RNA id: XM_043242270.1


Basic Information

Item Value
RNA id XM_043242270.1
length 1184
RNA type mRNA
GC content 0.50
exon number 4
gene id cldn34a
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14117791 ~ 14121182 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAATATAAATACGACGCTATTGCTGTCAAGCGTTTCGTTACCGTGAGAAGGCGCGTTCAATTCAGGGACGTTCTCAATTAATATACCACAAAACACCTTTCAACTCACCATATGGCtaaataatacacaagtttATGCTCGAGAAGTTATTTCCACTCGTTTCGTTTGAGGGTGAGGATCCTGTACGGTGTCAGATGAAGTGATTTACAGGATCCTCCGGAGCTCAAAGCACTTCACAGCTTATCCTGGAACATTCCACAACCCCAGCCATGCTCCTGAAGGACGGCGTGCAGACCTGAGGAGGAAACATACATCACCTGGTGTCAGGACCGTTAGCAATGGCTTCCCTTCCCCAGTCAGTCCACTGTCAGTTTGCGGGTCTAGTGCTTGGGTTTGTAGGATGGATCATGACCTCCTCCGTTTCTGGGGTGAACGACTGGAGGATATGGTACGTGGACAATCGGACGGTCATCACCGGAGGACTGGCCTGGGTGGGAGTGTGGCGGGTCTGTTTCAACAGCCACGTTTTGGATTCAGCTGAGATCTGCAAAAGCATCAGCCTCACAGATCCGTTCACCCCACCAGAAATAGCCGCCGCTCAGGTGCTTTGCATGGCCGCTGTTGGCGTGGGGGTGCTCGCCATCCTGGTGGCGGGACACGCGGTGAGGAACGCCATCTTCGGGGTAGACGGTGTCAGGTTGATCTTTGTGACGGCGGGCTCCTTGTTCTGGCTGACTGCAGCGTGTTCGCTGGTCCCCGTCTTTTGGAATATGAATTCCGTGCTGGCGAATCTCACTATAGACTTCCCTCCGGACTTCTACTTGCCTGCAGCGCCGGTGAAACAGGAAGTGGGTCCGGGGATCGGCATCGGGATCGGTTCGGGTTGCCTGCTCATTGTGAGTGGACTACTCTTAATGTGCTACAGGTATCCCAAAACCCAGATCCCTAAGAGTGAAGAAACAGGACATTTTGACAACAACCCAACAGACGAAGGCTTTCTTGGTGTGATTAAAGAGAGTACGGATGAGGGTATGATCAACCCAGTGTATGAAACAGAAAAGCTTTAACAGCCTATGGAAGGACGCTGAAGGCTCTGAGCACAGTTTCTTAAAATCAGTTTGAggacaaattgtatttttgaggACTCCAAACCAAATAtctaaatacagtatatttaaatgaa

Function

GO: NA

KEGG:

id description
K06087 CLDN; claudin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66717 lncRNA upstream 120825 13992745 ~ 13996966 (+) True G45075
TU66694 lncRNA upstream 257182 13860255 ~ 13860609 (+) True G45070
TU66675 lncRNA upstream 280972 13836607 ~ 13836819 (+) True G45056
TU66600 lncRNA upstream 455694 13661812 ~ 13662097 (+) True G44998
XR_006251162.1 lncRNA upstream 460025 13656192 ~ 13657766 (+) True LOC122346715
XR_006251242.1 lncRNA downstream 8165 14129347 ~ 14131078 (+) True LOC122347615
TU66741 lncRNA downstream 9306 14130488 ~ 14130998 (+) False LOC122347615
TU66775 lncRNA downstream 93029 14214211 ~ 14215282 (+) True G45112
TU66744 lncRNA downstream 142419 14263601 ~ 14286676 (+) False G45095
TU66747 lncRNA downstream 162675 14283857 ~ 14286676 (+) True G45095
XM_043242259.1 mRNA upstream 1269 14079628 ~ 14116522 (+) True shroom2a
XM_043242260.1 mRNA upstream 1269 14079628 ~ 14116522 (+) False shroom2a
XM_043242261.1 mRNA upstream 1269 14079628 ~ 14116522 (+) False shroom2a
XM_043242256.1 mRNA upstream 1269 14079628 ~ 14116522 (+) False shroom2a
XM_043242257.1 mRNA upstream 1269 14079628 ~ 14116522 (+) False shroom2a
XM_043242440.1 mRNA downstream 12159 14133341 ~ 14170086 (+) True wwc3
XM_043242441.1 mRNA downstream 12159 14133341 ~ 14170086 (+) False wwc3
XM_043242906.1 mRNA downstream 71403 14192585 ~ 14197319 (+) True ttc22
XM_043240965.1 mRNA downstream 374285 14495467 ~ 14523316 (+) True jak1
XM_043242955.1 mRNA downstream 587326 14708508 ~ 14712351 (+) True LOC122347575
unassigned_transcript_1264 other upstream 36787 14080933 ~ 14081004 (+) True trnag-ucc_2
XR_006251224.1 other upstream 138786 13972173 ~ 13979005 (+) False meltf
TU66465 other upstream 707879 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 1008425 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 1035672 13080610 ~ 13082119 (+) False smx5
TU67192 other downstream 1115029 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1237679 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 1443799 15564981 ~ 15566668 (+) True G45448
TU67943 other downstream 3065526 17186708 ~ 17187308 (+) True G45894
TU68129 other downstream 3874009 17995191 ~ 17996717 (+) True G46022

Expression Profile