGCAACTTGCAACAGTACTCATTTGTTCATGTTCAGCCTCCCCTGCCAATTGGTGTGACAAATGTGAATCtttttgatttatataattttaatttaattgtcaaCTACAGACATTGGGGTCCTTaatcagtacttttttttttttttttttttctcctttccaTCCAAGACACCAGATTAAGTTTATACCATTATACCAGTGTATACCATCAGCAGGACTGCATTATTGATTCATGGTTTGATGCTGTAATGTGCTCAAGGTTTGTCCTTTCACTGTCACATCCTAGCAACCTTATTTATGGTCTTTGTTGTATGGGAAGTGAAGGATTAAAGTTTTAGTTGAGATGTATTTGTGTTATAAATCTGTTCTTGATGTGTCACTGCTGTAATGACACTGTGTTTATAAGAAGGGGATTATATTGAAGTTAAATGCAAAATTTGGCCATActgttattcatttttgtttctttttacctcaagttttttttttttttttttttttacattctgtgctgcatttaataatgtcaatacaaattataatatCCTGTAGAAGATATTTAGcatatgaaaaaaatcaaatggtACAACAAATTTTAAAGCCCTGTACAAGAATTTAGCTGTGAAATCACCTTGCCCATCTCTTCAAAGTGAGGCACAAAAGTGTTACATTTTGAAAGCTTATCTGTGAGAaacattgcatttctttttttgagcaAGAACATGAataaatctagaaaaaaaacattaatcacCAAAATTACATTCCTATCATTTTATCTTTCAAACTGCACatatctgattttatttttgtttagtttctctttgaaataaaaatgtcattgagGTGTATGACTCCCTTCTTTATAAATcctaatgaaagaaaataaaaggaacACCTTACATTTAGCAACTAAgttcttcctccctggtcttttgttcaaaatttgcattaatttgTAGTCTTGAGATATTAAGGTACTTTTGTATATGTAGTGCTATAAATccctgttttcttttaatttgagAATGGTGTTTTTCctgttcatatttaataaaaccataacttttttttttgactactGTAGCCATGACTACTGTATCTACCTTCATATCCATCTTAAAGGAAATTCATTCTATATTGTTTACctgtttaagtttgttttatgacatcaacaaaaacaaagtggCATTACTGtcttttacatataaattgagatattttctatttttaaaccatTGTTGATTGAATGTGTAACATGGTTCGGGACTTGGCCTTTAACCTGAACATAACTAATAGTTTACAAAAAATAGGATGTGACCATTTCcctgtatgcatgtatacattgaTCATTAAGCATTGCATAATATGTAGATGTTTACATATGTTTGCTTATTTCTGTTTCCAGTCTGATCGATTGGTAGTAATGGATTTACAGACCAATTTGAGGGAACAATTCAATCAAGACTGCTGCATGTTTGAAGAtaactgtttaaaatacattttacaaatgcaaGCTAAGTGACACCACCTAAaggttaaaaattaatttgttgtgTTTGATCTATTGAAAGTAGCTgtgcaataaaactaaaaactcctcaagtaaaaataaatacaataagaGGGAAAAATGTGATGTTGGTAAAGTGTGTAATATTACTGTAtgataatatcaaataaaaaaatgagttgCCCACAATTATTCATAAAGCCAA

Function

GO: NA

KEGG:

id description
K17768 TOM70; mitochondrial import receptor subunit TOM70

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66532 lncRNA downstream 50045 13356987 ~ 13357521 (-) True G44942
TU66531 lncRNA downstream 52783 13354307 ~ 13354783 (-) True G44941
TU66530 lncRNA downstream 53386 13353915 ~ 13354180 (-) True G44940
TU66529 lncRNA downstream 53916 13353364 ~ 13353650 (-) True G44939
TU66528 lncRNA downstream 54497 13352462 ~ 13353069 (-) True G44938
TU66619 lncRNA upstream 120457 13536944 ~ 13611593 (-) True G45014
TU66648 lncRNA upstream 276851 13693338 ~ 13694164 (-) True G45036
TU66652 lncRNA upstream 281012 13697499 ~ 13697711 (-) True G45039
TU66661 lncRNA upstream 301715 13718202 ~ 13722531 (-) False pex5la
XR_006251212.1 lncRNA upstream 407185 13823672 ~ 13835591 (-) False LOC122347350
XM_043241142.1 mRNA downstream 484 13390703 ~ 13407082 (-) False tbc1d23
XM_043241140.1 mRNA downstream 484 13390703 ~ 13407082 (-) False tbc1d23
XM_043241141.1 mRNA downstream 1670 13390703 ~ 13405896 (-) False tbc1d23
XM_043241138.1 mRNA downstream 1670 13390703 ~ 13405896 (-) False tbc1d23
XM_043241139.1 mRNA downstream 1695 13390703 ~ 13405871 (-) False tbc1d23
XM_043242546.1 mRNA upstream 55409 13471896 ~ 13478911 (-) True glmnb
XM_043242777.1 mRNA upstream 73463 13489950 ~ 13495596 (-) True gfi1ab
XM_043242771.1 mRNA upstream 79648 13496135 ~ 13535440 (-) False evi5b
XM_043242768.1 mRNA upstream 79648 13496135 ~ 13535440 (-) False evi5b
XM_043242769.1 mRNA upstream 79648 13496135 ~ 13534741 (-) True evi5b
unassigned_transcript_1091 other downstream 436017 12971478 ~ 12971549 (-) True trnap-cgg_1
unassigned_transcript_1090 other downstream 436412 12971083 ~ 12971154 (-) True trnap-ugg_5
unassigned_transcript_1088 other downstream 1434786 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1087 other downstream 1435015 11972480 ~ 11972551 (-) True trnag-ucc_1
XR_006251152.1 other downstream 2338109 11055035 ~ 11069457 (-) False brdt
unassigned_transcript_1092 other upstream 4160 13420647 ~ 13420718 (-) True trnaa-cgc
unassigned_transcript_1093 other upstream 4342 13420829 ~ 13420900 (-) True trnaa-cgc_1
unassigned_transcript_1094 other upstream 4833 13421320 ~ 13421391 (-) True trnaa-ugc_1
unassigned_transcript_1095 other upstream 5137 13421624 ~ 13421695 (-) True trnaa-cgc_2
unassigned_transcript_1096 other upstream 5318 13421805 ~ 13421876 (-) True trnaa-cgc_3

Expression Profile