RNA id: XM_043242266.1


Basic Information

Item Value
RNA id XM_043242266.1
length 5737
RNA type mRNA
GC content 0.47
exon number 10
gene id shroom2a
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14079628 ~ 14116522 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATCATTACGGAATCGGACCAGATGGTGTAGTGGACACGGATGTTTTGTACAGGTGTTATTGAgGAAGATGAAAATGGTGGATATTGTAGCACAGAAAATGCCATCAGAGAGTGACGTGCATATGGCCCGGAGCTTTCTCACGAAGATTTTACGAAGTTCCATGAGAAGAAATGAACCCATGAGCAGACCTCACTCTTGGCATGCCACCAAGTTTAACGAGAGCCACTCAGATGCCAAAATCCAGTCCACACCCTCACCAGTCTGGCAAACAAGATATGATGCAAGttcatTCTCTTCTGAACTCTCAACTGGATGGGAGCAAACAAACCTACGGAGAGCATCTGACCAGTTCAGCTCTTTGGGTAGTATGGACAGCCTAGAGCATAGCTCACATCCCTATCCACCTGGTCGTCTTTCCCCAAGCAAGTCCAACAATAACAGCATTGAACATTTAGGCGGTGGTAAACGAGACTCTGCATACAGCTCCTTTTCTACAAGCTCAGGAACACCAGATTACACACTGTCCAAAAGTAACGCTGCATCAACTGAGAACATGCTGTACAAAATTAATCAGTGGGACTCAAGTGGCAGGCACAGCAATGGCAGACATAGCCAAAGCCTAAGTGAAGGTGTACGACAAGATGAGAGGCTTGGATACTTGCAGCATCTCTCAAGTTCAGGAAGCCATGAGATCCCAAAAGCTGAAGAACAACCAGGCACTCGGCATTCAAGAGTTAGTATTGGACCAGTCTGGCATGTCCCAGATATGAAGAAAAGCATGGTATCCTCCACCCCACCTCCTACTCCACCGACACGCAGTGATAGTTTTGCTGCTACCAAGGTTCATGAGAAGGGGTTGATTACAGGAACCTCTGAGGGCCTTAATGTTCATGCCCAGTTAAAGCCTCAGGTAAAAGCATTGCAAAAAGCAGGAGAAATCCATGAAAGCACACAAAGATCTCACCAAGTCAACGAGACTGGTCTTGAGGGTCGACGTGATTATAACCTGCCATCTAAAAATGATTCCTCAAATCCCTACATTTCATCTGATGCCCATCATCAATATCCACCCCATATGTCATCAAGCAAAACATACTCCCTATCAACGACAGACGTCCGAGATAGACACCAATCCCATGCCCATGTTCCATACCATCCACGGCAGTACAGCGACGAGGGTACTTTCCACGCTCAAACAAGGACAATACCAGCACTAAAACCTCCATTTAGTGGCTACTTTAGCAGTATGCAGGAGCTGCCTACAAACATCCACATGCAACTCAATAGCCAGAATCAAACTAGAAAGCCAGCTGCATCATTTTCCGGTCATGTTGGCGTTACCTCTCATATTGCTCAGGGAATGACCCAGGCATCTTTAGTGAGAGCTGATGACTCTAAAGCGTCTTCAGTCTCAGAAATTTCTCACAGTGGACGGGACAGGATGTCTACAGGTTCTCAAGGAGGAGTAAAAGACCGCTATTTCCCACCTCAGTCACATCACCATGATACAGAGCATAAAGACAACAATGCCCCCTTCAAACAAAGTGACAACCACCATCGCATTTTCTCTGCACCAAGTAATCCCTTGAATGTACCTGATTTAACAAAACCTTCTGAATTGAGGGCGAGCCAAAAGCAACACCATGTGTCTAGCACAGAGGAGCATTCTGGTAGTTATCCCTCAAGTAAGCAGCCCGAGCACAGAAGAAGTGCTGGTCATCTCCATGTTAAAGAGTACTCACAACATCCCTTTCCAACTACAAGCGAGTCAAAGATATGTCCTCAGAAAACCCCTATGCTTTATTCTCTGGCCCAAGAACACAATGATGTGGAGGACTGTCAAAATGAGATCCACAGTGGAAGTGCACCACAGGAACCCCTTGACAGTCAGAGTGGCAAACAGGCACGGAGAAGTGACCGATTTGCCACCACCTTGCGCAATGAGATCCAGATGAGAAGGGCCCAGCTTCAGAAGAGTCGAAGTGCAGCCACTTTAGAAAGTCCGGTTGAAGTTGTAGAAGAGCCTGCAGTCTGGAAGACCACTGGGACTTCATCTCCCTCCTCGGATGGCTGCTTTTCCAGCTCTTATAAAGACCATCTGAAAGAAGCGCAAGCCAGAGTCCTCCAGGCTACATCCTTTAGGAGGAAAGACCTAGAGCCAGTCTTGTTTGAGCATCCAGGTACTGAGGGTCCCACTCGGAAAGACACACCTCCACTTCCAGGTGTCTCCGAGGTCCCACCTACTAAACCCACCTCAGGGAGTAATCAGGTGCTTCGCATTGGTAGCCGCAAGCGGTTTTCTGCAGAAAGGAAGGTTCGGTCTTTTTCTGAGCCAGATAAAATTCATGAAGTAGGAGCTAATGAGAGCTCTGGTCTGCCTGATAATGCTGCATCCTTGGAAAATCGGCACAGATTATTTGAGGTAGCGGGGAAACCAGCTTTCCCTAAGCCTATGCCAAAGCAAAACCTACAGATATCTGAAGACACCAGACATTCCAAAACTGGAGGCATGCACTTTTCTGCAAAGAGTGACACAGCAGGGTGGAGTAACAGTGAAAGCTCAACACCCACTGAACACCACCTTAATGAAGGTCAGGATGGCCCTCATTCGGTGAACCAACAAGCCATGCTAGAACAACAGCGACTTGGCACCTTTGCGGAGTACGAGGCCAAATGGAACATCCAAAGGAAAGCGGCCGAACCAAGGGTATCTGGACGATACCACTCCGCTGATAACATCCTTGATACAGGAAGTGAGAGACGGAGTAAGCCCTCCTGTGTGCATGAAAGATCTAGATCGTCCCCTTCTGCTGACTTCTATGGACAGAAACTTCTAGTTCAAGAAAAGAAGTCAGCTGATTATTCTAAGCCTGAGAAAAATATCTGCGAACAGGAGAAGAATAGTACAAGgttaaatGAGAAAGGGTACAGTGAACTCGTATGCAAGGAGAAACCAGAAGCACCTCCTTTGGCTTTGCCTGAAGACCTGGAGAAAAGGGCTTTAGATCCACCTTCCAGTCATCATAAAACTGCTCACCATTTCTCTGACCATAGCACTCGCAGTGAACCATCAGCCCCCTCCAAAAACAAGAGCTCTGTTCTTTTGCCCCATCTGGAGAAGTACAAATGCCCTGAGGGCACACCTCCTCCTCTTAGCAATTTTCAGGAGGTCCAGTCTGGATCACGAGGGGGAGGAGTCTTGGCCTCACTTTCTCCTGTCAACAATCAAAGCTCTGCCCCTCTCTCAGTCCCCGTTCCCTGGAAGAGTTCAGAGCAGCACAGCAAAGGGCCAACACGGGAGGAGGAGCTACAACAAGAGCTTGTGCCTCCTCCCTTTCCACCTCCTCCCCCTCCAGCTGTCCTGCCCACCCAACAAACCGCTGGCCCGACCCAACCCACCATGGAGGGGCAGCGTTCGCCCTCGCCCCAGTTTGCTCCCCAGAGACTGACTGACAAGCCCCCTGTCTCCGTCTCCATAcaggatgaagctcctggaagGATGGATAGGGTTAAAGATGAGAACACGTCAGTGAAGAAAGTTCCCATTAAGATTGTCCACTCCGAGAGtgacacagaaaaagaaagtcgACAATATCTTGACTTGCCCATCGAGACCCCTGTCAGCTCTCAAGGACATGGAGTAACTCATCTGCAGAGTCTGGGAAACCCGGATCAGTCATACTCTCTGTTCTGTACTTACACCAGGCAAAAAGACCAGGGGCCTGATTTGAGAGAAGCAGATATGGGCCCTCTGAAAGACCAGGGTCCACAAACCAATGTGAACCCAGTATCATATACGTTACATGGCCTGCAGACGTCTCCTTCGTCGGATCAAAGCAGCAACGGAGTGTCTTTACATCCCTCGCAGTCACAAGATGAcgaaaaaagaaaggagctTGTTAGAGACATAATGGACAAGGACAAGTCCCTAGTGGACATTTTAGACCAGAGTAAGATGAAGACCACCATGGATCTGATGGAGGGGATTTTCCCTCAAGGAGAGCAGTTACTGGAAGAGGCCCAACAGCGCAGGAAAGCTGCACCTAAACAGCTTTCTCCTCGCAACTCTGTGGAGaaTCACCTGTGGGTTTTCAGAAAAGAGGAGGACAGCATGGTGGCGGCCACTGCTTTAGTGACTAATTCAACCTACTACAGTACATCTGCACccaaagcagagctgctgattAAGATGAAGGACATGCAGGAACAGAGTGTTGAGCACAACTcagaggaggagctggaggaggacAATGAAAGCGATCTTGCCAGCAAGAAGCATGAGTTGATTGACAGTCTCAGCAAGAAGTTGCAGGTGCTGAGGGAAGCTCAGGAGAGTCTACAGGAGGACGTGCAAGACAACAACGCTCTTGGGGAGGATGTGGAGGCCATCGTGCAGGGTGTCTGCAAGACAAATGAACTCGAAAAGTTCCGTATGTTCGTTGGTGATCTCGATAAAGTGGTCAACCTTCTGCTGTCTTTGTCTGGACGCTTGGCCAGAGTAGAGAACGCCCTGAACAGCCTAGAAGAAGACGCCTCACTGGAGGAGAGGCGGACACTGACAGAGAAACGCAAGCTGCTGATTCGTCAACATGAGGATGCCAAGGAGCTAAAGGAGAACCTCGACAGGAGAGAACGGGTCGTCTACGACATCCTGGCGAGTTACCTGTCAGAAGAGAATATGGCTGACTACGAGCACTTTGTGAAGATGAAGTCTGCCCTTATTATTGAGCAGCGCAAACTCGAGGACAAGATCAAACTGGGGGAGGAGCAGCTCAAGTGTCTGATGGACAGTCTCCCAATGGACCAGAGGACAACCAACTGAggacttcaaaaaaaaaaacgtttatgcAGTGATCCAGAGCAACTCGCTTGACGTCACCCTAAATAACAGGGTTCCAAAGCAGTACTTAATGTGGTCCATTTACTGCCAGTGGAATTACATTCTGGTCATATATTGAGTGCTTCTTGTCTGCAGCATTTTGGCAAGACTCATGAAGACCGTGAAAGTGCTGGGCACTTTTAGATCATGATTTGACCGAATCACCTGTCAGCTGATCTTATATTTTCATGACGTTTCAATGTTACACGACCCATAGAATTATATGgcgaaaataatttttaaagacgcttttaatttttctttctcccACATCTGTTTCAATAGATCGTGCCCTTTTTGCAACAGTGTGCTCTCAAAACCTGACACTCTCTATGTACATGCCACGGTAACTCACTGTGCTGTATCTTTTTAACCACTAGAGGGCAATGAAAGACGCCTGAACGCCAACACAAAAACCTTGTGATTCAAACATACACTCAAATCCCGGTGGCATAAAGCTTTGCACATGTAAGCCGTTTCTATTTACACCAGGAGGTTGTAATTAACTTCcgaaaatgacttttttgatgGTGCATTATTTCAAATGACACGTGTCGCTATCCCGgtcatgttaaaaaataattcaatgatatctttagtaatttattttagcCTTTTGAATCTTTGTATATAACTAGAATAGGCTAGAATTGTATTCTTTCACTTCATTTTAGCCAAGCAAACTACCACTTTAGTCTGCACGCTTTTTCTAGATGAATGTATGATATATATCCATACAATGCATTGTAACAGAATTAGGAATGACTGTAAGTATTCTGAAAGACTTGCCTAAACGATATATTATTTCACTAAGGATTCAGTGCTTGTCTATAAAATACCAGCTGCCTTTTACTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66717 lncRNA upstream 100893 13992745 ~ 13996966 (+) True G45075
TU66694 lncRNA upstream 237250 13860255 ~ 13860609 (+) True G45070
TU66675 lncRNA upstream 261040 13836607 ~ 13836819 (+) True G45056
TU66600 lncRNA upstream 435762 13661812 ~ 13662097 (+) True G44998
XR_006251162.1 lncRNA upstream 440093 13656192 ~ 13657766 (+) True LOC122346715
XR_006251242.1 lncRNA downstream 12825 14129347 ~ 14131078 (+) True LOC122347615
TU66741 lncRNA downstream 13966 14130488 ~ 14130998 (+) False LOC122347615
TU66775 lncRNA downstream 97689 14214211 ~ 14215282 (+) True G45112
TU66744 lncRNA downstream 147079 14263601 ~ 14286676 (+) False G45095
TU66747 lncRNA downstream 167335 14283857 ~ 14286676 (+) True G45095
XM_043242268.1 mRNA upstream 112030 13981225 ~ 13985829 (+) True lrrc40
XM_043242827.1 mRNA upstream 117573 13972180 ~ 13980286 (+) True meltf
XM_043242824.1 mRNA upstream 125956 13938201 ~ 13971903 (+) False dlg1a
XM_043242270.1 mRNA downstream 1269 14117791 ~ 14121182 (+) True cldn34a
XM_043242269.1 mRNA downstream 1270 14117792 ~ 14121182 (+) False cldn34a
XM_043242440.1 mRNA downstream 16819 14133341 ~ 14170086 (+) True wwc3
XM_043242441.1 mRNA downstream 16819 14133341 ~ 14170086 (+) False wwc3
XM_043242906.1 mRNA downstream 76063 14192585 ~ 14197319 (+) True ttc22
unassigned_transcript_1264 other upstream 16855 14080933 ~ 14081004 (+) True trnag-ucc_2
XR_006251224.1 other upstream 118854 13972173 ~ 13979005 (+) False meltf
TU66465 other upstream 687947 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 988493 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 1015740 13080610 ~ 13082119 (+) False smx5
TU67192 other downstream 1119689 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1242339 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 1448459 15564981 ~ 15566668 (+) True G45448
TU67943 other downstream 3070186 17186708 ~ 17187308 (+) True G45894
TU68129 other downstream 3878669 17995191 ~ 17996717 (+) True G46022

Expression Profile